HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 05-DEC-13 4NW4 TITLE CRYSTAL STRUCTURE OF A DUF4822 FAMILY PROTEIN (EF0375) FROM TITLE 2 ENTEROCOCCUS FAECALIS V583 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN S-LAYER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 GENE: EF_0375, I574_00797, OO5_02913; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS TWO LIPOCAIN-LIKE DOMAINS, PF16103 FAMILY (DUF4822), STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4NW4 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4NW4 1 JRNL REVDAT 3 22-NOV-17 4NW4 1 REMARK REVDAT 2 24-DEC-14 4NW4 1 TITLE REVDAT 1 19-FEB-14 4NW4 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (EF0375) FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS V583 AT 1.85 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2019 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2150 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.72000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -2.34000 REMARK 3 B12 (A**2) : 0.72000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2233 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2016 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3017 ; 1.384 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4617 ; 0.716 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;36.464 ;24.790 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 350 ;11.043 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 327 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2594 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1091 ; 2.340 ; 3.789 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1090 ; 2.338 ; 3.788 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1362 ; 2.864 ; 7.068 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2631 39.2187 12.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0296 REMARK 3 T33: 0.0244 T12: -0.0017 REMARK 3 T13: 0.0071 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.6902 L22: 2.5294 REMARK 3 L33: 1.9494 L12: -0.1061 REMARK 3 L13: -0.6884 L23: 0.5098 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0319 S13: -0.0117 REMARK 3 S21: 0.0793 S22: -0.0037 S23: 0.1437 REMARK 3 S31: 0.0151 S32: -0.1298 S33: 0.0173 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 1.3686 31.4308 -11.2157 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0196 REMARK 3 T33: 0.0322 T12: -0.0029 REMARK 3 T13: 0.0143 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.7367 L22: 1.5132 REMARK 3 L33: 1.2599 L12: -0.1985 REMARK 3 L13: -0.0094 L23: 0.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0491 S13: 0.0415 REMARK 3 S21: -0.0706 S22: 0.0255 S23: 0.0197 REMARK 3 S31: -0.0343 S32: -0.0977 S33: -0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2 .A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3.ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4.WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT.5.SULFATES (SO4) FROM THE CRYSTALLIZATION SOLUTION, REMARK 3 CHLORIDE (CL),AND GLYCEROL (GOL) USED AS A CRYOPROTECTANT HAVE REMARK 3 BEEN MODELED INTO THE STRUCTURE. 6.AN UNKNOWN LIGAND (UNL) HAS REMARK 3 BEEN MODELED INTO THE BINDING CAVITY NEAR THE SIDECHAIN OF ARG REMARK 3 A108. THE POSITIONING OF THE UNL IS SIMILAR TO AN UNKNOWN LIGAND REMARK 3 MODELED INTO THE STRUCTURE OF A HOMOLOG,PDB ID 4KH8. REMARK 4 REMARK 4 4NW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 26.731 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.01300 REMARK 200 R SYM FOR SHELL (I) : 1.26400 REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.400M AMMONIUM SULFATE, 0.1M TRIS PH REMARK 280 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.92600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.46300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.19450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.73150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.65750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ASP A 29 REMARK 465 HIS A 30 REMARK 465 ALA A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 ASN A 35 REMARK 465 SER A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 ALA A 39 REMARK 465 ASN A 40 REMARK 465 LEU A 41 REMARK 465 GLY A 42 REMARK 465 LYS A 43 REMARK 465 HIS A 44 REMARK 465 GLN A 45 REMARK 465 ASN A 46 REMARK 465 ASN A 47 REMARK 465 GLY A 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 143 CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 LYS A 194 CD CE NZ REMARK 470 THR A 271 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 67 -71.39 -113.50 REMARK 500 ASN A 81 45.35 -141.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420207 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 29-321) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE DBREF 4NW4 A 29 321 UNP Q838R0 Q838R0_ENTFA 29 321 SEQADV 4NW4 GLY A 0 UNP Q838R0 EXPRESSION TAG SEQRES 1 A 294 GLY ASP HIS ALA ALA ASN PRO ASN SER ALA THR ALA ASN SEQRES 2 A 294 LEU GLY LYS HIS GLN ASN ASN GLY GLN THR ARG GLY ASP SEQRES 3 A 294 LYS ALA THR LYS ILE LEU SER GLY THR ASP TRP GLN GLY SEQRES 4 A 294 THR ARG VAL TYR ASP ALA ALA GLY ASN ASP LEU THR ALA SEQRES 5 A 294 GLU ASN ALA ASN PHE ILE GLY LEU ALA LYS TYR ASP GLY SEQRES 6 A 294 GLU THR GLY PHE TYR GLU PHE PHE ASP LYS ASN THR GLY SEQRES 7 A 294 GLU THR ARG GLY ASP GLU GLY THR PHE PHE VAL THR GLY SEQRES 8 A 294 ASP GLY THR LYS ARG ILE LEU ILE SER ARG THR GLN ASN SEQRES 9 A 294 TYR GLN ALA VAL VAL ASP LEU THR GLU VAL SER LYS ASP SEQRES 10 A 294 LYS PHE THR TYR LYS ARG LEU GLY LYS ASP LYS LEU GLY SEQRES 11 A 294 ASN ASP VAL GLU VAL TYR VAL GLU HIS ILE PRO TYR HIS SEQRES 12 A 294 GLY LYS LYS LEU ALA PHE THR ASN GLY ARG GLU ALA LEU SEQRES 13 A 294 THR ASN GLN THR GLY LYS ILE VAL THR ASN LYS SER GLY SEQRES 14 A 294 ASP LYS ILE LEU GLY THR THR LEU TRP ASN GLY THR LYS SEQRES 15 A 294 VAL VAL ASP LYS ASN GLY ASN ASP VAL THR ALA ALA ASN SEQRES 16 A 294 GLN ASN PHE ILE SER LEU ALA LYS PHE ASP PRO ASN THR SEQRES 17 A 294 SER LYS TYR GLU PHE PHE ASN LEU GLN THR GLY GLU THR SEQRES 18 A 294 ARG GLY ASP PHE GLY TYR PHE GLN VAL VAL ASP ASN ASN SEQRES 19 A 294 LYS ILE ARG ALA HIS VAL SER ILE GLY THR ASN ARG TYR SEQRES 20 A 294 GLY ALA ALA LEU GLU LEU THR GLU LEU ASN ASN ASP ARG SEQRES 21 A 294 PHE THR TYR THR ARG MSE GLY LYS ASP ASN ALA GLY ASN SEQRES 22 A 294 ASP ILE GLN VAL PHE VAL GLU HIS GLU PRO TYR GLN GLY SEQRES 23 A 294 THR TYR HIS PRO ALA PHE THR PHE MODRES 4NW4 MSE A 293 MET SELENOMETHIONINE HET MSE A 293 8 HET UNL A 401 4 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET CL A 411 1 HET CL A 412 1 HET CL A 413 2 HET CL A 414 2 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE C5 H11 N O2 SE FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 GOL 4(C3 H8 O3) FORMUL 12 CL 4(CL 1-) FORMUL 16 HOH *270(H2 O) HELIX 1 1 THR A 50 GLY A 61 1 12 HELIX 2 2 THR A 78 ILE A 85 5 8 HELIX 3 3 SER A 195 THR A 202 1 8 HELIX 4 4 VAL A 218 ILE A 226 5 9 SHEET 1 A 9 TRP A 64 TYR A 70 0 SHEET 2 A 9 LEU A 87 ASP A 91 -1 O ALA A 88 N TRP A 64 SHEET 3 A 9 PHE A 96 PHE A 100 -1 O PHE A 100 N LEU A 87 SHEET 4 A 9 THR A 107 VAL A 116 -1 O ARG A 108 N PHE A 99 SHEET 5 A 9 LYS A 122 SER A 127 -1 O ILE A 126 N THR A 113 SHEET 6 A 9 GLN A 133 SER A 142 -1 O ALA A 134 N LEU A 125 SHEET 7 A 9 LYS A 145 LYS A 153 -1 O THR A 147 N GLU A 140 SHEET 8 A 9 ASP A 159 PRO A 168 -1 O VAL A 162 N ARG A 150 SHEET 9 A 9 TRP A 64 TYR A 70 -1 N TYR A 70 O TYR A 163 SHEET 1 B 9 TRP A 205 ASP A 212 0 SHEET 2 B 9 LEU A 228 ASP A 232 -1 O ALA A 229 N TRP A 205 SHEET 3 B 9 LYS A 237 PHE A 241 -1 O LYS A 237 N ASP A 232 SHEET 4 B 9 THR A 248 VAL A 258 -1 O ARG A 249 N PHE A 240 SHEET 5 B 9 ILE A 263 SER A 268 -1 O ALA A 265 N GLN A 256 SHEET 6 B 9 TYR A 274 ASN A 284 -1 O TYR A 274 N SER A 268 SHEET 7 B 9 ARG A 287 LYS A 295 -1 O THR A 289 N THR A 281 SHEET 8 B 9 ASP A 301 PRO A 310 -1 O ILE A 302 N GLY A 294 SHEET 9 B 9 TRP A 205 ASP A 212 -1 N LYS A 209 O GLU A 307 LINK C ARG A 292 N MSE A 293 1555 1555 1.33 LINK C MSE A 293 N GLY A 294 1555 1555 1.33 SITE 1 AC1 9 PHE A 84 TYR A 90 PHE A 99 ARG A 123 SITE 2 AC1 9 TYR A 148 HIS A 166 HOH A 509 HOH A 533 SITE 3 AC1 9 HOH A 537 SITE 1 AC2 7 PHE A 225 PHE A 240 ARG A 264 TYR A 290 SITE 2 AC2 7 HIS A 308 HOH A 554 HOH A 709 SITE 1 AC3 6 LYS A 213 ILE A 302 GLN A 303 HOH A 538 SITE 2 AC3 6 HOH A 701 HOH A 740 SITE 1 AC4 3 ASN A 242 ARG A 249 HOH A 676 SITE 1 AC5 7 LYS A 145 GLN A 186 HOH A 513 HOH A 517 SITE 2 AC5 7 HOH A 564 HOH A 646 HOH A 755 SITE 1 AC6 7 ASP A 53 SER A 195 GLY A 196 ASP A 197 SITE 2 AC6 7 VAL A 257 HOH A 525 HOH A 527 SITE 1 AC7 7 ARG A 128 ARG A 180 GLU A 181 ALA A 277 SITE 2 AC7 7 CL A 412 HOH A 725 HOH A 762 SITE 1 AC8 4 GLY A 120 LEU A 138 ARG A 287 HOH A 710 SITE 1 AC9 5 LYS A 149 ARG A 287 GLU A 307 HOH A 620 SITE 2 AC9 5 HOH A 626 SITE 1 BC1 1 SER A 195 SITE 1 BC2 4 THR A 113 ARG A 180 GOL A 408 HOH A 632 SITE 1 BC3 4 ARG A 68 ASN A 216 ASP A 217 HOH A 715 SITE 1 BC4 2 ASN A 284 ASN A 285 CRYST1 61.379 61.379 160.389 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016292 0.009406 0.000000 0.00000 SCALE2 0.000000 0.018813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006235 0.00000