HEADER HYDROLASE 06-DEC-13 4NWG TITLE CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE SHP-2 WITH E139D TITLE 2 MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-543; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D, PTP-1D, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE 2C, PTP-2C, SH-PTP2, SHP-2, SHP2, SH-PTP3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.QIU,A.LIN,A.HUTCHINSON,V.ROMANOV,M.RUZANOV,C.THOMPSON,K.LAM, AUTHOR 2 G.KISSELMAN,K.BATTALIE,N.Y.CHIRGADZE REVDAT 2 28-FEB-24 4NWG 1 REMARK SEQADV REVDAT 1 10-DEC-14 4NWG 0 JRNL AUTH W.QIU,A.LIN,A.HUTCHINSON,V.ROMANOV,M.RUZANOV,C.THOMPSON, JRNL AUTH 2 K.LAM,G.KISSELMAN,K.BATTALIE,N.Y.CHIRGADZE JRNL TITL CRYSTAL STRUCTURE OF THE TYROSINE PHOSPHATASE SHP-2 WITH JRNL TITL 2 E139D MUTATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.282 REMARK 3 R VALUE (WORKING SET) : 0.280 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1070 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2965 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2471 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2880 REMARK 3 BIN R VALUE (WORKING SET) : 0.2467 REMARK 3 BIN FREE R VALUE : 0.2581 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.87 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 85 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8021 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.11430 REMARK 3 B22 (A**2) : 7.77100 REMARK 3 B33 (A**2) : -9.88530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.422 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.718 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8245 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11098 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2956 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 230 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1174 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8245 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1032 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8988 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.01 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.510 REMARK 200 R MERGE (I) : 0.11370 REMARK 200 R SYM (I) : 0.06820 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.28 REMARK 200 R MERGE FOR SHELL (I) : 0.57120 REMARK 200 R SYM FOR SHELL (I) : 0.44370 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.5% PEG4000, 0.1M TRIS BUFFER, 0.02M REMARK 280 DDT, PH 8.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.16000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.08000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 106.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.08000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.16000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 106.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 35 REMARK 465 SER A 36 REMARK 465 LYS A 120 REMARK 465 GLU A 121 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ASN A 161 REMARK 465 ASP A 162 REMARK 465 GLY A 163 REMARK 465 LYS A 164 REMARK 465 LYS A 235 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 GLN A 245 REMARK 465 GLU A 299 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 SER A 535 REMARK 465 LYS A 536 REMARK 465 ARG A 537 REMARK 465 LYS A 538 REMARK 465 GLY A 539 REMARK 465 MET B 1 REMARK 465 GLY B 67 REMARK 465 LYS B 89 REMARK 465 GLU B 90 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 GLY B 93 REMARK 465 ASP B 94 REMARK 465 LYS B 120 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASN B 161 REMARK 465 ASP B 162 REMARK 465 GLY B 163 REMARK 465 LYS B 164 REMARK 465 LYS B 235 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 GLN B 245 REMARK 465 GLU B 299 REMARK 465 PHE B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 465 LYS B 324 REMARK 465 LYS B 534 REMARK 465 SER B 535 REMARK 465 LYS B 536 REMARK 465 ARG B 537 REMARK 465 LYS B 538 REMARK 465 GLY B 539 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -63.64 -144.54 REMARK 500 ARG A 4 30.51 70.94 REMARK 500 ARG A 265 34.29 -140.92 REMARK 500 TYR A 375 -6.82 75.40 REMARK 500 CYS A 459 -118.00 -135.47 REMARK 500 SER A 460 -68.80 -97.92 REMARK 500 ILE A 463 -40.61 -133.50 REMARK 500 VAL A 505 102.90 78.37 REMARK 500 SER B 3 139.88 -172.61 REMARK 500 HIS B 84 75.21 50.46 REMARK 500 ARG B 265 34.22 -140.87 REMARK 500 TYR B 375 -6.42 75.48 REMARK 500 ASN B 410 36.76 -72.89 REMARK 500 CYS B 459 -117.86 -135.30 REMARK 500 SER B 460 -68.76 -97.75 REMARK 500 ILE B 463 -39.83 -130.82 REMARK 500 VAL B 505 102.96 78.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NWF RELATED DB: PDB REMARK 900 RELATED ID: 4NXD RELATED DB: PDB DBREF 4NWG A 1 539 UNP Q06124 PTN11_HUMAN 1 543 DBREF 4NWG B 1 539 UNP Q06124 PTN11_HUMAN 1 543 SEQADV 4NWG ASP A 139 UNP Q06124 GLU 139 ENGINEERED MUTATION SEQADV 4NWG A UNP Q06124 GLN 408 DELETION SEQADV 4NWG A UNP Q06124 ALA 409 DELETION SEQADV 4NWG A UNP Q06124 LEU 410 DELETION SEQADV 4NWG A UNP Q06124 LEU 411 DELETION SEQADV 4NWG ASP B 139 UNP Q06124 GLU 139 ENGINEERED MUTATION SEQADV 4NWG B UNP Q06124 GLN 408 DELETION SEQADV 4NWG B UNP Q06124 ALA 409 DELETION SEQADV 4NWG B UNP Q06124 LEU 410 DELETION SEQADV 4NWG B UNP Q06124 LEU 411 DELETION SEQRES 1 A 539 MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 A 539 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 A 539 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 A 539 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 A 539 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 A 539 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 A 539 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 A 539 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 9 A 539 ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS LEU SEQRES 10 A 539 SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS GLY SEQRES 11 A 539 LYS HIS GLY SER PHE LEU VAL ARG ASP SER GLN SER HIS SEQRES 12 A 539 PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP ASP SEQRES 13 A 539 LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR HIS SEQRES 14 A 539 VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL GLY SEQRES 15 A 539 GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL GLU SEQRES 16 A 539 HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY THR SEQRES 17 A 539 VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG ILE SEQRES 18 A 539 ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SER SEQRES 19 A 539 LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY PHE SEQRES 20 A 539 TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS LYS SEQRES 21 A 539 LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU ASN SEQRES 22 A 539 LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP SEQRES 23 A 539 HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN GLU SEQRES 24 A 539 PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET PRO SEQRES 25 A 539 GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS LYS SEQRES 26 A 539 SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR VAL SEQRES 27 A 539 ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER ARG SEQRES 28 A 539 VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY LYS SEQRES 29 A 539 SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA LEU SEQRES 30 A 539 LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS GLU SEQRES 31 A 539 SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS LEU SEQRES 32 A 539 SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL TRP SEQRES 33 A 539 GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL PRO SEQRES 34 A 539 SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU VAL SEQRES 35 A 539 HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO VAL SEQRES 36 A 539 VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY THR SEQRES 37 A 539 PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG GLU SEQRES 38 A 539 LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR ILE SEQRES 39 A 539 GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN THR SEQRES 40 A 539 GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN HIS SEQRES 41 A 539 TYR ILE GLU THR LEU GLN ARG ARG ILE GLU GLU GLU GLN SEQRES 42 A 539 LYS SER LYS ARG LYS GLY SEQRES 1 B 539 MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 B 539 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 B 539 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 B 539 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 B 539 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 B 539 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 B 539 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 B 539 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 9 B 539 ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS LEU SEQRES 10 B 539 SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS GLY SEQRES 11 B 539 LYS HIS GLY SER PHE LEU VAL ARG ASP SER GLN SER HIS SEQRES 12 B 539 PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP ASP SEQRES 13 B 539 LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR HIS SEQRES 14 B 539 VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL GLY SEQRES 15 B 539 GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL GLU SEQRES 16 B 539 HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY THR SEQRES 17 B 539 VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG ILE SEQRES 18 B 539 ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SER SEQRES 19 B 539 LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY PHE SEQRES 20 B 539 TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS LYS SEQRES 21 B 539 LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU ASN SEQRES 22 B 539 LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP SEQRES 23 B 539 HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN GLU SEQRES 24 B 539 PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET PRO SEQRES 25 B 539 GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS LYS SEQRES 26 B 539 SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR VAL SEQRES 27 B 539 ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER ARG SEQRES 28 B 539 VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY LYS SEQRES 29 B 539 SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA LEU SEQRES 30 B 539 LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS GLU SEQRES 31 B 539 SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS LEU SEQRES 32 B 539 SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL TRP SEQRES 33 B 539 GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL PRO SEQRES 34 B 539 SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU VAL SEQRES 35 B 539 HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO VAL SEQRES 36 B 539 VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY THR SEQRES 37 B 539 PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG GLU SEQRES 38 B 539 LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR ILE SEQRES 39 B 539 GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN THR SEQRES 40 B 539 GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN HIS SEQRES 41 B 539 TYR ILE GLU THR LEU GLN ARG ARG ILE GLU GLU GLU GLN SEQRES 42 B 539 LYS SER LYS ARG LYS GLY HET EDO A 601 4 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET PEG A 608 7 HET SO4 B 601 5 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 11(C2 H6 O2) FORMUL 10 PEG C4 H10 O3 FORMUL 11 SO4 O4 S 2- FORMUL 16 HOH *362(H2 O) HELIX 1 1 THR A 12 ARG A 23 1 12 HELIX 2 2 THR A 73 HIS A 84 1 12 HELIX 3 3 GLU A 123 LYS A 129 1 7 HELIX 4 4 SER A 189 ASN A 200 1 12 HELIX 5 5 GLU A 225 SER A 234 1 10 HELIX 6 6 PHE A 247 GLN A 256 1 10 HELIX 7 7 GLN A 257 LEU A 262 5 6 HELIX 8 8 ASN A 273 ASN A 277 5 5 HELIX 9 9 THR A 337 GLU A 348 1 12 HELIX 10 10 PRO A 432 ILE A 449 1 18 HELIX 11 11 GLY A 464 GLY A 483 1 20 HELIX 12 12 ASP A 489 SER A 499 1 11 HELIX 13 13 THR A 507 LYS A 534 1 28 HELIX 14 14 THR B 12 ARG B 23 1 12 HELIX 15 15 THR B 73 HIS B 84 1 12 HELIX 16 16 SER B 118 GLY B 119 5 2 HELIX 17 17 GLU B 121 GLU B 121 5 1 HELIX 18 18 ALA B 122 LYS B 129 1 8 HELIX 19 19 SER B 189 ASN B 200 1 12 HELIX 20 20 GLU B 225 SER B 234 1 10 HELIX 21 21 PHE B 247 GLN B 256 1 10 HELIX 22 22 GLN B 257 LEU B 262 5 6 HELIX 23 23 ARG B 270 ASN B 277 5 8 HELIX 24 24 THR B 337 GLU B 348 1 12 HELIX 25 25 PRO B 432 ILE B 449 1 18 HELIX 26 26 GLY B 464 GLY B 483 1 20 HELIX 27 27 ASP B 489 SER B 499 1 11 HELIX 28 28 THR B 507 GLN B 533 1 27 SHEET 1 A 6 LYS A 70 PHE A 71 0 SHEET 2 A 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 A 6 ALA A 50 GLN A 57 -1 N GLN A 57 O ASP A 64 SHEET 4 A 6 PHE A 41 ARG A 47 -1 N LEU A 43 O ILE A 54 SHEET 5 A 6 SER A 28 PRO A 33 -1 N ARG A 32 O THR A 42 SHEET 6 A 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 B 5 PHE A 113 GLY A 115 0 SHEET 2 B 5 SER A 134 ASP A 139 1 O VAL A 137 N HIS A 114 SHEET 3 B 5 PHE A 147 THR A 153 -1 O VAL A 148 N ARG A 138 SHEET 4 B 5 LYS A 166 GLN A 175 -1 O ILE A 172 N PHE A 147 SHEET 5 B 5 LYS A 178 ASP A 180 -1 O ASP A 180 N ARG A 173 SHEET 1 C 3 PHE A 113 GLY A 115 0 SHEET 2 C 3 SER A 134 ASP A 139 1 O VAL A 137 N HIS A 114 SHEET 3 C 3 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 D 2 MET A 202 VAL A 203 0 SHEET 2 D 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 E 2 ILE A 221 ASN A 222 0 SHEET 2 E 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 F 8 ALA A 307 ILE A 310 0 SHEET 2 F 8 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 3 F 8 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 4 F 8 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 5 F 8 ARG A 413 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 6 F 8 TYR A 396 LYS A 405 -1 N LEU A 401 O VAL A 415 SHEET 7 F 8 MET A 383 ALA A 392 -1 N SER A 391 O LEU A 398 SHEET 8 F 8 LEU A 377 TYR A 380 -1 N LYS A 378 O VAL A 385 SHEET 1 G 2 VAL A 360 GLU A 361 0 SHEET 2 G 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 H 6 LYS B 70 PHE B 71 0 SHEET 2 H 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 H 6 ALA B 50 GLN B 57 -1 N GLN B 57 O ASP B 64 SHEET 4 H 6 PHE B 41 ARG B 47 -1 N ARG B 47 O ALA B 50 SHEET 5 H 6 SER B 28 PRO B 33 -1 N ARG B 32 O THR B 42 SHEET 6 H 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 I 5 PHE B 113 GLY B 115 0 SHEET 2 I 5 SER B 134 ASP B 139 1 O ASP B 139 N GLY B 115 SHEET 3 I 5 PHE B 147 THR B 153 -1 O VAL B 148 N ARG B 138 SHEET 4 I 5 LYS B 166 GLN B 175 -1 O ILE B 172 N PHE B 147 SHEET 5 I 5 LYS B 178 ASP B 180 -1 O ASP B 180 N ARG B 173 SHEET 1 J 3 PHE B 113 GLY B 115 0 SHEET 2 J 3 SER B 134 ASP B 139 1 O ASP B 139 N GLY B 115 SHEET 3 J 3 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 K 2 MET B 202 VAL B 203 0 SHEET 2 K 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 L 2 ILE B 221 ASN B 222 0 SHEET 2 L 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 M 8 ALA B 307 ILE B 310 0 SHEET 2 M 8 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 3 M 8 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 4 M 8 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 5 M 8 ARG B 413 PHE B 420 1 O TYR B 418 N ILE B 353 SHEET 6 M 8 TYR B 396 LYS B 405 -1 N LEU B 401 O VAL B 415 SHEET 7 M 8 MET B 383 ALA B 392 -1 N SER B 391 O LEU B 398 SHEET 8 M 8 LEU B 377 TYR B 380 -1 N LYS B 378 O VAL B 385 SHEET 1 N 2 VAL B 360 GLU B 361 0 SHEET 2 N 2 LYS B 364 SER B 365 -1 O LYS B 364 N GLU B 361 SITE 1 AC1 5 PRO A 312 LYS A 325 TYR A 327 ILE A 474 SITE 2 AC1 5 ASP A 477 SITE 1 AC2 4 THR A 330 GLN A 331 THR A 337 PHE A 341 SITE 1 AC3 2 ILE A 478 LYS A 482 SITE 1 AC4 8 THR A 73 ALA A 75 GLU A 76 GLU A 258 SITE 2 AC4 8 LEU A 261 LEU A 262 SER A 502 GLY A 503 SITE 1 AC5 5 LEU A 436 ASP A 437 TYR A 521 THR A 524 SITE 2 AC5 5 HOH A 809 SITE 1 AC6 2 GLN A 257 GLN A 495 SITE 1 AC7 5 GLU A 69 LYS A 70 TYR A 279 LYS A 280 SITE 2 AC7 5 ASN A 281 SITE 1 AC8 6 LYS A 324 SER A 326 GLN A 446 GLU A 447 SITE 2 AC8 6 ILE A 449 ALA A 452 SITE 1 AC9 5 LYS B 389 SER B 391 LEU B 398 GLU B 400 SITE 2 AC9 5 TRP B 416 SITE 1 BC1 5 PRO B 312 LYS B 325 TYR B 327 ILE B 474 SITE 2 BC1 5 ASP B 477 SITE 1 BC2 5 THR B 330 GLN B 331 THR B 337 PHE B 341 SITE 2 BC2 5 HOH B 798 SITE 1 BC3 2 GLU B 400 LYS B 402 SITE 1 BC4 6 GLU B 69 LYS B 70 TYR B 279 LYS B 280 SITE 2 BC4 6 ASN B 281 HOH B 853 CRYST1 56.320 212.420 92.160 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010851 0.00000