HEADER HYDROLASE 06-DEC-13 4NWI TITLE CRYSTAL STRUCTURE OF CYTOSOLIC 5'-NUCLEOTIDASE IIIB (CN-IIIB) BOUND TO TITLE 2 CYTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 7-METHYLGUANOSINE PHOSPHATE-SPECIFIC 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 5'-NUCLEOTIDASE CG3362; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG3362; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24D KEYWDS ROSSMANNOID FOLD, 5'-NUCLEOTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.MONECKE,P.NEUMANN,R.FICNER REVDAT 2 08-NOV-23 4NWI 1 REMARK LINK REVDAT 1 19-MAR-14 4NWI 0 JRNL AUTH T.MONECKE,J.BUSCHMANN,P.NEUMANN,E.WAHLE,R.FICNER JRNL TITL CRYSTAL STRUCTURES OF THE NOVEL CYTOSOLIC 5'-NUCLEOTIDASE JRNL TITL 2 IIIB EXPLAIN ITS PREFERENCE FOR M7GMP JRNL REF PLOS ONE V. 9 90915 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24603684 JRNL DOI 10.1371/JOURNAL.PONE.0090915 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 40119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.1593 - 4.9362 0.91 2746 145 0.2211 0.2301 REMARK 3 2 4.9362 - 3.9199 0.90 2691 141 0.1835 0.1821 REMARK 3 3 3.9199 - 3.4249 0.91 2701 142 0.2016 0.2193 REMARK 3 4 3.4249 - 3.1120 0.92 2712 143 0.2171 0.2716 REMARK 3 5 3.1120 - 2.8891 0.92 2738 144 0.2346 0.2551 REMARK 3 6 2.8891 - 2.7188 0.92 2725 144 0.2411 0.2486 REMARK 3 7 2.7188 - 2.5827 0.92 2707 142 0.2405 0.2692 REMARK 3 8 2.5827 - 2.4703 0.92 2753 145 0.2467 0.2945 REMARK 3 9 2.4703 - 2.3752 0.92 2712 143 0.2516 0.2876 REMARK 3 10 2.3752 - 2.2933 0.92 2723 144 0.2553 0.2762 REMARK 3 11 2.2933 - 2.2216 0.92 2708 142 0.2585 0.2617 REMARK 3 12 2.2216 - 2.1581 0.92 2743 144 0.2584 0.2879 REMARK 3 13 2.1581 - 2.1013 0.92 2709 143 0.2693 0.2878 REMARK 3 14 2.1013 - 2.0500 0.92 2743 145 0.2837 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.1000 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4941 REMARK 3 ANGLE : 0.818 6697 REMARK 3 CHIRALITY : 0.058 742 REMARK 3 PLANARITY : 0.003 875 REMARK 3 DIHEDRAL : 14.060 1827 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0742 8.8541 12.7363 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1667 REMARK 3 T33: 0.2989 T12: -0.0058 REMARK 3 T13: -0.0065 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 3.3705 L22: 3.0448 REMARK 3 L33: 4.7744 L12: -0.0881 REMARK 3 L13: 0.0980 L23: -1.6782 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: 0.2198 S13: 0.1132 REMARK 3 S21: 0.2518 S22: 0.0677 S23: -0.2251 REMARK 3 S31: -0.2879 S32: 0.0420 S33: 0.0030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1100 -2.1863 16.1728 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1816 REMARK 3 T33: 0.1468 T12: 0.0018 REMARK 3 T13: -0.0051 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.6919 L22: 1.5186 REMARK 3 L33: 0.7937 L12: 0.3634 REMARK 3 L13: -0.3601 L23: 0.5529 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0886 S13: 0.0760 REMARK 3 S21: 0.1540 S22: -0.0503 S23: 0.2211 REMARK 3 S31: -0.0266 S32: 0.0390 S33: 0.0614 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 55 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8309 -11.7010 -9.9899 REMARK 3 T TENSOR REMARK 3 T11: 0.2496 T22: 0.2509 REMARK 3 T33: 0.1974 T12: -0.0623 REMARK 3 T13: 0.0559 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.9754 L22: 0.6469 REMARK 3 L33: 1.1603 L12: 0.0845 REMARK 3 L13: 0.7753 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.1627 S12: 0.1838 S13: -0.1958 REMARK 3 S21: -0.4453 S22: 0.0918 S23: -0.4046 REMARK 3 S31: -0.3486 S32: 0.4470 S33: -0.0379 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 86 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0043 -12.5188 -22.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.6160 T22: 0.3840 REMARK 3 T33: 0.2497 T12: 0.0320 REMARK 3 T13: 0.0260 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.9523 L22: 3.3348 REMARK 3 L33: 1.8818 L12: -1.6323 REMARK 3 L13: -0.8558 L23: 0.7719 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: 0.1812 S13: -0.1179 REMARK 3 S21: -0.8140 S22: 0.0909 S23: -0.3147 REMARK 3 S31: -0.2704 S32: 0.3959 S33: -0.0648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 104 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0066 -15.4226 -15.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.2251 REMARK 3 T33: 0.1543 T12: -0.0039 REMARK 3 T13: 0.0003 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.0638 L22: 1.6266 REMARK 3 L33: 1.5321 L12: 0.1731 REMARK 3 L13: 0.0348 L23: 0.6014 REMARK 3 S TENSOR REMARK 3 S11: 0.0660 S12: 0.2187 S13: -0.0120 REMARK 3 S21: -0.4829 S22: -0.0606 S23: 0.0422 REMARK 3 S31: -0.2356 S32: -0.0908 S33: 0.0475 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 146 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5559 -15.3562 1.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1583 REMARK 3 T33: 0.1488 T12: 0.0006 REMARK 3 T13: 0.0097 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.4420 L22: 1.6590 REMARK 3 L33: 1.3398 L12: 0.1155 REMARK 3 L13: 0.0123 L23: 0.8041 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: 0.0327 S13: -0.0591 REMARK 3 S21: -0.0849 S22: -0.0462 S23: 0.0815 REMARK 3 S31: 0.0164 S32: 0.0038 S33: 0.0837 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 261 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8290 1.1697 6.4356 REMARK 3 T TENSOR REMARK 3 T11: 0.1369 T22: 0.1159 REMARK 3 T33: 0.1617 T12: -0.0169 REMARK 3 T13: -0.0129 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.8829 L22: 2.0762 REMARK 3 L33: 1.6372 L12: 0.1078 REMARK 3 L13: 0.2020 L23: 0.3744 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.1095 S13: 0.2179 REMARK 3 S21: -0.0948 S22: 0.0516 S23: -0.0222 REMARK 3 S31: -0.2518 S32: -0.0075 S33: -0.0362 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.1580 -13.7899 -48.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1282 REMARK 3 T33: 0.1785 T12: 0.0087 REMARK 3 T13: 0.0029 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 3.8693 L22: 3.0874 REMARK 3 L33: 4.2446 L12: 0.3830 REMARK 3 L13: -1.0325 L23: -0.6116 REMARK 3 S TENSOR REMARK 3 S11: -0.3908 S12: -0.1015 S13: -0.0828 REMARK 3 S21: 0.0723 S22: 0.1945 S23: -0.2402 REMARK 3 S31: 0.1686 S32: 0.1867 S33: 0.0812 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 32 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5621 -0.9178 -45.5956 REMARK 3 T TENSOR REMARK 3 T11: 0.0800 T22: 0.1309 REMARK 3 T33: 0.1728 T12: 0.0111 REMARK 3 T13: -0.0051 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.9341 L22: 1.7589 REMARK 3 L33: 1.1237 L12: 0.3028 REMARK 3 L13: -0.7359 L23: 0.5988 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: 0.0019 S13: 0.0265 REMARK 3 S21: 0.1665 S22: 0.0843 S23: -0.1105 REMARK 3 S31: 0.0504 S32: -0.0245 S33: -0.1391 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 65 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1118 13.2403 -20.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.4070 T22: 0.3312 REMARK 3 T33: 0.3757 T12: 0.1356 REMARK 3 T13: -0.2238 T23: -0.1201 REMARK 3 L TENSOR REMARK 3 L11: 1.1229 L22: 0.5593 REMARK 3 L33: 0.9522 L12: 0.3899 REMARK 3 L13: -0.1602 L23: -0.6833 REMARK 3 S TENSOR REMARK 3 S11: -0.0966 S12: -0.0413 S13: 0.0211 REMARK 3 S21: 0.3742 S22: 0.1578 S23: -0.3382 REMARK 3 S31: -0.1232 S32: 0.2650 S33: 0.3812 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 90 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.4777 3.8053 -15.4158 REMARK 3 T TENSOR REMARK 3 T11: 1.0788 T22: 0.2959 REMARK 3 T33: 0.2875 T12: 0.0099 REMARK 3 T13: -0.0325 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 1.1312 L22: 0.6336 REMARK 3 L33: 2.3842 L12: 0.0101 REMARK 3 L13: -0.3157 L23: 0.9151 REMARK 3 S TENSOR REMARK 3 S11: -0.1647 S12: -0.0255 S13: -0.0031 REMARK 3 S21: 0.1850 S22: 0.1822 S23: -0.1056 REMARK 3 S31: 0.1493 S32: 0.0242 S33: 0.2499 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 112 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.2695 13.1836 -19.2719 REMARK 3 T TENSOR REMARK 3 T11: 0.6432 T22: 0.2037 REMARK 3 T33: 0.2804 T12: -0.0042 REMARK 3 T13: 0.1562 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.9185 L22: 2.9479 REMARK 3 L33: 0.1977 L12: -0.4213 REMARK 3 L13: 0.2591 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: -0.1888 S12: -0.0392 S13: -0.0393 REMARK 3 S21: 0.5808 S22: 0.2349 S23: 0.1195 REMARK 3 S31: 0.1395 S32: -0.1993 S33: 0.1281 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESID 136 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.4556 13.5765 -34.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1833 REMARK 3 T33: 0.2441 T12: 0.0153 REMARK 3 T13: 0.0022 T23: -0.0529 REMARK 3 L TENSOR REMARK 3 L11: 0.2563 L22: 1.5179 REMARK 3 L33: 1.5380 L12: -0.5149 REMARK 3 L13: -0.4028 L23: 0.9306 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: -0.1321 S13: 0.1380 REMARK 3 S21: 0.1329 S22: 0.1753 S23: -0.1780 REMARK 3 S31: -0.1348 S32: 0.2542 S33: -0.0762 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESID 221 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.7630 0.2676 -39.8084 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1714 REMARK 3 T33: 0.1802 T12: 0.0048 REMARK 3 T13: 0.0334 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.4646 L22: 1.9236 REMARK 3 L33: 2.1023 L12: -0.1655 REMARK 3 L13: 0.9238 L23: -0.4595 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.1583 S13: -0.0049 REMARK 3 S21: 0.2624 S22: 0.0792 S23: 0.2253 REMARK 3 S31: -0.0018 S32: -0.1838 S33: -0.0481 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN B AND (RESID 283 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7596 -2.1103 -50.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.1602 REMARK 3 T33: 0.1926 T12: 0.0007 REMARK 3 T13: 0.0051 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.7947 L22: 2.3036 REMARK 3 L33: 2.0961 L12: 0.0198 REMARK 3 L13: -0.3335 L23: -0.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.0277 S12: 0.0779 S13: 0.2121 REMARK 3 S21: -0.0982 S22: 0.0881 S23: -0.2818 REMARK 3 S31: 0.1607 S32: 0.1973 S33: -0.0377 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40144 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 35.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4NV0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 4000, 0.2M NACL, 0.1M HEPES , REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.67500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PHE A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 GLU A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 311 REMARK 465 GLU A 312 REMARK 465 ALA A 313 REMARK 465 PRO A 314 REMARK 465 LYS A 315 REMARK 465 GLN A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 LEU A 319 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 PHE B 3 REMARK 465 ASP B 4 REMARK 465 GLU B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 PRO B 9 REMARK 465 THR B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 HIS B 107 REMARK 465 MET B 108 REMARK 465 PRO B 109 REMARK 465 ILE B 110 REMARK 465 ALA B 313 REMARK 465 PRO B 314 REMARK 465 LYS B 315 REMARK 465 GLN B 316 REMARK 465 SER B 317 REMARK 465 SER B 318 REMARK 465 LEU B 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -69.55 -98.77 REMARK 500 SER A 196 -167.44 -160.20 REMARK 500 ASP A 207 55.34 -143.43 REMARK 500 ASN A 220 -168.74 -175.39 REMARK 500 PHE A 269 -52.49 -127.44 REMARK 500 GLN A 291 36.52 -96.75 REMARK 500 PHE B 56 -68.18 -100.25 REMARK 500 GLN B 135 47.83 -77.13 REMARK 500 SER B 196 -166.53 -163.75 REMARK 500 ASN B 218 23.65 -143.43 REMARK 500 ASN B 220 -169.69 -162.15 REMARK 500 VAL B 223 -47.35 -132.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD2 REMARK 620 2 ASP A 57 O 92.4 REMARK 620 3 ASP A 245 OD1 92.5 95.7 REMARK 620 4 HOH A 628 O 87.7 92.4 171.9 REMARK 620 5 HOH A 629 O 178.8 88.7 87.8 91.9 REMARK 620 6 HOH A 630 O 95.1 172.4 82.9 89.1 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 55 OD2 REMARK 620 2 ASP B 57 O 97.3 REMARK 620 3 ASP B 245 OD1 90.7 92.2 REMARK 620 4 HOH B 636 O 90.1 97.2 170.4 REMARK 620 5 HOH B 637 O 167.0 93.9 95.4 82.0 REMARK 620 6 HOH B 638 O 85.2 174.4 92.7 77.7 83.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NV0 RELATED DB: PDB REMARK 900 4NV0 IS THE SAME PROTEIN COMPLEXED WITH 7-METHYLGUANOSINE DBREF 4NWI A 1 319 UNP Q9W197 5NT3B_DROME 1 319 DBREF 4NWI B 1 319 UNP Q9W197 5NT3B_DROME 1 319 SEQRES 1 A 319 MET GLY PHE ASP GLU LYS ARG GLU PRO THR GLY GLY ARG SEQRES 2 A 319 LEU ARG LEU GLN ASP ILE PRO ALA LEU THR GLN ASP HIS SEQRES 3 A 319 CYS ARG MET ARG ASP PRO ALA GLU VAL GLU ARG ILE ILE SEQRES 4 A 319 ASN GLU PHE VAL ILE GLY GLY PRO GLU ARG MET GLN ILE SEQRES 5 A 319 VAL SER ASP PHE ASP TYR THR ILE THR LYS GLN ARG THR SEQRES 6 A 319 GLU ASP GLY GLY ALA VAL PRO SER SER PHE GLY ILE PHE SEQRES 7 A 319 ASN ALA CYS GLN SER LEU PRO GLU ASN PHE LYS ALA GLU SEQRES 8 A 319 THR ASP LYS LEU TYR HIS LYS TYR ARG PRO ILE GLU ILE SEQRES 9 A 319 ASP PRO HIS MET PRO ILE ALA GLU LYS VAL GLN TYR MET SEQRES 10 A 319 ILE GLU TRP TRP THR LYS SER GLY GLU LEU THR SER GLY SEQRES 11 A 319 PHE PRO PHE ASP GLN SER GLU ILE ASP GLN ILE ALA SER SEQRES 12 A 319 LYS TYR THR HIS ALA LEU ARG ASP ARG THR HIS GLU PHE SEQRES 13 A 319 PHE ALA ASP LEU GLN ARG LEU GLY ILE PRO THR LEU VAL SEQRES 14 A 319 PHE SER ALA GLY LEU GLY ASN SER VAL VAL SER VAL LEU SEQRES 15 A 319 ARG GLN ALA ASN VAL LEU HIS PRO ASN VAL LYS VAL VAL SEQRES 16 A 319 SER ASN PHE LEU GLN PHE ARG ASP GLY LEU LEU ASP GLY SEQRES 17 A 319 PHE GLN GLN PRO MET ILE HIS THR PHE ASN LYS ASN GLU SEQRES 18 A 319 THR VAL LEU ASN GLU THR SER GLU TYR TYR ASP LEU VAL SEQRES 19 A 319 HIS THR ARG ASP HIS ILE ILE VAL MET GLY ASP SER ILE SEQRES 20 A 319 GLY ASP ALA ASP MET ALA SER GLY VAL PRO ALA SER SER SEQRES 21 A 319 HIS ILE MET LYS ILE GLY PHE LEU PHE ASP HIS VAL GLU SEQRES 22 A 319 ALA ASN MET LYS LYS TYR MET ASP THR PHE ASP ILE VAL SEQRES 23 A 319 LEU VAL ASP ASP GLN THR MET ASP VAL PRO ARG THR LEU SEQRES 24 A 319 LEU SER LEU ILE GLU LYS GLN HIS LYS LEU ASN LEU GLU SEQRES 25 A 319 ALA PRO LYS GLN SER SER LEU SEQRES 1 B 319 MET GLY PHE ASP GLU LYS ARG GLU PRO THR GLY GLY ARG SEQRES 2 B 319 LEU ARG LEU GLN ASP ILE PRO ALA LEU THR GLN ASP HIS SEQRES 3 B 319 CYS ARG MET ARG ASP PRO ALA GLU VAL GLU ARG ILE ILE SEQRES 4 B 319 ASN GLU PHE VAL ILE GLY GLY PRO GLU ARG MET GLN ILE SEQRES 5 B 319 VAL SER ASP PHE ASP TYR THR ILE THR LYS GLN ARG THR SEQRES 6 B 319 GLU ASP GLY GLY ALA VAL PRO SER SER PHE GLY ILE PHE SEQRES 7 B 319 ASN ALA CYS GLN SER LEU PRO GLU ASN PHE LYS ALA GLU SEQRES 8 B 319 THR ASP LYS LEU TYR HIS LYS TYR ARG PRO ILE GLU ILE SEQRES 9 B 319 ASP PRO HIS MET PRO ILE ALA GLU LYS VAL GLN TYR MET SEQRES 10 B 319 ILE GLU TRP TRP THR LYS SER GLY GLU LEU THR SER GLY SEQRES 11 B 319 PHE PRO PHE ASP GLN SER GLU ILE ASP GLN ILE ALA SER SEQRES 12 B 319 LYS TYR THR HIS ALA LEU ARG ASP ARG THR HIS GLU PHE SEQRES 13 B 319 PHE ALA ASP LEU GLN ARG LEU GLY ILE PRO THR LEU VAL SEQRES 14 B 319 PHE SER ALA GLY LEU GLY ASN SER VAL VAL SER VAL LEU SEQRES 15 B 319 ARG GLN ALA ASN VAL LEU HIS PRO ASN VAL LYS VAL VAL SEQRES 16 B 319 SER ASN PHE LEU GLN PHE ARG ASP GLY LEU LEU ASP GLY SEQRES 17 B 319 PHE GLN GLN PRO MET ILE HIS THR PHE ASN LYS ASN GLU SEQRES 18 B 319 THR VAL LEU ASN GLU THR SER GLU TYR TYR ASP LEU VAL SEQRES 19 B 319 HIS THR ARG ASP HIS ILE ILE VAL MET GLY ASP SER ILE SEQRES 20 B 319 GLY ASP ALA ASP MET ALA SER GLY VAL PRO ALA SER SER SEQRES 21 B 319 HIS ILE MET LYS ILE GLY PHE LEU PHE ASP HIS VAL GLU SEQRES 22 B 319 ALA ASN MET LYS LYS TYR MET ASP THR PHE ASP ILE VAL SEQRES 23 B 319 LEU VAL ASP ASP GLN THR MET ASP VAL PRO ARG THR LEU SEQRES 24 B 319 LEU SER LEU ILE GLU LYS GLN HIS LYS LEU ASN LEU GLU SEQRES 25 B 319 ALA PRO LYS GLN SER SER LEU HET MG A 401 1 HET CTN A 402 17 HET CL A 403 1 HET MG B 401 1 HET CTN B 402 17 HET CL B 403 1 HETNAM MG MAGNESIUM ION HETNAM CTN 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE HETNAM CL CHLORIDE ION HETSYN CTN CYTIDINE FORMUL 3 MG 2(MG 2+) FORMUL 4 CTN 2(C9 H13 N3 O5) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *321(H2 O) HELIX 1 1 ARG A 15 THR A 23 5 9 HELIX 2 2 ASP A 31 GLY A 46 1 16 HELIX 3 3 SER A 73 ASN A 79 1 7 HELIX 4 4 ASN A 87 ILE A 104 1 18 HELIX 5 5 PRO A 109 THR A 128 1 20 HELIX 6 6 ASP A 134 SER A 143 1 10 HELIX 7 7 LYS A 144 LEU A 149 5 6 HELIX 8 8 ARG A 152 GLY A 164 1 13 HELIX 9 9 GLY A 175 ALA A 185 1 11 HELIX 10 10 TYR A 230 HIS A 235 1 6 HELIX 11 11 ILE A 247 MET A 252 5 6 HELIX 12 12 HIS A 271 PHE A 283 1 13 HELIX 13 13 MET A 293 ASN A 310 1 18 HELIX 14 14 ARG B 15 THR B 23 5 9 HELIX 15 15 ASP B 31 GLY B 46 1 16 HELIX 16 16 SER B 73 ALA B 80 1 8 HELIX 17 17 ASN B 87 ILE B 104 1 18 HELIX 18 18 GLU B 112 THR B 128 1 17 HELIX 19 19 SER B 136 SER B 143 1 8 HELIX 20 20 LYS B 144 THR B 146 5 3 HELIX 21 21 ARG B 152 GLY B 164 1 13 HELIX 22 22 GLY B 175 ALA B 185 1 11 HELIX 23 23 TYR B 230 HIS B 235 1 6 HELIX 24 24 SER B 246 ALA B 250 5 5 HELIX 25 25 HIS B 271 PHE B 283 1 13 HELIX 26 26 MET B 293 GLU B 312 1 20 SHEET 1 A 7 CYS A 27 ARG A 28 0 SHEET 2 A 7 ILE A 285 VAL A 288 -1 O VAL A 286 N ARG A 28 SHEET 3 A 7 HIS A 261 LEU A 268 1 N GLY A 266 O LEU A 287 SHEET 4 A 7 HIS A 239 GLY A 244 1 N VAL A 242 O ILE A 265 SHEET 5 A 7 MET A 50 SER A 54 1 N VAL A 53 O ILE A 241 SHEET 6 A 7 THR A 167 LEU A 174 1 O LEU A 168 N SER A 54 SHEET 7 A 7 VAL A 192 ASN A 197 1 O LYS A 193 N VAL A 169 SHEET 1 B 2 LEU A 199 ARG A 202 0 SHEET 2 B 2 LEU A 205 PHE A 209 -1 O LEU A 205 N ARG A 202 SHEET 1 C 7 CYS B 27 ARG B 28 0 SHEET 2 C 7 ILE B 285 VAL B 288 -1 O VAL B 286 N ARG B 28 SHEET 3 C 7 HIS B 261 LEU B 268 1 N GLY B 266 O LEU B 287 SHEET 4 C 7 HIS B 239 GLY B 244 1 N VAL B 242 O ILE B 265 SHEET 5 C 7 MET B 50 SER B 54 1 N VAL B 53 O ILE B 241 SHEET 6 C 7 THR B 167 LEU B 174 1 O LEU B 168 N ILE B 52 SHEET 7 C 7 VAL B 192 ASN B 197 1 O LYS B 193 N VAL B 169 SHEET 1 D 2 LEU B 199 ARG B 202 0 SHEET 2 D 2 LEU B 205 PHE B 209 -1 O ASP B 207 N GLN B 200 LINK OD2 ASP A 55 MG MG A 401 1555 1555 1.93 LINK O ASP A 57 MG MG A 401 1555 1555 2.23 LINK OD1 ASP A 245 MG MG A 401 1555 1555 2.08 LINK MG MG A 401 O HOH A 628 1555 1555 2.02 LINK MG MG A 401 O HOH A 629 1555 1555 2.02 LINK MG MG A 401 O HOH A 630 1555 1555 2.02 LINK OD2 ASP B 55 MG MG B 401 1555 1555 2.05 LINK O ASP B 57 MG MG B 401 1555 1555 2.01 LINK OD1 ASP B 245 MG MG B 401 1555 1555 2.00 LINK MG MG B 401 O HOH B 636 1555 1555 2.35 LINK MG MG B 401 O HOH B 637 1555 1555 1.99 LINK MG MG B 401 O HOH B 638 1555 1555 1.99 CISPEP 1 GLN A 211 PRO A 212 0 1.92 CISPEP 2 GLN B 211 PRO B 212 0 4.88 SITE 1 AC1 6 ASP A 55 ASP A 57 ASP A 245 HOH A 628 SITE 2 AC1 6 HOH A 629 HOH A 630 SITE 1 AC2 11 ASP A 57 PHE A 75 ARG A 100 GLU A 103 SITE 2 AC2 11 TRP A 120 TRP A 121 SER A 124 ALA A 172 SITE 3 AC2 11 GLY A 173 THR A 216 HOH A 557 SITE 1 AC3 3 ASP A 55 ALA A 172 LYS A 219 SITE 1 AC4 6 ASP B 55 ASP B 57 ASP B 245 HOH B 636 SITE 2 AC4 6 HOH B 637 HOH B 638 SITE 1 AC5 11 ASP B 57 PHE B 75 TYR B 96 GLU B 103 SITE 2 AC5 11 TRP B 120 TRP B 121 SER B 124 GLY B 173 SITE 3 AC5 11 THR B 216 HOH B 553 HOH B 561 SITE 1 AC6 5 ASP B 55 ALA B 172 LYS B 219 HOH B 501 SITE 2 AC6 5 HOH B 636 CRYST1 46.600 99.350 72.810 90.00 92.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021459 0.000000 0.000923 0.00000 SCALE2 0.000000 0.010065 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013747 0.00000