HEADER FLUORESCENT PROTEIN 06-DEC-13 4NWS TITLE CRYSTAL STRUCTURE OF PSLSSMKATE, A PHOTOSWITCHABLE LSSMKATE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: ARTIFICIAL GENE; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: LMG194; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD/HIS-B KEYWDS FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,K.PIATKEVICH,S.C.ALMO,V.VERKHUSHA REVDAT 3 06-DEC-23 4NWS 1 REMARK REVDAT 2 20-SEP-23 4NWS 1 LINK REVDAT 1 17-SEP-14 4NWS 0 JRNL AUTH V.N.MALASHKEVICH,K.PIATKEVICH,S.C.ALMO,V.VERKHUSHA JRNL TITL CRYSTAL STRUCTURE OF PSLSSMKATE, A PHOTOSWITCHABLE LSSMKATE JRNL TITL 2 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 12906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 373 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 37.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.78000 REMARK 3 B22 (A**2) : 6.78000 REMARK 3 B33 (A**2) : -13.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.237 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3656 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4930 ; 1.433 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 6.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;36.082 ;24.424 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;17.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2760 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 1.617 ; 7.347 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2220 ; 2.866 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1874 ; 2.332 ; 7.849 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6722 28.0202 -22.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0102 REMARK 3 T33: 0.0845 T12: 0.0003 REMARK 3 T13: 0.0253 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.8645 L22: 1.1554 REMARK 3 L33: 2.3474 L12: -0.1054 REMARK 3 L13: 0.4941 L23: -0.3381 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: 0.0657 S13: -0.1186 REMARK 3 S21: -0.0359 S22: 0.0688 S23: -0.0661 REMARK 3 S31: 0.1344 S32: 0.0262 S33: -0.0895 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 228 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8610 41.8743 -31.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.2365 REMARK 3 T33: 0.0422 T12: 0.0906 REMARK 3 T13: 0.0088 T23: 0.0654 REMARK 3 L TENSOR REMARK 3 L11: 1.2426 L22: 0.9160 REMARK 3 L33: 1.7855 L12: -0.0814 REMARK 3 L13: 0.8409 L23: -0.3786 REMARK 3 S TENSOR REMARK 3 S11: -0.1683 S12: -0.3175 S13: -0.0738 REMARK 3 S21: 0.0372 S22: 0.2019 S23: 0.0809 REMARK 3 S31: -0.2849 S32: -0.5387 S33: -0.0336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4NWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12943 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, PH 3.5, 25% PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.51600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.51600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.30700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.51600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.51600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.30700 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 49.51600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 49.51600 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.30700 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 49.51600 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 49.51600 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.30700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 LYS A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 LYS B 231 REMARK 465 LEU B 232 REMARK 465 ASN B 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 62 C PHE A 62 O 0.131 REMARK 500 PHE B 62 C PHE B 62 O 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 66 N - CA - CB ANGL. DEV. = -17.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 -7.13 81.45 REMARK 500 PHE A 69 48.77 -96.17 REMARK 500 THR A 73 -75.67 -101.99 REMARK 500 LEU A 138 44.55 -142.22 REMARK 500 PRO A 183 130.95 -39.67 REMARK 500 ASP A 206 72.33 46.09 REMARK 500 ASN B 21 -6.59 87.03 REMARK 500 PHE B 69 46.85 -100.79 REMARK 500 LEU B 138 39.04 -142.00 REMARK 500 ASP B 151 70.49 42.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 183 ALA B 184 -144.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 4NWS A -11 233 PDB 4NWS 4NWS -11 233 DBREF 4NWS B -11 233 PDB 4NWS 4NWS -11 233 SEQRES 1 A 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 A 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 A 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 A 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 A 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 A 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 A 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 A 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 A 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 A 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 A 243 ILE ARG GLY VAL ASN PHE THR SER ASN GLY PRO VAL MET SEQRES 12 A 243 GLN LYS LYS THR LEU GLY TRP GLU ALA SER THR GLU MET SEQRES 13 A 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG SER ASP SEQRES 14 A 243 GLU ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 A 243 ASN LEU LYS SER THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 A 243 ASN LEU LYS VAL PRO GLY VAL TYR TYR VAL ASP ARG ARG SEQRES 17 A 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 A 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 A 243 PRO SER LYS LEU GLY HIS LYS LEU ASN SEQRES 1 B 243 MET GLY SER HIS HIS HIS HIS HIS HIS GLY ARG SER MET SEQRES 2 B 243 SER GLU LEU ILE LYS GLU ASN MET HIS MET LYS LEU TYR SEQRES 3 B 243 MET GLU GLY THR VAL ASN ASN HIS HIS PHE LYS CYS THR SEQRES 4 B 243 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 B 243 MET ARG ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 B 243 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 B 243 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 B 243 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG VAL THR SEQRES 9 B 243 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 B 243 THR SER LEU GLN ASP GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 B 243 ILE ARG GLY VAL ASN PHE THR SER ASN GLY PRO VAL MET SEQRES 12 B 243 GLN LYS LYS THR LEU GLY TRP GLU ALA SER THR GLU MET SEQRES 13 B 243 LEU TYR PRO ALA ASP GLY GLY LEU GLU GLY ARG SER ASP SEQRES 14 B 243 GLU ALA LEU LYS LEU VAL GLY GLY GLY HIS LEU ILE CYS SEQRES 15 B 243 ASN LEU LYS SER THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 B 243 ASN LEU LYS VAL PRO GLY VAL TYR TYR VAL ASP ARG ARG SEQRES 17 B 243 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 B 243 GLU GLN HIS GLU VAL ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 B 243 PRO SER LYS LEU GLY HIS LYS LEU ASN MODRES 4NWS NRQ A 63 MET MODRES 4NWS NRQ A 63 TYR MODRES 4NWS NRQ A 63 GLY MODRES 4NWS NRQ B 63 MET MODRES 4NWS NRQ B 63 TYR MODRES 4NWS NRQ B 63 GLY HET NRQ A 63 23 HET NRQ B 63 23 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ 2(C16 H17 N3 O4 S) FORMUL 3 HOH *97(H2 O) HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 SER A 66 ILE A 70 5 5 HELIX 3 3 ASP A 78 SER A 83 1 6 HELIX 4 4 ALA B 54 PHE B 62 5 9 HELIX 5 5 SER B 66 ILE B 70 5 5 HELIX 6 6 ASP B 78 SER B 83 1 6 HELIX 7 7 PRO B 183 LEU B 187 5 5 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O VAL A 211 SHEET 4 A11 HIS A 22 LYS A 33 -1 N THR A 27 O LYS A 44 SHEET 5 A11 MET A 9 VAL A 19 -1 N GLY A 17 O PHE A 24 SHEET 6 A11 CYS A 114 VAL A 124 1 O LEU A 115 N LYS A 12 SHEET 7 A11 VAL A 101 GLN A 111 -1 N THR A 105 O LYS A 120 SHEET 8 A11 PHE A 88 TYR A 96 -1 N THR A 94 O LEU A 102 SHEET 9 A11 HIS A 169 SER A 180 -1 O ASN A 173 N THR A 95 SHEET 10 A11 GLY A 153 LEU A 164 -1 N LEU A 154 O TYR A 178 SHEET 11 A11 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N LYS A 203 O GLU A 212 SHEET 4 B 6 SER A 143 ALA A 150 -1 N LEU A 147 O TYR A 193 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O GLU A 155 N TYR A 148 SHEET 6 B 6 THR A 137 TRP A 140 -1 N GLY A 139 O LYS A 163 SHEET 1 C11 ASN B 71 HIS B 72 0 SHEET 2 C11 TYR B 210 ARG B 220 1 O ALA B 217 N ASN B 71 SHEET 3 C11 THR B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 C11 HIS B 22 LYS B 33 -1 N THR B 27 O LYS B 44 SHEET 5 C11 MET B 9 VAL B 19 -1 N VAL B 19 O HIS B 22 SHEET 6 C11 CYS B 114 VAL B 124 1 O GLY B 123 N THR B 18 SHEET 7 C11 VAL B 101 GLN B 111 -1 N THR B 103 O ARG B 122 SHEET 8 C11 PHE B 88 TYR B 96 -1 N ARG B 92 O ALA B 104 SHEET 9 C11 HIS B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 C11 LEU B 154 LEU B 164 -1 N SER B 158 O LEU B 174 SHEET 11 C11 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 D 6 ASN B 71 HIS B 72 0 SHEET 2 D 6 TYR B 210 ARG B 220 1 O ALA B 217 N ASN B 71 SHEET 3 D 6 TYR B 193 ALA B 205 -1 N LYS B 203 O GLU B 212 SHEET 4 D 6 SER B 143 PRO B 149 -1 N LEU B 147 O TYR B 193 SHEET 5 D 6 LEU B 154 LEU B 164 -1 O ARG B 157 N MET B 146 SHEET 6 D 6 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 LINK C PHE A 62 N1 NRQ A 63 1555 1555 1.36 LINK C3 NRQ A 63 N SER A 66 1555 1555 1.36 LINK C PHE B 62 N1 NRQ B 63 1555 1555 1.37 LINK C3 NRQ B 63 N SER B 66 1555 1555 1.34 CISPEP 1 GLY A 49 PRO A 50 0 -7.91 CISPEP 2 PHE A 84 PRO A 85 0 15.93 CISPEP 3 GLY B 49 PRO B 50 0 -11.24 CISPEP 4 PHE B 84 PRO B 85 0 12.25 CRYST1 99.032 99.032 106.614 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009380 0.00000