HEADER IMMUNE SYSTEM 06-DEC-13 4NWT TITLE CRYSTAL STRUCTURE OF THE ANTI-HUMAN NGF FAB APE1531 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APE1531 AB FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: APE1531 AB FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IGHG1; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA SANDWICH, HUMAN BETA NERVE GROWTH FACTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.VERDINO,R.L.STANFIELD,I.A.WILSON REVDAT 6 20-SEP-23 4NWT 1 REMARK REVDAT 5 02-JUN-21 4NWT 1 SOURCE REMARK DBREF REVDAT 4 02-AUG-17 4NWT 1 SOURCE REMARK REVDAT 3 10-DEC-14 4NWT 1 JRNL REVDAT 2 29-OCT-14 4NWT 1 JRNL REVDAT 1 22-OCT-14 4NWT 0 JRNL AUTH P.M.BOWERS,P.VERDINO,Z.WANG,J.DA SILVA CORREIA,M.CHHOA, JRNL AUTH 2 G.MACONDRAY,M.DO,T.Y.NEBEN,R.A.HORLICK,R.L.STANFIELD, JRNL AUTH 3 I.A.WILSON,D.J.KING JRNL TITL NUCLEOTIDE INSERTIONS AND DELETIONS COMPLEMENT POINT JRNL TITL 2 MUTATIONS TO MASSIVELY EXPAND THE DIVERSITY CREATED BY JRNL TITL 3 SOMATIC HYPERMUTATION OF ANTIBODIES. JRNL REF J.BIOL.CHEM. V. 289 33557 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 25320089 JRNL DOI 10.1074/JBC.M114.607176 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 46262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3407 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3460 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 1.46000 REMARK 3 B33 (A**2) : -1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.164 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3715 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3391 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5086 ; 1.988 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7867 ; 0.878 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 6.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;35.242 ;24.575 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;13.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.291 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4266 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 844 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 108 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5283 18.0597 29.4874 REMARK 3 T TENSOR REMARK 3 T11: 0.1304 T22: 0.0505 REMARK 3 T33: 0.0828 T12: -0.0220 REMARK 3 T13: -0.0249 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 4.0795 L22: 1.7248 REMARK 3 L33: 3.8761 L12: 0.1265 REMARK 3 L13: -2.6418 L23: -0.4605 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: 0.3052 S13: -0.0741 REMARK 3 S21: -0.0826 S22: 0.0807 S23: 0.0794 REMARK 3 S31: 0.1682 S32: -0.3407 S33: -0.0203 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0990 18.1198 28.6697 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.0706 REMARK 3 T33: 0.0812 T12: 0.0262 REMARK 3 T13: 0.0019 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.8257 L22: 2.9948 REMARK 3 L33: 3.3927 L12: 0.9346 REMARK 3 L13: 0.3311 L23: 1.6589 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0270 S13: -0.2310 REMARK 3 S21: 0.1018 S22: -0.0850 S23: -0.0054 REMARK 3 S31: 0.3261 S32: 0.0417 S33: 0.0494 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 109 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7958 36.7669 62.5172 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0418 REMARK 3 T33: 0.0612 T12: -0.0035 REMARK 3 T13: -0.0084 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.9015 L22: 2.3025 REMARK 3 L33: 3.1063 L12: 1.1741 REMARK 3 L13: 1.9573 L23: 0.9864 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.1477 S13: 0.1835 REMARK 3 S21: -0.1124 S22: 0.0347 S23: 0.0330 REMARK 3 S31: -0.0757 S32: -0.2715 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 231 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6224 25.9244 60.7261 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0093 REMARK 3 T33: 0.0471 T12: -0.0114 REMARK 3 T13: -0.0170 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 3.4697 L22: 0.7531 REMARK 3 L33: 4.2645 L12: 0.3081 REMARK 3 L13: -1.7783 L23: -0.0526 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: -0.0665 S13: -0.0617 REMARK 3 S21: 0.0167 S22: 0.0339 S23: 0.0651 REMARK 3 S31: 0.1652 S32: 0.0776 S33: 0.0514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4NWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97830 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3QOT FOR VHVL, 3SOB FOR CH1CL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20000, 0.1M NACL, 0.1M MES REMARK 280 PH6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.86000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.86000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 498 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 232 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 532 O HOH L 544 1.70 REMARK 500 O HOH L 562 O HOH L 563 1.86 REMARK 500 O HOH L 531 O HOH L 544 2.01 REMARK 500 O HOH L 564 O HOH L 565 2.03 REMARK 500 NH2 ARG H 100G O1 PGE H 303 2.08 REMARK 500 O HOH H 472 O HOH H 549 2.12 REMARK 500 O HOH L 541 O HOH L 553 2.14 REMARK 500 O HOH L 556 O HOH L 557 2.15 REMARK 500 O HOH H 572 O HOH H 600 2.16 REMARK 500 OE1 GLU L 105 OH TYR L 173 2.17 REMARK 500 O HOH L 439 O HOH L 550 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 142 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP H 101 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 51 -32.95 66.00 REMARK 500 ALA L 84 169.69 179.90 REMARK 500 SER H 30 -134.98 54.70 REMARK 500 ASN H 100I -74.13 -127.17 REMARK 500 ASP H 146 60.21 61.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE H 303 DBREF 4NWT L 1 105 PDB 4NWT 4NWT 1 105 DBREF 4NWT L 106 214 UNP Q8TCD0 Q8TCD0_HUMAN 131 239 DBREF 4NWT H 1 101 PDB 4NWT 4NWT 1 101 DBREF 4NWT H 122 220 UNP P01857 IGHG1_HUMAN 9 95 SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 SER LEU GLY GLU ARG ALA THR ILE ASN CYS LYS SER SER SEQRES 3 L 220 GLN SER VAL LEU TYR SER SER ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN ALA GLU ASP VAL ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR ASP ASN TYR PRO ILE THR PHE SEQRES 9 L 220 GLY GLN GLY THR ARG LEU GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 233 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 233 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 233 GLY THR PHE SER ASN TYR ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 233 ALA PRO GLY GLN GLY PHE GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 233 PRO ILE PHE GLY THR ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 233 GLY ARG VAL THR ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 233 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 233 ALA VAL TYR TYR CYS ALA ARG GLY PRO GLU TYR TYR ASP SEQRES 9 H 233 TYR VAL TRP GLY SER TYR ARG TYR ASN TYR PHE ASP TYR SEQRES 10 H 233 TRP GLY GLN GLY THR LEU VAL THR VAL SER SER GLY SER SEQRES 11 H 233 ALA SER ALA PRO THR LEU PHE PRO LEU ALA PRO SER SER SEQRES 12 H 233 LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU SEQRES 13 H 233 VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP SEQRES 14 H 233 ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO SEQRES 15 H 233 ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 16 H 233 VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR SEQRES 17 H 233 TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS SEQRES 18 H 233 VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS HET MES L 301 12 HET MES L 302 12 HET ACT L 303 4 HET ACT L 304 4 HET ACT H 301 4 HET ACT H 302 4 HET PGE H 303 10 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 9 PGE C6 H14 O4 FORMUL 10 HOH *373(H2 O) HELIX 1 1 GLN L 79 VAL L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 LYS L 188 1 6 HELIX 4 4 ARG H 83 THR H 87 5 5 HELIX 5 5 SER H 163 ALA H 165 5 3 HELIX 6 6 SER H 196 LEU H 198 5 3 HELIX 7 7 LYS H 213 ASN H 216 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ASN L 22 N SER L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 D 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 F 4 GLN H 3 GLN H 6 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 F 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 G 6 GLU H 10 LYS H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 G 6 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 ALA H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 PHE H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 G 6 ALA H 57 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 H 4 GLU H 10 LYS H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 H 4 ALA H 88 GLY H 95 -1 N TYR H 90 O THR H 107 SHEET 4 H 4 TYR H 102 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 I 2 GLU H 97 ASP H 100 0 SHEET 2 I 2 SER H 100E TYR H 100H-1 O SER H 100E N ASP H 100 SHEET 1 J 4 THR H 120 LEU H 124 0 SHEET 2 J 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 J 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 190 SHEET 1 K 4 THR H 133 SER H 134 0 SHEET 2 K 4 THR H 137 TYR H 147 -1 O THR H 137 N SER H 134 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 147 SHEET 4 K 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 186 SHEET 1 L 3 THR H 153 TRP H 157 0 SHEET 2 L 3 ILE H 207 HIS H 212 -1 O ASN H 209 N SER H 156 SHEET 3 L 3 THR H 217 LYS H 222 -1 O VAL H 219 N VAL H 210 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.09 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS L 214 CYS H 230 1555 1555 2.06 SSBOND 4 CYS H 22 CYS H 92 1555 1555 2.14 SSBOND 5 CYS H 142 CYS H 208 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 -6.18 CISPEP 2 SER L 7 PRO L 8 0 -1.42 CISPEP 3 TYR L 94 PRO L 95 0 -5.80 CISPEP 4 TYR L 140 PRO L 141 0 3.75 CISPEP 5 PHE H 148 PRO H 149 0 -11.38 CISPEP 6 GLU H 150 PRO H 151 0 -6.79 SITE 1 AC1 8 GLN H 61 LYS H 62 GLN H 64 ARG H 66 SITE 2 AC1 8 SER H 128 LYS H 129 CYS L 214 MES L 302 SITE 1 AC2 8 GLN H 61 LYS H 129 GLU L 81 THR L 206 SITE 2 AC2 8 LYS L 207 SER L 208 MES L 301 HOH L 438 SITE 1 AC3 5 GLN L 37 LYS L 39 LYS L 45 GLU L 81 SITE 2 AC3 5 ASP L 82 SITE 1 AC4 5 SER H 134 SER L 114 VAL L 115 LYS L 207 SITE 2 AC4 5 HOH L 448 SITE 1 AC5 3 ASN H 216 ASP H 220 HOH H 474 SITE 1 AC6 10 PHE H 174 PRO H 175 VAL H 177 SER H 186 SITE 2 AC6 10 LEU H 187 SER H 188 HOH H 445 HOH H 536 SITE 3 AC6 10 SER L 162 SER L 176 SITE 1 AC7 8 ASN H 58 TYR H 100F ARG H 100G TYR H 100H SITE 2 AC7 8 TYR L 91 ASN L 93 TYR L 94 HOH L 427 CRYST1 127.720 64.360 63.810 90.00 108.67 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007830 0.000000 0.002646 0.00000 SCALE2 0.000000 0.015538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016542 0.00000