HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 10-DEC-13 4NY4 TITLE CRYSTAL STRUCTURE OF CYP3A4 IN COMPLEX WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 3A4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-503; COMPND 5 SYNONYM: 1,8-CINEOLE 2-EXO-MONOOXYGENASE, ALBENDAZOLE MONOOXYGENASE, COMPND 6 ALBENDAZOLE SULFOXIDASE, CYPIIIA3, CYPIIIA4, CYTOCHROME P450 3A3, COMPND 7 CYTOCHROME P450 HLP, CYTOCHROME P450 NF-25, CYTOCHROME P450-PCN1, COMPND 8 NIFEDIPINE OXIDASE, QUININE 3-MONOOXYGENASE, TAUROCHENODEOXYCHOLATE COMPND 9 6-ALPHA-HYDROXYLASE; COMPND 10 EC: 1.14.13.-, 1.14.13.157, 1.14.13.32, 1.14.13.67, 1.14.13.97; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP3A3, CYP3A4, CYP3A4 CYP3A3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE KEYWDS CYTOCHROME P-450, CYP3A4, INHIBITOR, STRUCTURE-BASED DRUG DESIGN, KEYWDS 2 DRUG METABOLISM, MONOOXYGENASE, OXIDOREDUCTASE-OXIDOREDUCTASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.BRANDEN,T.SJOGREN,Y.XUE REVDAT 2 28-FEB-24 4NY4 1 REMARK SEQADV REVDAT 1 13-AUG-14 4NY4 0 JRNL AUTH G.BRANDEN,T.SJOGREN,V.SCHNECKE,Y.XUE JRNL TITL STRUCTURE-BASED LIGAND DESIGN TO OVERCOME CYP INHIBITION IN JRNL TITL 2 DRUG DISCOVERY PROJECTS. JRNL REF DRUG DISCOV TODAY V. 19 905 2014 JRNL REFN ISSN 1359-6446 JRNL PMID 24642031 JRNL DOI 10.1016/J.DRUDIS.2014.03.012 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 11342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2696 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2767 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2561 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3308 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 135 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 122.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 124.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.07970 REMARK 3 B22 (A**2) : 10.86610 REMARK 3 B33 (A**2) : -7.78640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.910 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3878 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5265 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1331 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 84 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 555 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3878 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 488 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4318 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 1.65 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.09 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -19.7098 -24.1240 -14.1338 REMARK 3 T TENSOR REMARK 3 T11: -0.0049 T22: -0.0080 REMARK 3 T33: 0.0019 T12: 0.0139 REMARK 3 T13: 0.1515 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 2.7630 L22: 3.0425 REMARK 3 L33: 1.9243 L12: -1.4985 REMARK 3 L13: -1.9859 L23: 0.7334 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0606 S13: -0.0344 REMARK 3 S21: 0.0374 S22: -0.0417 S23: -0.0499 REMARK 3 S31: -0.0182 S32: 0.0503 S33: 0.0353 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083801. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11344 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CACL2, GLYCEROL, PH 7.2, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.84600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.21100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.84600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.21100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.84600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.21100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.27400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.84600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.21100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 77780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -78.54800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -78.54800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 LYS A 266 REMARK 465 HIS A 267 REMARK 465 ARG A 268 REMARK 465 VAL A 269 REMARK 465 ASP A 270 REMARK 465 ASN A 280 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 46 -52.20 68.05 REMARK 500 VAL A 95 -66.37 -99.80 REMARK 500 LYS A 96 -79.18 -55.83 REMARK 500 PHE A 108 -146.59 -92.48 REMARK 500 PRO A 110 98.69 -68.33 REMARK 500 MET A 114 5.26 -68.49 REMARK 500 ASP A 123 -136.69 63.57 REMARK 500 PHE A 189 115.65 64.27 REMARK 500 VAL A 191 72.73 41.93 REMARK 500 ILE A 193 122.08 -27.21 REMARK 500 LEU A 210 82.55 -68.49 REMARK 500 GLU A 258 -78.26 -106.82 REMARK 500 HIS A 287 78.77 -158.47 REMARK 500 LYS A 288 -102.62 -80.66 REMARK 500 MET A 371 -50.62 65.95 REMARK 500 PRO A 389 -130.82 -75.97 REMARK 500 GLU A 410 72.38 57.66 REMARK 500 ASP A 497 90.65 47.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 601 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 442 SG REMARK 620 2 HEM A 601 NA 95.0 REMARK 620 3 HEM A 601 NB 89.0 89.5 REMARK 620 4 HEM A 601 NC 90.8 174.0 89.5 REMARK 620 5 HEM A 601 ND 98.8 89.4 172.2 90.8 REMARK 620 6 2QH A 602 N32 170.0 80.1 99.6 94.3 72.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2QH A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NZ2 RELATED DB: PDB DBREF 4NY4 A 25 503 UNP P08684 CP3A4_HUMAN 25 503 SEQADV 4NY4 ALA A 24 UNP P08684 EXPRESSION TAG SEQADV 4NY4 HIS A 504 UNP P08684 EXPRESSION TAG SEQADV 4NY4 HIS A 505 UNP P08684 EXPRESSION TAG SEQADV 4NY4 HIS A 506 UNP P08684 EXPRESSION TAG SEQADV 4NY4 HIS A 507 UNP P08684 EXPRESSION TAG SEQRES 1 A 484 ALA TYR GLY THR HIS SER HIS GLY LEU PHE LYS LYS LEU SEQRES 2 A 484 GLY ILE PRO GLY PRO THR PRO LEU PRO PHE LEU GLY ASN SEQRES 3 A 484 ILE LEU SER TYR HIS LYS GLY PHE CYS MET PHE ASP MET SEQRES 4 A 484 GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP GLY PHE TYR SEQRES 5 A 484 ASP GLY GLN GLN PRO VAL LEU ALA ILE THR ASP PRO ASP SEQRES 6 A 484 MET ILE LYS THR VAL LEU VAL LYS GLU CYS TYR SER VAL SEQRES 7 A 484 PHE THR ASN ARG ARG PRO PHE GLY PRO VAL GLY PHE MET SEQRES 8 A 484 LYS SER ALA ILE SER ILE ALA GLU ASP GLU GLU TRP LYS SEQRES 9 A 484 ARG LEU ARG SER LEU LEU SER PRO THR PHE THR SER GLY SEQRES 10 A 484 LYS LEU LYS GLU MET VAL PRO ILE ILE ALA GLN TYR GLY SEQRES 11 A 484 ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU ALA GLU THR SEQRES 12 A 484 GLY LYS PRO VAL THR LEU LYS ASP VAL PHE GLY ALA TYR SEQRES 13 A 484 SER MET ASP VAL ILE THR SER THR SER PHE GLY VAL ASN SEQRES 14 A 484 ILE ASP SER LEU ASN ASN PRO GLN ASP PRO PHE VAL GLU SEQRES 15 A 484 ASN THR LYS LYS LEU LEU ARG PHE ASP PHE LEU ASP PRO SEQRES 16 A 484 PHE PHE LEU SER ILE THR VAL PHE PRO PHE LEU ILE PRO SEQRES 17 A 484 ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE PRO ARG GLU SEQRES 18 A 484 VAL THR ASN PHE LEU ARG LYS SER VAL LYS ARG MET LYS SEQRES 19 A 484 GLU SER ARG LEU GLU ASP THR GLN LYS HIS ARG VAL ASP SEQRES 20 A 484 PHE LEU GLN LEU MET ILE ASP SER GLN ASN SER LYS GLU SEQRES 21 A 484 THR GLU SER HIS LYS ALA LEU SER ASP LEU GLU LEU VAL SEQRES 22 A 484 ALA GLN SER ILE ILE PHE ILE PHE ALA GLY TYR GLU THR SEQRES 23 A 484 THR SER SER VAL LEU SER PHE ILE MET TYR GLU LEU ALA SEQRES 24 A 484 THR HIS PRO ASP VAL GLN GLN LYS LEU GLN GLU GLU ILE SEQRES 25 A 484 ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO THR TYR ASP SEQRES 26 A 484 THR VAL LEU GLN MET GLU TYR LEU ASP MET VAL VAL ASN SEQRES 27 A 484 GLU THR LEU ARG LEU PHE PRO ILE ALA MET ARG LEU GLU SEQRES 28 A 484 ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN GLY MET PHE SEQRES 29 A 484 ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SER TYR ALA SEQRES 30 A 484 LEU HIS ARG ASP PRO LYS TYR TRP THR GLU PRO GLU LYS SEQRES 31 A 484 PHE LEU PRO GLU ARG PHE SER LYS LYS ASN LYS ASP ASN SEQRES 32 A 484 ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SER GLY PRO SEQRES 33 A 484 ARG ASN CYS ILE GLY MET ARG PHE ALA LEU MET ASN MET SEQRES 34 A 484 LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN PHE SER PHE SEQRES 35 A 484 LYS PRO CYS LYS GLU THR GLN ILE PRO LEU LYS LEU SER SEQRES 36 A 484 LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO VAL VAL LEU SEQRES 37 A 484 LYS VAL GLU SER ARG ASP GLY THR VAL SER GLY ALA HIS SEQRES 38 A 484 HIS HIS HIS HET HEM A 601 43 HET 2QH A 602 34 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 2QH (8R)-3,3-DIFLUORO-8-[4-FLUORO-3-(PYRIDIN-3-YL)PHENYL]- HETNAM 2 2QH 8-(4-METHOXY-3-METHYLPHENYL)-2,3,4,8- HETNAM 3 2QH TETRAHYDROIMIDAZO[1,5-A]PYRIMIDIN-6-AMINE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 2QH C25 H22 F3 N5 O HELIX 1 1 GLY A 31 GLY A 37 1 7 HELIX 2 2 ASN A 49 LYS A 55 5 7 HELIX 3 3 GLY A 56 GLY A 69 1 14 HELIX 4 4 ASP A 86 VAL A 95 1 10 HELIX 5 5 VAL A 111 ALA A 117 5 7 HELIX 6 6 ASP A 123 SER A 134 1 12 HELIX 7 7 PRO A 135 PHE A 137 5 3 HELIX 8 8 THR A 138 GLY A 167 1 30 HELIX 9 9 LEU A 172 SER A 188 1 17 HELIX 10 10 ASP A 201 LYS A 209 1 9 HELIX 11 11 ASP A 217 PHE A 226 1 10 HELIX 12 12 PHE A 228 LEU A 236 1 9 HELIX 13 13 PRO A 242 GLU A 258 1 17 HELIX 14 14 LEU A 272 GLN A 279 1 8 HELIX 15 15 SER A 291 HIS A 324 1 34 HELIX 16 16 HIS A 324 LEU A 339 1 16 HELIX 17 17 THR A 346 MET A 353 1 8 HELIX 18 18 MET A 353 PHE A 367 1 15 HELIX 19 19 SER A 398 ARG A 403 1 6 HELIX 20 20 LEU A 415 SER A 420 5 6 HELIX 21 21 ASN A 423 ILE A 427 5 5 HELIX 22 22 GLY A 444 ASN A 462 1 19 SHEET 1 A 4 VAL A 71 ASP A 76 0 SHEET 2 A 4 GLN A 79 ILE A 84 -1 O VAL A 81 N PHE A 74 SHEET 3 A 4 VAL A 393 PRO A 397 1 O MET A 395 N LEU A 82 SHEET 4 A 4 ARG A 372 VAL A 376 -1 N ARG A 375 O VAL A 394 SHEET 1 B 3 VAL A 170 THR A 171 0 SHEET 2 B 3 VAL A 490 SER A 495 -1 O LEU A 491 N VAL A 170 SHEET 3 B 3 PHE A 463 PRO A 467 -1 N SER A 464 O GLU A 494 SHEET 1 C 2 VAL A 381 ILE A 383 0 SHEET 2 C 2 MET A 386 ILE A 388 -1 O ILE A 388 N VAL A 381 LINK SG CYS A 442 FE HEM A 601 1555 1555 2.39 LINK FE HEM A 601 N32 2QH A 602 1555 1555 2.58 CISPEP 1 ILE A 473 PRO A 474 0 -0.40 SITE 1 AC1 22 ARG A 105 ILE A 118 TRP A 126 ARG A 130 SITE 2 AC1 22 PHE A 137 ALA A 305 THR A 309 VAL A 313 SITE 3 AC1 22 ILE A 369 ALA A 370 LEU A 373 ARG A 375 SITE 4 AC1 22 PRO A 434 PHE A 435 GLY A 436 ARG A 440 SITE 5 AC1 22 ASN A 441 CYS A 442 ILE A 443 ALA A 448 SITE 6 AC1 22 MET A 452 2QH A 602 SITE 1 AC2 13 ARG A 105 ARG A 106 PHE A 108 SER A 119 SITE 2 AC2 13 ARG A 212 PHE A 213 PHE A 215 PHE A 241 SITE 3 AC2 13 PHE A 304 ALA A 305 THR A 309 ALA A 370 SITE 4 AC2 13 HEM A 601 CRYST1 78.548 101.692 132.422 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007552 0.00000