data_4NY9 # _entry.id 4NY9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NY9 RCSB RCSB083806 WWPDB D_1000083806 # _pdbx_database_status.entry_id 4NY9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-10 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Khan, J.A.' 1 'Camac, D.M.' 2 # _citation.id primary _citation.title 'Discovery of the CCR1 antagonist, BMS-817399, for the treatment of rheumatoid arthritis.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 57 _citation.page_first 7550 _citation.page_last 7564 _citation.year 2014 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25101488 _citation.pdbx_database_id_DOI 10.1021/jm5003167 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Santella, J.B.' 1 primary 'Gardner, D.S.' 2 primary 'Duncia, J.V.' 3 primary 'Wu, H.' 4 primary 'Dhar, M.' 5 primary 'Cavallaro, C.' 6 primary 'Tebben, A.J.' 7 primary 'Carter, P.H.' 8 primary 'Barrish, J.C.' 9 primary 'Yarde, M.' 10 primary 'Briceno, S.W.' 11 primary 'Cvijic, M.E.' 12 primary 'Grafstrom, R.R.' 13 primary 'Liu, R.' 14 primary 'Patel, S.R.' 15 primary 'Watson, A.J.' 16 primary 'Yang, G.' 17 primary 'Rose, A.V.' 18 primary 'Vickery, R.D.' 19 primary 'Caceres-Cortes, J.' 20 primary 'Caporuscio, C.' 21 primary 'Camac, D.M.' 22 primary 'Khan, J.A.' 23 primary 'An, Y.' 24 primary 'Foster, W.R.' 25 primary 'Davies, P.' 26 primary 'Hynes, J.' 27 # _cell.length_a 91.760 _cell.length_b 91.760 _cell.length_c 85.651 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4NY9 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 4NY9 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nuclear receptor subfamily 1 group I member 2' 33447.750 1 ? ? 'unp residues 142-431' ? 2 non-polymer syn 'N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide' 438.988 1 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Orphan nuclear receptor PAR1, Orphan nuclear receptor PXR, Pregnane X receptor, Steroid and xenobiotic receptor, SXR' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI ; _entity_poly.pdbx_seq_one_letter_code_can ;GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 LEU n 1 3 THR n 1 4 GLU n 1 5 GLU n 1 6 GLN n 1 7 ARG n 1 8 MET n 1 9 MET n 1 10 ILE n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 MET n 1 15 ASP n 1 16 ALA n 1 17 GLN n 1 18 MET n 1 19 LYS n 1 20 THR n 1 21 PHE n 1 22 ASP n 1 23 THR n 1 24 THR n 1 25 PHE n 1 26 SER n 1 27 HIS n 1 28 PHE n 1 29 LYS n 1 30 ASN n 1 31 PHE n 1 32 ARG n 1 33 LEU n 1 34 PRO n 1 35 GLY n 1 36 VAL n 1 37 LEU n 1 38 SER n 1 39 SER n 1 40 GLY n 1 41 CYS n 1 42 GLU n 1 43 LEU n 1 44 PRO n 1 45 GLU n 1 46 SER n 1 47 LEU n 1 48 GLN n 1 49 ALA n 1 50 PRO n 1 51 SER n 1 52 ARG n 1 53 GLU n 1 54 GLU n 1 55 ALA n 1 56 ALA n 1 57 LYS n 1 58 TRP n 1 59 SER n 1 60 GLN n 1 61 VAL n 1 62 ARG n 1 63 LYS n 1 64 ASP n 1 65 LEU n 1 66 CYS n 1 67 SER n 1 68 LEU n 1 69 LYS n 1 70 VAL n 1 71 SER n 1 72 LEU n 1 73 GLN n 1 74 LEU n 1 75 ARG n 1 76 GLY n 1 77 GLU n 1 78 ASP n 1 79 GLY n 1 80 SER n 1 81 VAL n 1 82 TRP n 1 83 ASN n 1 84 TYR n 1 85 LYS n 1 86 PRO n 1 87 PRO n 1 88 ALA n 1 89 ASP n 1 90 SER n 1 91 GLY n 1 92 GLY n 1 93 LYS n 1 94 GLU n 1 95 ILE n 1 96 PHE n 1 97 SER n 1 98 LEU n 1 99 LEU n 1 100 PRO n 1 101 HIS n 1 102 MET n 1 103 ALA n 1 104 ASP n 1 105 MET n 1 106 SER n 1 107 THR n 1 108 TYR n 1 109 MET n 1 110 PHE n 1 111 LYS n 1 112 GLY n 1 113 ILE n 1 114 ILE n 1 115 SER n 1 116 PHE n 1 117 ALA n 1 118 LYS n 1 119 VAL n 1 120 ILE n 1 121 SER n 1 122 TYR n 1 123 PHE n 1 124 ARG n 1 125 ASP n 1 126 LEU n 1 127 PRO n 1 128 ILE n 1 129 GLU n 1 130 ASP n 1 131 GLN n 1 132 ILE n 1 133 SER n 1 134 LEU n 1 135 LEU n 1 136 LYS n 1 137 GLY n 1 138 ALA n 1 139 ALA n 1 140 PHE n 1 141 GLU n 1 142 LEU n 1 143 CYS n 1 144 GLN n 1 145 LEU n 1 146 ARG n 1 147 PHE n 1 148 ASN n 1 149 THR n 1 150 VAL n 1 151 PHE n 1 152 ASN n 1 153 ALA n 1 154 GLU n 1 155 THR n 1 156 GLY n 1 157 THR n 1 158 TRP n 1 159 GLU n 1 160 CYS n 1 161 GLY n 1 162 ARG n 1 163 LEU n 1 164 SER n 1 165 TYR n 1 166 CYS n 1 167 LEU n 1 168 GLU n 1 169 ASP n 1 170 THR n 1 171 ALA n 1 172 GLY n 1 173 GLY n 1 174 PHE n 1 175 GLN n 1 176 GLN n 1 177 LEU n 1 178 LEU n 1 179 LEU n 1 180 GLU n 1 181 PRO n 1 182 MET n 1 183 LEU n 1 184 LYS n 1 185 PHE n 1 186 HIS n 1 187 TYR n 1 188 MET n 1 189 LEU n 1 190 LYS n 1 191 LYS n 1 192 LEU n 1 193 GLN n 1 194 LEU n 1 195 HIS n 1 196 GLU n 1 197 GLU n 1 198 GLU n 1 199 TYR n 1 200 VAL n 1 201 LEU n 1 202 MET n 1 203 GLN n 1 204 ALA n 1 205 ILE n 1 206 SER n 1 207 LEU n 1 208 PHE n 1 209 SER n 1 210 PRO n 1 211 ASP n 1 212 ARG n 1 213 PRO n 1 214 GLY n 1 215 VAL n 1 216 LEU n 1 217 GLN n 1 218 HIS n 1 219 ARG n 1 220 VAL n 1 221 VAL n 1 222 ASP n 1 223 GLN n 1 224 LEU n 1 225 GLN n 1 226 GLU n 1 227 GLN n 1 228 PHE n 1 229 ALA n 1 230 ILE n 1 231 THR n 1 232 LEU n 1 233 LYS n 1 234 SER n 1 235 TYR n 1 236 ILE n 1 237 GLU n 1 238 CYS n 1 239 ASN n 1 240 ARG n 1 241 PRO n 1 242 GLN n 1 243 PRO n 1 244 ALA n 1 245 HIS n 1 246 ARG n 1 247 PHE n 1 248 LEU n 1 249 PHE n 1 250 LEU n 1 251 LYS n 1 252 ILE n 1 253 MET n 1 254 ALA n 1 255 MET n 1 256 LEU n 1 257 THR n 1 258 GLU n 1 259 LEU n 1 260 ARG n 1 261 SER n 1 262 ILE n 1 263 ASN n 1 264 ALA n 1 265 GLN n 1 266 HIS n 1 267 THR n 1 268 GLN n 1 269 ARG n 1 270 LEU n 1 271 LEU n 1 272 ARG n 1 273 ILE n 1 274 GLN n 1 275 ASP n 1 276 ILE n 1 277 HIS n 1 278 PRO n 1 279 PHE n 1 280 ALA n 1 281 THR n 1 282 PRO n 1 283 LEU n 1 284 MET n 1 285 GLN n 1 286 GLU n 1 287 LEU n 1 288 PHE n 1 289 GLY n 1 290 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NR1I2, PXR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCO7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NR1I2_HUMAN _struct_ref.pdbx_db_accession O75469 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI ; _struct_ref.pdbx_align_begin 142 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NY9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 290 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75469 _struct_ref_seq.db_align_beg 142 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 431 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 142 _struct_ref_seq.pdbx_auth_seq_align_end 431 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2Q4 non-polymer . 'N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide' ? 'C23 H35 Cl N2 O4' 438.988 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4NY9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.8 _exptl_crystal_grow.temp 296 _exptl_crystal_grow.pdbx_details ;0.1M imidazole, 8-10%(V/V)isopropanol. Apo crystal was soaked with 5 mM compound and Crystals harvested next day using 32% ethylene glycol as cryoprotectant, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 296K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.pdbx_collection_date 2008-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1 1.0 2 1.0 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 4NY9 _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 50.000 _reflns.number_obs 9474 _reflns.pdbx_Rmerge_I_obs 0.115 _reflns.pdbx_netI_over_sigmaI 17.000 _reflns.pdbx_redundancy 6.600 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4NY9 _refine.ls_d_res_high 2.8000 _refine.ls_d_res_low 45.8800 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8000 _refine.ls_number_reflns_obs 9443 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2316 _refine.ls_R_factor_R_work 0.2283 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2982 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 450 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 60.0612 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0100 _refine.aniso_B[2][2] 0.0100 _refine.aniso_B[3][3] -0.0200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9260 _refine.correlation_coeff_Fo_to_Fc_free 0.8940 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 1.8110 _refine.pdbx_overall_ESU_R_Free 0.4180 _refine.overall_SU_ML 0.3220 _refine.overall_SU_B 15.4810 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 96.150 _refine.B_iso_min 36.810 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2127 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 2178 _refine_hist.d_res_high 2.8000 _refine_hist.d_res_low 45.8800 # _refine_ls_shell.d_res_high 2.8010 _refine_ls_shell.d_res_low 2.8740 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.1300 _refine_ls_shell.number_reflns_R_work 640 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2590 _refine_ls_shell.R_factor_R_free 0.3190 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 682 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4NY9 _struct.title ;Crystal Structure Of the Human PXR-LBD In Complex With N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide ; _struct.pdbx_descriptor 'PXR Ligand Binding Domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NY9 _struct_keywords.text ;pregnane X receptor, PXR, ligand binding domain, steroid receptor coactivator-1; CCR1, Chemokine Receptor-1; NR, nuclear receptor; AF, activation function; MDR1, multi-drug resistance gene-1, TRANSCRIPTION-TRANSCRIPTION inhibitor complex ; _struct_keywords.pdbx_keywords 'TRANSCRIPTION/TRANSCRIPTION inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? PHE A 21 ? THR A 144 PHE A 162 1 ? 19 HELX_P HELX_P2 2 ARG A 62 ? SER A 67 ? ARG A 203 SER A 208 1 ? 6 HELX_P HELX_P3 3 LYS A 93 ? SER A 97 ? LYS A 234 SER A 238 5 ? 5 HELX_P HELX_P4 4 LEU A 98 ? VAL A 119 ? LEU A 239 VAL A 260 1 ? 22 HELX_P HELX_P5 5 ILE A 120 ? ASP A 125 ? ILE A 261 ASP A 266 1 ? 6 HELX_P HELX_P6 6 PRO A 127 ? VAL A 150 ? PRO A 268 VAL A 291 1 ? 24 HELX_P HELX_P7 7 GLU A 180 ? LEU A 192 ? GLU A 321 LEU A 333 1 ? 13 HELX_P HELX_P8 8 HIS A 195 ? PHE A 208 ? HIS A 336 PHE A 349 1 ? 14 HELX_P HELX_P9 9 GLN A 217 ? ARG A 240 ? GLN A 358 ARG A 381 1 ? 24 HELX_P HELX_P10 10 PHE A 247 ? HIS A 277 ? PHE A 388 HIS A 418 1 ? 31 HELX_P HELX_P11 11 THR A 281 ? GLY A 289 ? THR A 422 GLY A 430 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 81 ? TYR A 84 ? VAL A 222 TYR A 225 A 2 VAL A 70 ? ARG A 75 ? VAL A 211 ARG A 216 A 3 LEU A 163 ? LEU A 167 ? LEU A 304 LEU A 308 A 4 THR A 157 ? CYS A 160 ? THR A 298 CYS A 301 A 5 PHE A 151 ? ASN A 152 ? PHE A 292 ASN A 293 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 84 ? O TYR A 225 N LEU A 72 ? N LEU A 213 A 2 3 N SER A 71 ? N SER A 212 O CYS A 166 ? O CYS A 307 A 3 4 O TYR A 165 ? O TYR A 306 N TRP A 158 ? N TRP A 299 A 4 5 O THR A 157 ? O THR A 298 N ASN A 152 ? N ASN A 293 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE 2Q4 A 501' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE GOL A 502' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 VAL A 70 ? VAL A 211 . ? 1_555 ? 2 AC1 9 MET A 102 ? MET A 243 . ? 1_555 ? 3 AC1 9 ALA A 103 ? ALA A 244 . ? 1_555 ? 4 AC1 9 GLN A 144 ? GLN A 285 . ? 1_555 ? 5 AC1 9 PHE A 147 ? PHE A 288 . ? 1_555 ? 6 AC1 9 TRP A 158 ? TRP A 299 . ? 1_555 ? 7 AC1 9 TYR A 165 ? TYR A 306 . ? 1_555 ? 8 AC1 9 HIS A 266 ? HIS A 407 . ? 1_555 ? 9 AC1 9 HOH D . ? HOH A 605 . ? 1_555 ? 10 AC2 7 THR A 20 ? THR A 161 . ? 1_555 ? 11 AC2 7 PHE A 21 ? PHE A 162 . ? 1_555 ? 12 AC2 7 ASP A 22 ? ASP A 163 . ? 1_555 ? 13 AC2 7 TYR A 108 ? TYR A 249 . ? 1_555 ? 14 AC2 7 MET A 109 ? MET A 250 . ? 1_555 ? 15 AC2 7 GLY A 112 ? GLY A 253 . ? 1_555 ? 16 AC2 7 ARG A 146 ? ARG A 287 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NY9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4NY9 _atom_sites.fract_transf_matrix[1][1] 0.010898 _atom_sites.fract_transf_matrix[1][2] -0.000000 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010898 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011675 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 142 142 GLY GLY A . n A 1 2 LEU 2 143 143 LEU LEU A . n A 1 3 THR 3 144 144 THR THR A . n A 1 4 GLU 4 145 145 GLU GLU A . n A 1 5 GLU 5 146 146 GLU GLU A . n A 1 6 GLN 6 147 147 GLN GLN A . n A 1 7 ARG 7 148 148 ARG ARG A . n A 1 8 MET 8 149 149 MET MET A . n A 1 9 MET 9 150 150 MET MET A . n A 1 10 ILE 10 151 151 ILE ILE A . n A 1 11 ARG 11 152 152 ARG ARG A . n A 1 12 GLU 12 153 153 GLU GLU A . n A 1 13 LEU 13 154 154 LEU LEU A . n A 1 14 MET 14 155 155 MET MET A . n A 1 15 ASP 15 156 156 ASP ASP A . n A 1 16 ALA 16 157 157 ALA ALA A . n A 1 17 GLN 17 158 158 GLN GLN A . n A 1 18 MET 18 159 159 MET MET A . n A 1 19 LYS 19 160 160 LYS LYS A . n A 1 20 THR 20 161 161 THR THR A . n A 1 21 PHE 21 162 162 PHE PHE A . n A 1 22 ASP 22 163 163 ASP ASP A . n A 1 23 THR 23 164 164 THR THR A . n A 1 24 THR 24 165 165 THR THR A . n A 1 25 PHE 25 166 166 PHE PHE A . n A 1 26 SER 26 167 167 SER SER A . n A 1 27 HIS 27 168 168 HIS HIS A . n A 1 28 PHE 28 169 169 PHE PHE A . n A 1 29 LYS 29 170 170 LYS LYS A . n A 1 30 ASN 30 171 171 ASN ASN A . n A 1 31 PHE 31 172 172 PHE PHE A . n A 1 32 ARG 32 173 173 ARG ARG A . n A 1 33 LEU 33 174 174 LEU LEU A . n A 1 34 PRO 34 175 175 PRO PRO A . n A 1 35 GLY 35 176 176 GLY GLY A . n A 1 36 VAL 36 177 ? ? ? A . n A 1 37 LEU 37 178 ? ? ? A . n A 1 38 SER 38 179 ? ? ? A . n A 1 39 SER 39 180 ? ? ? A . n A 1 40 GLY 40 181 ? ? ? A . n A 1 41 CYS 41 182 ? ? ? A . n A 1 42 GLU 42 183 ? ? ? A . n A 1 43 LEU 43 184 ? ? ? A . n A 1 44 PRO 44 185 ? ? ? A . n A 1 45 GLU 45 186 ? ? ? A . n A 1 46 SER 46 187 ? ? ? A . n A 1 47 LEU 47 188 ? ? ? A . n A 1 48 GLN 48 189 ? ? ? A . n A 1 49 ALA 49 190 ? ? ? A . n A 1 50 PRO 50 191 ? ? ? A . n A 1 51 SER 51 192 ? ? ? A . n A 1 52 ARG 52 193 ? ? ? A . n A 1 53 GLU 53 194 ? ? ? A . n A 1 54 GLU 54 195 ? ? ? A . n A 1 55 ALA 55 196 ? ? ? A . n A 1 56 ALA 56 197 ? ? ? A . n A 1 57 LYS 57 198 ? ? ? A . n A 1 58 TRP 58 199 ? ? ? A . n A 1 59 SER 59 200 ? ? ? A . n A 1 60 GLN 60 201 201 GLN GLN A . n A 1 61 VAL 61 202 202 VAL VAL A . n A 1 62 ARG 62 203 203 ARG ARG A . n A 1 63 LYS 63 204 204 LYS LYS A . n A 1 64 ASP 64 205 205 ASP ASP A . n A 1 65 LEU 65 206 206 LEU LEU A . n A 1 66 CYS 66 207 207 CYS CYS A . n A 1 67 SER 67 208 208 SER SER A . n A 1 68 LEU 68 209 209 LEU LEU A . n A 1 69 LYS 69 210 210 LYS LYS A . n A 1 70 VAL 70 211 211 VAL VAL A . n A 1 71 SER 71 212 212 SER SER A . n A 1 72 LEU 72 213 213 LEU LEU A . n A 1 73 GLN 73 214 214 GLN GLN A . n A 1 74 LEU 74 215 215 LEU LEU A . n A 1 75 ARG 75 216 216 ARG ARG A . n A 1 76 GLY 76 217 217 GLY GLY A . n A 1 77 GLU 77 218 218 GLU GLU A . n A 1 78 ASP 78 219 219 ASP ASP A . n A 1 79 GLY 79 220 220 GLY GLY A . n A 1 80 SER 80 221 221 SER SER A . n A 1 81 VAL 81 222 222 VAL VAL A . n A 1 82 TRP 82 223 223 TRP TRP A . n A 1 83 ASN 83 224 224 ASN ASN A . n A 1 84 TYR 84 225 225 TYR TYR A . n A 1 85 LYS 85 226 226 LYS LYS A . n A 1 86 PRO 86 227 227 PRO PRO A . n A 1 87 PRO 87 228 228 PRO PRO A . n A 1 88 ALA 88 229 229 ALA ALA A . n A 1 89 ASP 89 230 230 ASP ASP A . n A 1 90 SER 90 231 231 SER SER A . n A 1 91 GLY 91 232 232 GLY GLY A . n A 1 92 GLY 92 233 233 GLY GLY A . n A 1 93 LYS 93 234 234 LYS LYS A . n A 1 94 GLU 94 235 235 GLU GLU A . n A 1 95 ILE 95 236 236 ILE ILE A . n A 1 96 PHE 96 237 237 PHE PHE A . n A 1 97 SER 97 238 238 SER SER A . n A 1 98 LEU 98 239 239 LEU LEU A . n A 1 99 LEU 99 240 240 LEU LEU A . n A 1 100 PRO 100 241 241 PRO PRO A . n A 1 101 HIS 101 242 242 HIS HIS A . n A 1 102 MET 102 243 243 MET MET A . n A 1 103 ALA 103 244 244 ALA ALA A . n A 1 104 ASP 104 245 245 ASP ASP A . n A 1 105 MET 105 246 246 MET MET A . n A 1 106 SER 106 247 247 SER SER A . n A 1 107 THR 107 248 248 THR THR A . n A 1 108 TYR 108 249 249 TYR TYR A . n A 1 109 MET 109 250 250 MET MET A . n A 1 110 PHE 110 251 251 PHE PHE A . n A 1 111 LYS 111 252 252 LYS LYS A . n A 1 112 GLY 112 253 253 GLY GLY A . n A 1 113 ILE 113 254 254 ILE ILE A . n A 1 114 ILE 114 255 255 ILE ILE A . n A 1 115 SER 115 256 256 SER SER A . n A 1 116 PHE 116 257 257 PHE PHE A . n A 1 117 ALA 117 258 258 ALA ALA A . n A 1 118 LYS 118 259 259 LYS LYS A . n A 1 119 VAL 119 260 260 VAL VAL A . n A 1 120 ILE 120 261 261 ILE ILE A . n A 1 121 SER 121 262 262 SER SER A . n A 1 122 TYR 122 263 263 TYR TYR A . n A 1 123 PHE 123 264 264 PHE PHE A . n A 1 124 ARG 124 265 265 ARG ARG A . n A 1 125 ASP 125 266 266 ASP ASP A . n A 1 126 LEU 126 267 267 LEU LEU A . n A 1 127 PRO 127 268 268 PRO PRO A . n A 1 128 ILE 128 269 269 ILE ILE A . n A 1 129 GLU 129 270 270 GLU GLU A . n A 1 130 ASP 130 271 271 ASP ASP A . n A 1 131 GLN 131 272 272 GLN GLN A . n A 1 132 ILE 132 273 273 ILE ILE A . n A 1 133 SER 133 274 274 SER SER A . n A 1 134 LEU 134 275 275 LEU LEU A . n A 1 135 LEU 135 276 276 LEU LEU A . n A 1 136 LYS 136 277 277 LYS LYS A . n A 1 137 GLY 137 278 278 GLY GLY A . n A 1 138 ALA 138 279 279 ALA ALA A . n A 1 139 ALA 139 280 280 ALA ALA A . n A 1 140 PHE 140 281 281 PHE PHE A . n A 1 141 GLU 141 282 282 GLU GLU A . n A 1 142 LEU 142 283 283 LEU LEU A . n A 1 143 CYS 143 284 284 CYS CYS A . n A 1 144 GLN 144 285 285 GLN GLN A . n A 1 145 LEU 145 286 286 LEU LEU A . n A 1 146 ARG 146 287 287 ARG ARG A . n A 1 147 PHE 147 288 288 PHE PHE A . n A 1 148 ASN 148 289 289 ASN ASN A . n A 1 149 THR 149 290 290 THR THR A . n A 1 150 VAL 150 291 291 VAL VAL A . n A 1 151 PHE 151 292 292 PHE PHE A . n A 1 152 ASN 152 293 293 ASN ASN A . n A 1 153 ALA 153 294 294 ALA ALA A . n A 1 154 GLU 154 295 295 GLU GLU A . n A 1 155 THR 155 296 296 THR THR A . n A 1 156 GLY 156 297 297 GLY GLY A . n A 1 157 THR 157 298 298 THR THR A . n A 1 158 TRP 158 299 299 TRP TRP A . n A 1 159 GLU 159 300 300 GLU GLU A . n A 1 160 CYS 160 301 301 CYS CYS A . n A 1 161 GLY 161 302 302 GLY GLY A . n A 1 162 ARG 162 303 303 ARG ARG A . n A 1 163 LEU 163 304 304 LEU LEU A . n A 1 164 SER 164 305 305 SER SER A . n A 1 165 TYR 165 306 306 TYR TYR A . n A 1 166 CYS 166 307 307 CYS CYS A . n A 1 167 LEU 167 308 308 LEU LEU A . n A 1 168 GLU 168 309 309 GLU GLU A . n A 1 169 ASP 169 310 ? ? ? A . n A 1 170 THR 170 311 ? ? ? A . n A 1 171 ALA 171 312 ? ? ? A . n A 1 172 GLY 172 313 ? ? ? A . n A 1 173 GLY 173 314 ? ? ? A . n A 1 174 PHE 174 315 ? ? ? A . n A 1 175 GLN 175 316 316 GLN GLN A . n A 1 176 GLN 176 317 317 GLN GLN A . n A 1 177 LEU 177 318 318 LEU LEU A . n A 1 178 LEU 178 319 319 LEU LEU A . n A 1 179 LEU 179 320 320 LEU LEU A . n A 1 180 GLU 180 321 321 GLU GLU A . n A 1 181 PRO 181 322 322 PRO PRO A . n A 1 182 MET 182 323 323 MET MET A . n A 1 183 LEU 183 324 324 LEU LEU A . n A 1 184 LYS 184 325 325 LYS LYS A . n A 1 185 PHE 185 326 326 PHE PHE A . n A 1 186 HIS 186 327 327 HIS HIS A . n A 1 187 TYR 187 328 328 TYR TYR A . n A 1 188 MET 188 329 329 MET MET A . n A 1 189 LEU 189 330 330 LEU LEU A . n A 1 190 LYS 190 331 331 LYS LYS A . n A 1 191 LYS 191 332 332 LYS LYS A . n A 1 192 LEU 192 333 333 LEU LEU A . n A 1 193 GLN 193 334 334 GLN GLN A . n A 1 194 LEU 194 335 335 LEU LEU A . n A 1 195 HIS 195 336 336 HIS HIS A . n A 1 196 GLU 196 337 337 GLU GLU A . n A 1 197 GLU 197 338 338 GLU GLU A . n A 1 198 GLU 198 339 339 GLU GLU A . n A 1 199 TYR 199 340 340 TYR TYR A . n A 1 200 VAL 200 341 341 VAL VAL A . n A 1 201 LEU 201 342 342 LEU LEU A . n A 1 202 MET 202 343 343 MET MET A . n A 1 203 GLN 203 344 344 GLN GLN A . n A 1 204 ALA 204 345 345 ALA ALA A . n A 1 205 ILE 205 346 346 ILE ILE A . n A 1 206 SER 206 347 347 SER SER A . n A 1 207 LEU 207 348 348 LEU LEU A . n A 1 208 PHE 208 349 349 PHE PHE A . n A 1 209 SER 209 350 350 SER SER A . n A 1 210 PRO 210 351 351 PRO PRO A . n A 1 211 ASP 211 352 352 ASP ASP A . n A 1 212 ARG 212 353 353 ARG ARG A . n A 1 213 PRO 213 354 354 PRO PRO A . n A 1 214 GLY 214 355 355 GLY GLY A . n A 1 215 VAL 215 356 356 VAL VAL A . n A 1 216 LEU 216 357 357 LEU LEU A . n A 1 217 GLN 217 358 358 GLN GLN A . n A 1 218 HIS 218 359 359 HIS HIS A . n A 1 219 ARG 219 360 360 ARG ARG A . n A 1 220 VAL 220 361 361 VAL VAL A . n A 1 221 VAL 221 362 362 VAL VAL A . n A 1 222 ASP 222 363 363 ASP ASP A . n A 1 223 GLN 223 364 364 GLN GLN A . n A 1 224 LEU 224 365 365 LEU LEU A . n A 1 225 GLN 225 366 366 GLN GLN A . n A 1 226 GLU 226 367 367 GLU GLU A . n A 1 227 GLN 227 368 368 GLN GLN A . n A 1 228 PHE 228 369 369 PHE PHE A . n A 1 229 ALA 229 370 370 ALA ALA A . n A 1 230 ILE 230 371 371 ILE ILE A . n A 1 231 THR 231 372 372 THR THR A . n A 1 232 LEU 232 373 373 LEU LEU A . n A 1 233 LYS 233 374 374 LYS LYS A . n A 1 234 SER 234 375 375 SER SER A . n A 1 235 TYR 235 376 376 TYR TYR A . n A 1 236 ILE 236 377 377 ILE ILE A . n A 1 237 GLU 237 378 378 GLU GLU A . n A 1 238 CYS 238 379 379 CYS CYS A . n A 1 239 ASN 239 380 380 ASN ASN A . n A 1 240 ARG 240 381 381 ARG ARG A . n A 1 241 PRO 241 382 382 PRO PRO A . n A 1 242 GLN 242 383 383 GLN GLN A . n A 1 243 PRO 243 384 384 PRO PRO A . n A 1 244 ALA 244 385 385 ALA ALA A . n A 1 245 HIS 245 386 386 HIS HIS A . n A 1 246 ARG 246 387 387 ARG ARG A . n A 1 247 PHE 247 388 388 PHE PHE A . n A 1 248 LEU 248 389 389 LEU LEU A . n A 1 249 PHE 249 390 390 PHE PHE A . n A 1 250 LEU 250 391 391 LEU LEU A . n A 1 251 LYS 251 392 392 LYS LYS A . n A 1 252 ILE 252 393 393 ILE ILE A . n A 1 253 MET 253 394 394 MET MET A . n A 1 254 ALA 254 395 395 ALA ALA A . n A 1 255 MET 255 396 396 MET MET A . n A 1 256 LEU 256 397 397 LEU LEU A . n A 1 257 THR 257 398 398 THR THR A . n A 1 258 GLU 258 399 399 GLU GLU A . n A 1 259 LEU 259 400 400 LEU LEU A . n A 1 260 ARG 260 401 401 ARG ARG A . n A 1 261 SER 261 402 402 SER SER A . n A 1 262 ILE 262 403 403 ILE ILE A . n A 1 263 ASN 263 404 404 ASN ASN A . n A 1 264 ALA 264 405 405 ALA ALA A . n A 1 265 GLN 265 406 406 GLN GLN A . n A 1 266 HIS 266 407 407 HIS HIS A . n A 1 267 THR 267 408 408 THR THR A . n A 1 268 GLN 268 409 409 GLN GLN A . n A 1 269 ARG 269 410 410 ARG ARG A . n A 1 270 LEU 270 411 411 LEU LEU A . n A 1 271 LEU 271 412 412 LEU LEU A . n A 1 272 ARG 272 413 413 ARG ARG A . n A 1 273 ILE 273 414 414 ILE ILE A . n A 1 274 GLN 274 415 415 GLN GLN A . n A 1 275 ASP 275 416 416 ASP ASP A . n A 1 276 ILE 276 417 417 ILE ILE A . n A 1 277 HIS 277 418 418 HIS HIS A . n A 1 278 PRO 278 419 419 PRO PRO A . n A 1 279 PHE 279 420 420 PHE PHE A . n A 1 280 ALA 280 421 421 ALA ALA A . n A 1 281 THR 281 422 422 THR THR A . n A 1 282 PRO 282 423 423 PRO PRO A . n A 1 283 LEU 283 424 424 LEU LEU A . n A 1 284 MET 284 425 425 MET MET A . n A 1 285 GLN 285 426 426 GLN GLN A . n A 1 286 GLU 286 427 427 GLU GLU A . n A 1 287 LEU 287 428 428 LEU LEU A . n A 1 288 PHE 288 429 429 PHE PHE A . n A 1 289 GLY 289 430 430 GLY GLY A . n A 1 290 ILE 290 431 431 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2Q4 1 501 1 2Q4 LG1 A . C 3 GOL 1 502 1 GOL GOL A . D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 3 HOH HOH A . D 4 HOH 4 604 4 HOH HOH A . D 4 HOH 5 605 5 HOH HOH A . D 4 HOH 6 606 6 HOH HOH A . D 4 HOH 7 607 7 HOH HOH A . D 4 HOH 8 608 9 HOH HOH A . D 4 HOH 9 609 10 HOH HOH A . D 4 HOH 10 610 11 HOH HOH A . D 4 HOH 11 611 13 HOH HOH A . D 4 HOH 12 612 16 HOH HOH A . D 4 HOH 13 613 18 HOH HOH A . D 4 HOH 14 614 19 HOH HOH A . D 4 HOH 15 615 20 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1810 ? 2 MORE -8 ? 2 'SSA (A^2)' 26290 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 42.8255000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-08-27 2 'Structure model' 1 1 2014-12-10 3 'Structure model' 1 2 2017-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 BUSTER-TNT 'REFMAC 5.2.0019' ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 REFMAC 5.2.0019 ? ? ? ? refinement ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 163 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 612 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 203 ? ? -164.48 6.58 2 1 LYS A 234 ? ? 140.50 -25.30 3 1 CYS A 301 ? ? -102.98 70.72 4 1 GLN A 317 ? ? 58.05 87.13 5 1 ASP A 352 ? ? -101.23 64.93 6 1 PRO A 354 ? ? -23.21 120.52 7 1 PRO A 384 ? ? -57.05 -2.16 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 177 ? A VAL 36 2 1 Y 1 A LEU 178 ? A LEU 37 3 1 Y 1 A SER 179 ? A SER 38 4 1 Y 1 A SER 180 ? A SER 39 5 1 Y 1 A GLY 181 ? A GLY 40 6 1 Y 1 A CYS 182 ? A CYS 41 7 1 Y 1 A GLU 183 ? A GLU 42 8 1 Y 1 A LEU 184 ? A LEU 43 9 1 Y 1 A PRO 185 ? A PRO 44 10 1 Y 1 A GLU 186 ? A GLU 45 11 1 Y 1 A SER 187 ? A SER 46 12 1 Y 1 A LEU 188 ? A LEU 47 13 1 Y 1 A GLN 189 ? A GLN 48 14 1 Y 1 A ALA 190 ? A ALA 49 15 1 Y 1 A PRO 191 ? A PRO 50 16 1 Y 1 A SER 192 ? A SER 51 17 1 Y 1 A ARG 193 ? A ARG 52 18 1 Y 1 A GLU 194 ? A GLU 53 19 1 Y 1 A GLU 195 ? A GLU 54 20 1 Y 1 A ALA 196 ? A ALA 55 21 1 Y 1 A ALA 197 ? A ALA 56 22 1 Y 1 A LYS 198 ? A LYS 57 23 1 Y 1 A TRP 199 ? A TRP 58 24 1 Y 1 A SER 200 ? A SER 59 25 1 Y 1 A ASP 310 ? A ASP 169 26 1 Y 1 A THR 311 ? A THR 170 27 1 Y 1 A ALA 312 ? A ALA 171 28 1 Y 1 A GLY 313 ? A GLY 172 29 1 Y 1 A GLY 314 ? A GLY 173 30 1 Y 1 A PHE 315 ? A PHE 174 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide' 2Q4 3 GLYCEROL GOL 4 water HOH #