data_4NYC # _entry.id 4NYC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4NYC pdb_00004nyc 10.2210/pdb4nyc/pdb NDB NA2828 ? ? RCSB RCSB083809 ? ? WWPDB D_1000083809 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NYA 'Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine' unspecified PDB 4NYB 'Crystal structure of the E. coli thiM riboswitch in complex with (4-(1,2,3-thiadiazol-4-yl)phenyl)methanamine' unspecified PDB 4NYD 'Crystal structure of the E. coli thiM riboswitch in complex with hypoxanthine' unspecified PDB 4NYG 'Crystal structure of the E. coli thiM riboswitch in complex with thiamine' unspecified # _pdbx_database_status.entry_id 4NYC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-10 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Warner, K.D.' 1 'Homan, P.' 2 'Weeks, K.M.' 3 'Smith, A.G.' 4 'Abell, C.' 5 ;Ferre-D'Amare, A.R. ; 6 # _citation.id primary _citation.title 'Validating Fragment-Based Drug Discovery for Biological RNAs: Lead Fragments Bind and Remodel the TPP Riboswitch Specifically.' _citation.journal_abbrev Chem.Biol. _citation.journal_volume 21 _citation.page_first 591 _citation.page_last 595 _citation.year 2014 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1074-5521 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24768306 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2014.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Warner, K.D.' 1 ? primary 'Homan, P.' 2 ? primary 'Weeks, K.M.' 3 ? primary 'Smith, A.G.' 4 ? primary 'Abell, C.' 5 ? primary ;Ferre-D'Amare, A.R. ; 6 ? # _cell.length_a 65.122 _cell.length_b 65.122 _cell.length_c 101.975 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4NYC _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.entry_id 4NYC _symmetry.Int_Tables_number 153 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'thiM TPP riboswitch' 26860.900 1 ? ? ? ? 2 non-polymer syn 'thieno[2,3-b]pyrazin-7-amine' 151.189 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 11 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 5 ? ? ? ? 5 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _entity_poly.pdbx_seq_one_letter_code_can ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 C n 1 6 U n 1 7 C n 1 8 G n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 C n 1 15 C n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 U n 1 21 G n 1 22 C n 1 23 G n 1 24 U n 1 25 G n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 A n 1 34 G n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 A n 1 40 C n 1 41 C n 1 42 C n 1 43 G n 1 44 U n 1 45 A n 1 46 U n 1 47 C n 1 48 A n 1 49 C n 1 50 C n 1 51 U n 1 52 G n 1 53 A n 1 54 U n 1 55 C n 1 56 U n 1 57 G n 1 58 G n 1 59 A n 1 60 U n 1 61 A n 1 62 A n 1 63 U n 1 64 G n 1 65 C n 1 66 C n 1 67 A n 1 68 G n 1 69 C n 1 70 G n 1 71 U n 1 72 A n 1 73 G n 1 74 G n 1 75 G n 1 76 A n 1 77 A n 1 78 G n 1 79 U n 1 80 C n 1 81 G n 1 82 C n 1 83 A23 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4NYC _struct_ref.pdbx_db_accession 4NYC _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;GCGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUC GC(A23) ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NYC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 83 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4NYC _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 91 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 9 _struct_ref_seq.pdbx_auth_seq_align_end 91 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A23 'RNA linking' n ;ADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C10 H13 N5 O9 P2' 409.186 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 SVN non-polymer . 'thieno[2,3-b]pyrazin-7-amine' ? 'C6 H5 N3 S' 151.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.crystals_number 1 _exptl.entry_id 4NYC _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;30% PEG2000, 0.5 M ammonium chloride, 50 mM Bis-Tris-HCl, pH 6.5, 10 mM manganese chloride, VAPOR DIFFUSION, HANGING DROP, temperature 294K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2012-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Asymmetric curved crystal Si(220)' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97741 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97741 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 # _reflns.entry_id 4NYC _reflns.d_resolution_high 3.150 _reflns.d_resolution_low 30.0 _reflns.number_obs 4467 _reflns.pdbx_Rmerge_I_obs 0.111 _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.pdbx_chi_squared 1.423 _reflns.pdbx_redundancy 10.7 _reflns.percent_possible_obs 100.0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 3.150 3.200 ? ? ? ? ? ? 0.968 10.90 ? 219 100.0 1 1 3.200 3.260 ? ? ? 0.758 ? ? 1.017 10.80 ? 224 100.0 2 1 3.260 3.330 ? ? ? 0.620 ? ? 1.028 11.10 ? 215 100.0 3 1 3.330 3.390 ? ? ? 0.558 ? ? 1.130 10.90 ? 227 100.0 4 1 3.390 3.470 ? ? ? 0.557 ? ? 1.081 11.00 ? 212 100.0 5 1 3.470 3.550 ? ? ? 0.525 ? ? 1.106 10.90 ? 216 100.0 6 1 3.550 3.640 ? ? ? 0.407 ? ? 1.204 10.70 ? 228 100.0 7 1 3.640 3.730 ? ? ? 0.367 ? ? 1.124 11.00 ? 212 100.0 8 1 3.730 3.840 ? ? ? 0.298 ? ? 1.286 10.90 ? 230 100.0 9 1 3.840 3.970 ? ? ? 0.240 ? ? 1.093 10.90 ? 204 100.0 10 1 3.970 4.110 ? ? ? 0.220 ? ? 1.182 10.70 ? 238 100.0 11 1 4.110 4.270 ? ? ? 0.200 ? ? 1.278 10.90 ? 210 100.0 12 1 4.270 4.470 ? ? ? 0.164 ? ? 1.462 10.80 ? 228 100.0 13 1 4.470 4.700 ? ? ? 0.131 ? ? 1.324 10.60 ? 230 100.0 14 1 4.700 4.990 ? ? ? 0.106 ? ? 1.469 10.90 ? 216 100.0 15 1 4.990 5.380 ? ? ? 0.092 ? ? 1.873 10.50 ? 229 100.0 16 1 5.380 5.920 ? ? ? 0.083 ? ? 2.297 10.50 ? 226 100.0 17 1 5.920 6.760 ? ? ? 0.080 ? ? 2.402 10.10 ? 222 100.0 18 1 6.760 8.490 ? ? ? 0.058 ? ? 2.008 9.90 ? 233 100.0 19 1 8.490 30.000 ? ? ? 0.035 ? ? 2.225 9.80 ? 248 99.2 20 1 # _refine.entry_id 4NYC _refine.ls_d_res_high 3.150 _refine.ls_d_res_low 30.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.4 _refine.ls_number_reflns_obs 4193 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2019 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2639 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 438 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 99.5160 _refine.solvent_model_param_bsol 35.3566 _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 13.7980 _refine.aniso_B[2][2] 13.7980 _refine.aniso_B[3][3] -27.5950 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2HOJ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 159.040 _refine.B_iso_min 42.140 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1647 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 1678 _refine_hist.d_res_high 3.150 _refine_hist.d_res_low 30.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_bond_d ? 0.006 ? ? ? 'X-RAY DIFFRACTION' c_angle_d ? 1.194 ? ? ? 'X-RAY DIFFRACTION' c_mcbond_it ? 0.000 1.500 ? ? 'X-RAY DIFFRACTION' c_scbond_it ? 1.698 2.000 ? ? 'X-RAY DIFFRACTION' c_mcangle_it ? 0.000 2.000 ? ? 'X-RAY DIFFRACTION' c_scangle_it ? 2.831 2.500 ? ? 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 cycp-dna-rna_rep-12.param cycp-dna-rna-12.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' 5 svn.par svn.top 'X-RAY DIFFRACTION' # _struct.entry_id 4NYC _struct.title 'Crystal structure of the E. coli thiM riboswitch in complex with thieno[2,3-b]pyrazin-7-amine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NYC _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'fragment-based drug discovery, riboswitch, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 82 "O3'" ? ? ? 1_555 A A23 83 P ? ? A C 90 A A23 91 1_555 ? ? ? ? ? ? ? 1.589 ? ? metalc1 metalc ? ? A G 32 N7 ? ? ? 1_555 H MN . MN ? ? A G 40 A MN 107 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc2 metalc ? ? A A 33 N7 ? ? ? 1_555 E MN . MN ? ? A A 41 A MN 104 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc3 metalc ? ? A C 49 "O2'" ? ? ? 1_555 C MG . MG ? ? A C 57 A MG 102 1_555 ? ? ? ? ? ? ? 2.881 ? ? metalc4 metalc ? ? A G 52 O6 ? ? ? 1_555 K MN . MN ? ? A G 60 A MN 110 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc5 metalc ? ? A C 55 OP1 ? ? ? 1_555 D MN . MN ? ? A C 63 A MN 103 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc6 metalc ? ? A U 56 OP2 ? ? ? 1_555 D MN . MN ? ? A U 64 A MN 103 1_555 ? ? ? ? ? ? ? 2.236 ? ? metalc7 metalc ? ? A A 61 OP1 ? ? ? 1_555 G MG . MG ? ? A A 69 A MG 106 1_555 ? ? ? ? ? ? ? 2.126 ? ? metalc8 metalc ? ? A G 64 N1 ? ? ? 1_555 K MN . MN ? ? A G 72 A MN 110 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc9 metalc ? ? A G 64 O6 ? ? ? 1_555 M MG . MG ? ? A G 72 A MG 112 1_555 ? ? ? ? ? ? ? 2.494 ? ? metalc10 metalc ? ? A G 70 O6 ? ? ? 1_555 K MN . MN ? ? A G 78 A MN 110 1_555 ? ? ? ? ? ? ? 2.431 ? ? metalc11 metalc ? ? A G 81 OP2 ? ? ? 1_555 L MG . MG ? ? A G 89 A MG 111 1_555 ? ? ? ? ? ? ? 2.889 ? ? metalc12 metalc ? ? A A23 83 OP1 ? ? ? 1_555 J MN . MN ? ? A A23 91 A MN 109 1_555 ? ? ? ? ? ? ? 2.635 ? ? metalc13 metalc ? ? H MN . MN ? ? ? 1_555 S HOH . O ? ? A MN 107 A HOH 202 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc14 metalc ? ? H MN . MN ? ? ? 1_555 S HOH . O ? ? A MN 107 A HOH 205 1_555 ? ? ? ? ? ? ? 2.378 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 9 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 10 A G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 80 N3 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 80 O2 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 80 N4 ? ? A G 11 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 79 N3 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 79 O4 ? ? A A 12 A U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 13 A G 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 77 N1 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 77 N6 ? ? A U 14 A A 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 16 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 17 A C 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 9 N2 ? ? ? 1_555 A A 48 N3 ? ? A G 17 A A 56 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 18 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 34 N3 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog31 hydrog ? ? A G 11 N3 ? ? ? 1_555 A G 34 N2 ? ? A G 19 A G 42 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog32 hydrog ? ? A G 11 N1 ? ? ? 1_555 A A 39 N1 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog33 hydrog ? ? A G 11 O6 ? ? ? 1_555 A A 39 N6 ? ? A G 19 A A 47 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog34 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 37 N1 ? ? A U 20 A A 45 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog35 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 21 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 A U 63 O2 ? ? A G 21 A U 71 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 22 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 27 N6 ? ? A C 24 A A 35 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 35 N7 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog47 hydrog ? ? A U 31 O2 ? ? ? 1_555 A A 35 N6 ? ? A U 39 A A 43 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog48 hydrog ? ? A A 48 N7 ? ? ? 1_555 A G 75 N2 ? ? A A 56 A G 83 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 57 A G 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 58 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A U 51 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 59 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 52 N1 ? ? ? 1_555 A G 70 O6 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog58 hydrog ? ? A G 52 N2 ? ? ? 1_555 A G 70 N7 ? ? A G 60 A G 78 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog59 hydrog ? ? A A 53 N6 ? ? ? 1_555 A C 69 O2 ? ? A A 61 A C 77 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog60 hydrog ? ? A C 55 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 55 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 55 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 63 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 56 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 56 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 64 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 65 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 66 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SVN 101 ? 5 'BINDING SITE FOR RESIDUE SVN A 101' AC2 Software A MG 102 ? 2 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MN 103 ? 3 'BINDING SITE FOR RESIDUE MN A 103' AC4 Software A MN 104 ? 1 'BINDING SITE FOR RESIDUE MN A 104' AC5 Software A MG 105 ? 2 'BINDING SITE FOR RESIDUE MG A 105' AC6 Software A MG 106 ? 2 'BINDING SITE FOR RESIDUE MG A 106' AC7 Software A MN 107 ? 3 'BINDING SITE FOR RESIDUE MN A 107' AC8 Software A MN 109 ? 2 'BINDING SITE FOR RESIDUE MN A 109' AC9 Software A MN 110 ? 4 'BINDING SITE FOR RESIDUE MN A 110' BC1 Software A MG 111 ? 1 'BINDING SITE FOR RESIDUE MG A 111' BC2 Software A MG 112 ? 4 'BINDING SITE FOR RESIDUE MG A 112' BC3 Software A MG 113 ? 1 'BINDING SITE FOR RESIDUE MG A 113' BC4 Software A MG 114 ? 1 'BINDING SITE FOR RESIDUE MG A 114' BC5 Software A MG 115 ? 1 'BINDING SITE FOR RESIDUE MG A 115' BC6 Software A MG 116 ? 1 'BINDING SITE FOR RESIDUE MG A 116' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G A 11 ? G A 19 . ? 1_555 ? 2 AC1 5 U A 12 ? U A 20 . ? 1_555 ? 3 AC1 5 G A 32 ? G A 40 . ? 1_555 ? 4 AC1 5 G A 34 ? G A 42 . ? 1_555 ? 5 AC1 5 A A 35 ? A A 43 . ? 1_555 ? 6 AC2 2 G A 10 ? G A 18 . ? 1_555 ? 7 AC2 2 C A 49 ? C A 57 . ? 1_555 ? 8 AC3 3 C A 55 ? C A 63 . ? 1_555 ? 9 AC3 3 U A 56 ? U A 64 . ? 4_555 ? 10 AC3 3 U A 56 ? U A 64 . ? 1_555 ? 11 AC4 1 A A 33 ? A A 41 . ? 1_555 ? 12 AC5 2 A A 27 ? A A 35 . ? 1_555 ? 13 AC5 2 G A 28 ? G A 36 . ? 1_555 ? 14 AC6 2 A A 61 ? A A 69 . ? 1_555 ? 15 AC6 2 A23 A 83 ? A23 A 91 . ? 5_654 ? 16 AC7 3 G A 32 ? G A 40 . ? 1_555 ? 17 AC7 3 HOH S . ? HOH A 202 . ? 1_555 ? 18 AC7 3 HOH S . ? HOH A 205 . ? 1_555 ? 19 AC8 2 A A 61 ? A A 69 . ? 5_654 ? 20 AC8 2 A23 A 83 ? A23 A 91 . ? 1_555 ? 21 AC9 4 U A 51 ? U A 59 . ? 1_555 ? 22 AC9 4 G A 52 ? G A 60 . ? 1_555 ? 23 AC9 4 G A 64 ? G A 72 . ? 1_555 ? 24 AC9 4 G A 70 ? G A 78 . ? 1_555 ? 25 BC1 1 G A 81 ? G A 89 . ? 1_555 ? 26 BC2 4 U A 51 ? U A 59 . ? 1_555 ? 27 BC2 4 G A 52 ? G A 60 . ? 1_555 ? 28 BC2 4 A A 53 ? A A 61 . ? 1_555 ? 29 BC2 4 G A 64 ? G A 72 . ? 1_555 ? 30 BC3 1 G A 9 ? G A 17 . ? 1_555 ? 31 BC4 1 U A 56 ? U A 64 . ? 1_555 ? 32 BC5 1 A A 33 ? A A 41 . ? 1_555 ? 33 BC6 1 A A 53 ? A A 61 . ? 1_555 ? # _atom_sites.entry_id 4NYC _atom_sites.fract_transf_matrix[1][1] 0.015356 _atom_sites.fract_transf_matrix[1][2] 0.008866 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017731 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009806 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 9 9 G G A . n A 1 2 C 2 10 10 C C A . n A 1 3 G 3 11 11 G G A . n A 1 4 A 4 12 12 A A A . n A 1 5 C 5 13 13 C C A . n A 1 6 U 6 14 14 U U A . n A 1 7 C 7 15 15 C C A . n A 1 8 G 8 16 16 G G A . n A 1 9 G 9 17 17 G G A . n A 1 10 G 10 18 18 G G A . n A 1 11 G 11 19 19 G G A . n A 1 12 U 12 20 20 U U A . n A 1 13 G 13 21 21 G G A . n A 1 14 C 14 22 22 C C A . n A 1 15 C 15 23 23 C C A . n A 1 16 C 16 24 24 C C A . n A 1 17 U 17 25 25 U U A . n A 1 18 U 18 26 26 U U A . n A 1 19 C 19 27 ? ? ? A . n A 1 20 U 20 28 ? ? ? A . n A 1 21 G 21 29 ? ? ? A . n A 1 22 C 22 30 30 C C A . n A 1 23 G 23 31 31 G G A . n A 1 24 U 24 32 32 U U A . n A 1 25 G 25 33 33 G G A . n A 1 26 A 26 34 34 A A A . n A 1 27 A 27 35 35 A A A . n A 1 28 G 28 36 36 G G A . n A 1 29 G 29 37 37 G G A . n A 1 30 C 30 38 38 C C A . n A 1 31 U 31 39 39 U U A . n A 1 32 G 32 40 40 G G A . n A 1 33 A 33 41 41 A A A . n A 1 34 G 34 42 42 G G A . n A 1 35 A 35 43 43 A A A . n A 1 36 A 36 44 44 A A A . n A 1 37 A 37 45 45 A A A . n A 1 38 U 38 46 46 U U A . n A 1 39 A 39 47 47 A A A . n A 1 40 C 40 48 48 C C A . n A 1 41 C 41 49 49 C C A . n A 1 42 C 42 50 50 C C A . n A 1 43 G 43 51 51 G G A . n A 1 44 U 44 52 52 U U A . n A 1 45 A 45 53 53 A A A . n A 1 46 U 46 54 54 U U A . n A 1 47 C 47 55 55 C C A . n A 1 48 A 48 56 56 A A A . n A 1 49 C 49 57 57 C C A . n A 1 50 C 50 58 58 C C A . n A 1 51 U 51 59 59 U U A . n A 1 52 G 52 60 60 G G A . n A 1 53 A 53 61 61 A A A . n A 1 54 U 54 62 62 U U A . n A 1 55 C 55 63 63 C C A . n A 1 56 U 56 64 64 U U A . n A 1 57 G 57 65 65 G G A . n A 1 58 G 58 66 66 G G A . n A 1 59 A 59 67 67 A A A . n A 1 60 U 60 68 68 U U A . n A 1 61 A 61 69 69 A A A . n A 1 62 A 62 70 70 A A A . n A 1 63 U 63 71 71 U U A . n A 1 64 G 64 72 72 G G A . n A 1 65 C 65 73 73 C C A . n A 1 66 C 66 74 74 C C A . n A 1 67 A 67 75 75 A A A . n A 1 68 G 68 76 76 G G A . n A 1 69 C 69 77 77 C C A . n A 1 70 G 70 78 78 G G A . n A 1 71 U 71 79 79 U U A . n A 1 72 A 72 80 80 A A A . n A 1 73 G 73 81 81 G G A . n A 1 74 G 74 82 82 G G A . n A 1 75 G 75 83 83 G G A . n A 1 76 A 76 84 84 A A A . n A 1 77 A 77 85 85 A A A . n A 1 78 G 78 86 86 G G A . n A 1 79 U 79 87 87 U U A . n A 1 80 C 80 88 88 C C A . n A 1 81 G 81 89 89 G G A . n A 1 82 C 82 90 90 C C A . n A 1 83 A23 83 91 91 A23 A23 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SVN 1 101 1 SVN SVN A . C 3 MG 1 102 105 MG MG A . D 4 MN 1 103 100 MN MN A . E 4 MN 1 104 101 MN MN A . F 3 MG 1 105 102 MG MG A . G 3 MG 1 106 103 MG MG A . H 4 MN 1 107 104 MN MN A . I 3 MG 1 108 106 MG MG A . J 4 MN 1 109 107 MN MN A . K 4 MN 1 110 111 MN MN A . L 3 MG 1 111 113 MG MG A . M 3 MG 1 112 115 MG MG A . N 3 MG 1 113 116 MG MG A . O 3 MG 1 114 118 MG MG A . P 3 MG 1 115 119 MG MG A . Q 3 MG 1 116 120 MG MG A . R 3 MG 1 117 121 MG MG A . S 5 HOH 1 201 108 HOH HOH A . S 5 HOH 2 202 109 HOH HOH A . S 5 HOH 3 203 110 HOH HOH A . S 5 HOH 4 204 112 HOH HOH A . S 5 HOH 5 205 117 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id A23 _pdbx_struct_mod_residue.label_seq_id 83 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id A23 _pdbx_struct_mod_residue.auth_seq_id 91 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id A _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A G 32 ? A G 40 ? 1_555 MN ? H MN . ? A MN 107 ? 1_555 O ? S HOH . ? A HOH 202 ? 1_555 78.0 ? 2 N7 ? A G 32 ? A G 40 ? 1_555 MN ? H MN . ? A MN 107 ? 1_555 O ? S HOH . ? A HOH 205 ? 1_555 78.2 ? 3 O ? S HOH . ? A HOH 202 ? 1_555 MN ? H MN . ? A MN 107 ? 1_555 O ? S HOH . ? A HOH 205 ? 1_555 69.0 ? 4 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 N1 ? A G 64 ? A G 72 ? 1_555 114.5 ? 5 O6 ? A G 52 ? A G 60 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 83.8 ? 6 N1 ? A G 64 ? A G 72 ? 1_555 MN ? K MN . ? A MN 110 ? 1_555 O6 ? A G 70 ? A G 78 ? 1_555 145.5 ? 7 OP1 ? A C 55 ? A C 63 ? 1_555 MN ? D MN . ? A MN 103 ? 1_555 OP2 ? A U 56 ? A U 64 ? 1_555 79.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-04 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.value' 16 2 'Structure model' '_struct_conn.pdbx_dist_value' 17 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 18 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? 6 PHASER . ? ? ? ? phasing ? ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O6 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G _pdbx_validate_symm_contact.auth_seq_id_1 31 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O6 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 G _pdbx_validate_symm_contact.auth_seq_id_2 31 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_665 _pdbx_validate_symm_contact.dist 1.86 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 26 ? "C5'" ? A U 18 "C5'" 2 1 Y 1 A U 26 ? "C4'" ? A U 18 "C4'" 3 1 Y 1 A U 26 ? "O4'" ? A U 18 "O4'" 4 1 Y 1 A U 26 ? "C3'" ? A U 18 "C3'" 5 1 Y 1 A U 26 ? "O3'" ? A U 18 "O3'" 6 1 Y 1 A U 26 ? "C2'" ? A U 18 "C2'" 7 1 Y 1 A U 26 ? "O2'" ? A U 18 "O2'" 8 1 Y 1 A U 26 ? "C1'" ? A U 18 "C1'" 9 1 Y 1 A U 26 ? N1 ? A U 18 N1 10 1 Y 1 A U 26 ? C2 ? A U 18 C2 11 1 Y 1 A U 26 ? O2 ? A U 18 O2 12 1 Y 1 A U 26 ? N3 ? A U 18 N3 13 1 Y 1 A U 26 ? C4 ? A U 18 C4 14 1 Y 1 A U 26 ? O4 ? A U 18 O4 15 1 Y 1 A U 26 ? C5 ? A U 18 C5 16 1 Y 1 A U 26 ? C6 ? A U 18 C6 17 1 Y 1 A U 46 ? N1 ? A U 38 N1 18 1 Y 1 A U 46 ? C2 ? A U 38 C2 19 1 Y 1 A U 46 ? O2 ? A U 38 O2 20 1 Y 1 A U 46 ? N3 ? A U 38 N3 21 1 Y 1 A U 46 ? C4 ? A U 38 C4 22 1 Y 1 A U 46 ? O4 ? A U 38 O4 23 1 Y 1 A U 46 ? C5 ? A U 38 C5 24 1 Y 1 A U 46 ? C6 ? A U 38 C6 25 1 Y 1 A U 52 ? N1 ? A U 44 N1 26 1 Y 1 A U 52 ? C2 ? A U 44 C2 27 1 Y 1 A U 52 ? O2 ? A U 44 O2 28 1 Y 1 A U 52 ? N3 ? A U 44 N3 29 1 Y 1 A U 52 ? C4 ? A U 44 C4 30 1 Y 1 A U 52 ? O4 ? A U 44 O4 31 1 Y 1 A U 52 ? C5 ? A U 44 C5 32 1 Y 1 A U 52 ? C6 ? A U 44 C6 33 1 Y 1 A A 53 ? N9 ? A A 45 N9 34 1 Y 1 A A 53 ? C8 ? A A 45 C8 35 1 Y 1 A A 53 ? N7 ? A A 45 N7 36 1 Y 1 A A 53 ? C5 ? A A 45 C5 37 1 Y 1 A A 53 ? C6 ? A A 45 C6 38 1 Y 1 A A 53 ? N6 ? A A 45 N6 39 1 Y 1 A A 53 ? N1 ? A A 45 N1 40 1 Y 1 A A 53 ? C2 ? A A 45 C2 41 1 Y 1 A A 53 ? N3 ? A A 45 N3 42 1 Y 1 A A 53 ? C4 ? A A 45 C4 43 1 Y 1 A U 54 ? N1 ? A U 46 N1 44 1 Y 1 A U 54 ? C2 ? A U 46 C2 45 1 Y 1 A U 54 ? O2 ? A U 46 O2 46 1 Y 1 A U 54 ? N3 ? A U 46 N3 47 1 Y 1 A U 54 ? C4 ? A U 46 C4 48 1 Y 1 A U 54 ? O4 ? A U 46 O4 49 1 Y 1 A U 54 ? C5 ? A U 46 C5 50 1 Y 1 A U 54 ? C6 ? A U 46 C6 51 1 Y 1 A C 55 ? N1 ? A C 47 N1 52 1 Y 1 A C 55 ? C2 ? A C 47 C2 53 1 Y 1 A C 55 ? O2 ? A C 47 O2 54 1 Y 1 A C 55 ? N3 ? A C 47 N3 55 1 Y 1 A C 55 ? C4 ? A C 47 C4 56 1 Y 1 A C 55 ? N4 ? A C 47 N4 57 1 Y 1 A C 55 ? C5 ? A C 47 C5 58 1 Y 1 A C 55 ? C6 ? A C 47 C6 59 1 Y 1 A U 79 ? N1 ? A U 71 N1 60 1 Y 1 A U 79 ? C2 ? A U 71 C2 61 1 Y 1 A U 79 ? O2 ? A U 71 O2 62 1 Y 1 A U 79 ? N3 ? A U 71 N3 63 1 Y 1 A U 79 ? C4 ? A U 71 C4 64 1 Y 1 A U 79 ? O4 ? A U 71 O4 65 1 Y 1 A U 79 ? C5 ? A U 71 C5 66 1 Y 1 A U 79 ? C6 ? A U 71 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 27 ? A C 19 2 1 Y 1 A U 28 ? A U 20 3 1 Y 1 A G 29 ? A G 21 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A23 PC P N S 38 A23 O1C O N N 39 A23 O2C O N N 40 A23 P P N N 41 A23 OP1 O N N 42 A23 OP2 O N N 43 A23 OP3 O N N 44 A23 "O5'" O N N 45 A23 "C5'" C N N 46 A23 "C4'" C N R 47 A23 "O4'" O N N 48 A23 "C3'" C N R 49 A23 "O3'" O N N 50 A23 "C2'" C N R 51 A23 "O2'" O N N 52 A23 "C1'" C N R 53 A23 N9 N Y N 54 A23 C8 C Y N 55 A23 N7 N Y N 56 A23 C5 C Y N 57 A23 C6 C Y N 58 A23 N6 N N N 59 A23 N1 N Y N 60 A23 C2 C Y N 61 A23 N3 N Y N 62 A23 C4 C Y N 63 A23 HOC2 H N N 64 A23 HOP2 H N N 65 A23 HOP3 H N N 66 A23 "H5'" H N N 67 A23 "H5''" H N N 68 A23 "H4'" H N N 69 A23 "H3'" H N N 70 A23 "H2'" H N N 71 A23 "H1'" H N N 72 A23 H8 H N N 73 A23 HN61 H N N 74 A23 HN62 H N N 75 A23 H2 H N N 76 C OP3 O N N 77 C P P N N 78 C OP1 O N N 79 C OP2 O N N 80 C "O5'" O N N 81 C "C5'" C N N 82 C "C4'" C N R 83 C "O4'" O N N 84 C "C3'" C N S 85 C "O3'" O N N 86 C "C2'" C N R 87 C "O2'" O N N 88 C "C1'" C N R 89 C N1 N N N 90 C C2 C N N 91 C O2 O N N 92 C N3 N N N 93 C C4 C N N 94 C N4 N N N 95 C C5 C N N 96 C C6 C N N 97 C HOP3 H N N 98 C HOP2 H N N 99 C "H5'" H N N 100 C "H5''" H N N 101 C "H4'" H N N 102 C "H3'" H N N 103 C "HO3'" H N N 104 C "H2'" H N N 105 C "HO2'" H N N 106 C "H1'" H N N 107 C H41 H N N 108 C H42 H N N 109 C H5 H N N 110 C H6 H N N 111 G OP3 O N N 112 G P P N N 113 G OP1 O N N 114 G OP2 O N N 115 G "O5'" O N N 116 G "C5'" C N N 117 G "C4'" C N R 118 G "O4'" O N N 119 G "C3'" C N S 120 G "O3'" O N N 121 G "C2'" C N R 122 G "O2'" O N N 123 G "C1'" C N R 124 G N9 N Y N 125 G C8 C Y N 126 G N7 N Y N 127 G C5 C Y N 128 G C6 C N N 129 G O6 O N N 130 G N1 N N N 131 G C2 C N N 132 G N2 N N N 133 G N3 N N N 134 G C4 C Y N 135 G HOP3 H N N 136 G HOP2 H N N 137 G "H5'" H N N 138 G "H5''" H N N 139 G "H4'" H N N 140 G "H3'" H N N 141 G "HO3'" H N N 142 G "H2'" H N N 143 G "HO2'" H N N 144 G "H1'" H N N 145 G H8 H N N 146 G H1 H N N 147 G H21 H N N 148 G H22 H N N 149 HOH O O N N 150 HOH H1 H N N 151 HOH H2 H N N 152 MG MG MG N N 153 MN MN MN N N 154 SVN CAD C Y N 155 SVN SAG S Y N 156 SVN CAI C Y N 157 SVN NAE N Y N 158 SVN CAB C Y N 159 SVN CAC C Y N 160 SVN NAF N Y N 161 SVN CAJ C Y N 162 SVN CAH C Y N 163 SVN NAA N N N 164 SVN H1 H N N 165 SVN H2 H N N 166 SVN H3 H N N 167 SVN H4 H N N 168 SVN H5 H N N 169 U OP3 O N N 170 U P P N N 171 U OP1 O N N 172 U OP2 O N N 173 U "O5'" O N N 174 U "C5'" C N N 175 U "C4'" C N R 176 U "O4'" O N N 177 U "C3'" C N S 178 U "O3'" O N N 179 U "C2'" C N R 180 U "O2'" O N N 181 U "C1'" C N R 182 U N1 N N N 183 U C2 C N N 184 U O2 O N N 185 U N3 N N N 186 U C4 C N N 187 U O4 O N N 188 U C5 C N N 189 U C6 C N N 190 U HOP3 H N N 191 U HOP2 H N N 192 U "H5'" H N N 193 U "H5''" H N N 194 U "H4'" H N N 195 U "H3'" H N N 196 U "HO3'" H N N 197 U "H2'" H N N 198 U "HO2'" H N N 199 U "H1'" H N N 200 U H3 H N N 201 U H5 H N N 202 U H6 H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A23 PC O1C doub N N 40 A23 PC O2C sing N N 41 A23 PC "O3'" sing N N 42 A23 PC "O2'" sing N N 43 A23 O2C HOC2 sing N N 44 A23 P OP1 doub N N 45 A23 P OP2 sing N N 46 A23 P OP3 sing N N 47 A23 P "O5'" sing N N 48 A23 OP2 HOP2 sing N N 49 A23 OP3 HOP3 sing N N 50 A23 "O5'" "C5'" sing N N 51 A23 "C5'" "C4'" sing N N 52 A23 "C5'" "H5'" sing N N 53 A23 "C5'" "H5''" sing N N 54 A23 "C4'" "O4'" sing N N 55 A23 "C4'" "C3'" sing N N 56 A23 "C4'" "H4'" sing N N 57 A23 "O4'" "C1'" sing N N 58 A23 "C3'" "O3'" sing N N 59 A23 "C3'" "C2'" sing N N 60 A23 "C3'" "H3'" sing N N 61 A23 "C2'" "O2'" sing N N 62 A23 "C2'" "C1'" sing N N 63 A23 "C2'" "H2'" sing N N 64 A23 "C1'" N9 sing N N 65 A23 "C1'" "H1'" sing N N 66 A23 N9 C8 sing Y N 67 A23 N9 C4 sing Y N 68 A23 C8 N7 doub Y N 69 A23 C8 H8 sing N N 70 A23 N7 C5 sing Y N 71 A23 C5 C6 sing Y N 72 A23 C5 C4 doub Y N 73 A23 C6 N6 sing N N 74 A23 C6 N1 doub Y N 75 A23 N6 HN61 sing N N 76 A23 N6 HN62 sing N N 77 A23 N1 C2 sing Y N 78 A23 C2 N3 doub Y N 79 A23 C2 H2 sing N N 80 A23 N3 C4 sing Y N 81 C OP3 P sing N N 82 C OP3 HOP3 sing N N 83 C P OP1 doub N N 84 C P OP2 sing N N 85 C P "O5'" sing N N 86 C OP2 HOP2 sing N N 87 C "O5'" "C5'" sing N N 88 C "C5'" "C4'" sing N N 89 C "C5'" "H5'" sing N N 90 C "C5'" "H5''" sing N N 91 C "C4'" "O4'" sing N N 92 C "C4'" "C3'" sing N N 93 C "C4'" "H4'" sing N N 94 C "O4'" "C1'" sing N N 95 C "C3'" "O3'" sing N N 96 C "C3'" "C2'" sing N N 97 C "C3'" "H3'" sing N N 98 C "O3'" "HO3'" sing N N 99 C "C2'" "O2'" sing N N 100 C "C2'" "C1'" sing N N 101 C "C2'" "H2'" sing N N 102 C "O2'" "HO2'" sing N N 103 C "C1'" N1 sing N N 104 C "C1'" "H1'" sing N N 105 C N1 C2 sing N N 106 C N1 C6 sing N N 107 C C2 O2 doub N N 108 C C2 N3 sing N N 109 C N3 C4 doub N N 110 C C4 N4 sing N N 111 C C4 C5 sing N N 112 C N4 H41 sing N N 113 C N4 H42 sing N N 114 C C5 C6 doub N N 115 C C5 H5 sing N N 116 C C6 H6 sing N N 117 G OP3 P sing N N 118 G OP3 HOP3 sing N N 119 G P OP1 doub N N 120 G P OP2 sing N N 121 G P "O5'" sing N N 122 G OP2 HOP2 sing N N 123 G "O5'" "C5'" sing N N 124 G "C5'" "C4'" sing N N 125 G "C5'" "H5'" sing N N 126 G "C5'" "H5''" sing N N 127 G "C4'" "O4'" sing N N 128 G "C4'" "C3'" sing N N 129 G "C4'" "H4'" sing N N 130 G "O4'" "C1'" sing N N 131 G "C3'" "O3'" sing N N 132 G "C3'" "C2'" sing N N 133 G "C3'" "H3'" sing N N 134 G "O3'" "HO3'" sing N N 135 G "C2'" "O2'" sing N N 136 G "C2'" "C1'" sing N N 137 G "C2'" "H2'" sing N N 138 G "O2'" "HO2'" sing N N 139 G "C1'" N9 sing N N 140 G "C1'" "H1'" sing N N 141 G N9 C8 sing Y N 142 G N9 C4 sing Y N 143 G C8 N7 doub Y N 144 G C8 H8 sing N N 145 G N7 C5 sing Y N 146 G C5 C6 sing N N 147 G C5 C4 doub Y N 148 G C6 O6 doub N N 149 G C6 N1 sing N N 150 G N1 C2 sing N N 151 G N1 H1 sing N N 152 G C2 N2 sing N N 153 G C2 N3 doub N N 154 G N2 H21 sing N N 155 G N2 H22 sing N N 156 G N3 C4 sing N N 157 HOH O H1 sing N N 158 HOH O H2 sing N N 159 SVN CAB CAC doub Y N 160 SVN CAB NAE sing Y N 161 SVN CAC NAF sing Y N 162 SVN NAE CAI doub Y N 163 SVN NAF CAJ doub Y N 164 SVN CAI CAJ sing Y N 165 SVN CAI SAG sing Y N 166 SVN CAJ CAH sing Y N 167 SVN CAH NAA sing N N 168 SVN CAH CAD doub Y N 169 SVN SAG CAD sing Y N 170 SVN CAD H1 sing N N 171 SVN CAB H2 sing N N 172 SVN CAC H3 sing N N 173 SVN NAA H4 sing N N 174 SVN NAA H5 sing N N 175 U OP3 P sing N N 176 U OP3 HOP3 sing N N 177 U P OP1 doub N N 178 U P OP2 sing N N 179 U P "O5'" sing N N 180 U OP2 HOP2 sing N N 181 U "O5'" "C5'" sing N N 182 U "C5'" "C4'" sing N N 183 U "C5'" "H5'" sing N N 184 U "C5'" "H5''" sing N N 185 U "C4'" "O4'" sing N N 186 U "C4'" "C3'" sing N N 187 U "C4'" "H4'" sing N N 188 U "O4'" "C1'" sing N N 189 U "C3'" "O3'" sing N N 190 U "C3'" "C2'" sing N N 191 U "C3'" "H3'" sing N N 192 U "O3'" "HO3'" sing N N 193 U "C2'" "O2'" sing N N 194 U "C2'" "C1'" sing N N 195 U "C2'" "H2'" sing N N 196 U "O2'" "HO2'" sing N N 197 U "C1'" N1 sing N N 198 U "C1'" "H1'" sing N N 199 U N1 C2 sing N N 200 U N1 C6 sing N N 201 U C2 O2 doub N N 202 U C2 N3 sing N N 203 U N3 C4 sing N N 204 U N3 H3 sing N N 205 U C4 O4 doub N N 206 U C4 C5 sing N N 207 U C5 C6 doub N N 208 U C5 H5 sing N N 209 U C6 H6 sing N N 210 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4NYC 'double helix' 4NYC 'a-form double helix' 4NYC 'hairpin loop' 4NYC 'bulge loop' 4NYC 'mismatched base pair' 4NYC 'internal loop' 4NYC 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 82 1_555 0.302 0.000 0.159 0.591 -20.081 2.724 1 A_G9:C90_A A 9 ? A 90 ? 19 1 1 A C 2 1_555 A G 81 1_555 -0.333 -0.214 0.115 -1.971 -18.519 0.163 2 A_C10:G89_A A 10 ? A 89 ? 19 1 1 A G 3 1_555 A C 80 1_555 -0.249 -0.024 0.220 -1.378 -21.323 5.838 3 A_G11:C88_A A 11 ? A 88 ? 19 1 1 A A 4 1_555 A U 79 1_555 0.525 0.020 -0.240 -4.437 -18.971 5.155 4 A_A12:U87_A A 12 ? A 87 ? 20 1 1 A C 5 1_555 A G 78 1_555 0.246 0.076 -0.385 7.709 -26.150 2.297 5 A_C13:G86_A A 13 ? A 86 ? 19 1 1 A U 6 1_555 A A 77 1_555 -0.813 -0.060 -0.160 -1.957 -20.684 8.041 6 A_U14:A85_A A 14 ? A 85 ? 20 1 1 A C 7 1_555 A G 43 1_555 -0.979 0.238 0.168 8.115 -10.119 4.194 7 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A G 8 1_555 A C 42 1_555 0.312 0.089 0.030 -4.777 -19.537 4.123 8 A_G16:C50_A A 16 ? A 50 ? 19 1 1 A G 9 1_555 A C 41 1_555 -0.444 -0.057 0.692 -16.030 -15.542 3.403 9 A_G17:C49_A A 17 ? A 49 ? 19 1 1 A G 10 1_555 A C 40 1_555 -0.824 -0.403 0.288 -14.745 -21.338 -6.763 10 A_G18:C48_A A 18 ? A 48 ? 19 1 1 A G 11 1_555 A A 39 1_555 -0.033 1.465 -0.099 0.674 -10.128 -23.432 11 A_G19:A47_A A 19 ? A 47 ? 8 1 1 A U 12 1_555 A A 37 1_555 0.975 -0.003 -0.851 23.331 6.309 8.359 12 A_U20:A45_A A 20 ? A 45 ? ? 1 1 A A 27 1_555 A C 16 1_555 -4.065 -1.149 -0.262 -6.210 -2.292 -12.018 13 A_A35:C24_A A 35 ? A 24 ? ? 1 1 A G 28 1_555 A C 15 1_555 -1.148 -0.201 -0.101 2.050 -9.540 11.752 14 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A G 29 1_555 A C 14 1_555 -0.009 0.056 -0.040 -3.364 -11.956 8.673 15 A_G37:C22_A A 37 ? A 22 ? 19 1 1 A C 30 1_555 A G 13 1_555 0.856 0.143 0.509 -8.128 6.803 -1.847 16 A_C38:G21_A A 38 ? A 21 ? 19 1 1 A U 31 1_555 A A 35 1_555 4.498 -2.239 0.719 9.121 8.686 -98.361 17 A_U39:A43_A A 39 ? A 43 ? 24 4 1 A A 48 1_555 A G 75 1_555 -6.905 -4.247 0.443 26.531 -32.633 -7.646 18 A_A56:G83_A A 56 ? A 83 ? ? 10 1 A C 49 1_555 A G 74 1_555 0.505 0.119 -0.655 8.093 -17.574 -0.229 19 A_C57:G82_A A 57 ? A 82 ? 19 1 1 A C 50 1_555 A G 73 1_555 0.795 -0.351 0.812 -12.901 -11.309 -4.028 20 A_C58:G81_A A 58 ? A 81 ? 19 1 1 A U 51 1_555 A A 72 1_555 0.557 -0.074 0.641 -11.980 -24.003 8.018 21 A_U59:A80_A A 59 ? A 80 ? 20 1 1 A G 52 1_555 A G 70 1_555 1.486 3.049 -0.334 -22.146 7.121 -100.405 22 A_G60:G78_A A 60 ? A 78 ? 6 3 1 A A 53 1_555 A C 69 1_555 -2.019 2.857 -0.152 1.463 -9.095 105.723 23 A_A61:C77_A A 61 ? A 77 ? ? ? 1 A C 55 1_555 A G 68 1_555 0.736 -0.150 0.094 8.692 -29.063 0.687 24 A_C63:G76_A A 63 ? A 76 ? 19 1 1 A U 56 1_555 A A 67 1_555 -0.405 -0.068 0.033 -1.499 -11.674 -5.891 25 A_U64:A75_A A 64 ? A 75 ? 20 1 1 A G 57 1_555 A C 66 1_555 -0.394 0.028 -0.079 0.264 -4.800 -5.598 26 A_G65:C74_A A 65 ? A 74 ? 19 1 1 A G 58 1_555 A C 65 1_555 0.929 0.244 -0.454 -7.082 -10.592 -0.006 27 A_G66:C73_A A 66 ? A 73 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 82 1_555 A C 2 1_555 A G 81 1_555 0.220 -1.254 3.212 -0.127 4.627 33.529 -2.868 -0.397 3.016 7.974 0.219 33.838 1 AA_G9C10:G89C90_AA A 9 ? A 90 ? A 10 ? A 89 ? 1 A C 2 1_555 A G 81 1_555 A G 3 1_555 A C 80 1_555 0.288 -1.577 3.296 0.881 6.737 31.692 -3.967 -0.367 2.915 12.161 -1.589 32.394 2 AA_C10G11:C88G89_AA A 10 ? A 89 ? A 11 ? A 88 ? 1 A G 3 1_555 A C 80 1_555 A A 4 1_555 A U 79 1_555 -0.335 -1.176 3.423 0.633 4.207 33.654 -2.708 0.678 3.250 7.230 -1.088 33.914 3 AA_G11A12:U87C88_AA A 11 ? A 88 ? A 12 ? A 87 ? 1 A A 4 1_555 A U 79 1_555 A C 5 1_555 A G 78 1_555 -0.306 -1.289 2.842 1.247 6.374 31.560 -3.267 0.736 2.526 11.566 -2.263 32.205 4 AA_A12C13:G86U87_AA A 12 ? A 87 ? A 13 ? A 86 ? 1 A C 5 1_555 A G 78 1_555 A U 6 1_555 A A 77 1_555 0.448 -0.645 3.347 -2.096 12.678 27.790 -3.688 -1.257 2.757 24.786 4.098 30.564 5 AA_C13U14:A85G86_AA A 13 ? A 86 ? A 14 ? A 85 ? 1 A U 6 1_555 A A 77 1_555 A C 7 1_555 A G 43 1_555 1.264 -0.507 3.129 -3.342 1.550 40.875 -0.881 -2.144 3.001 2.214 4.774 41.033 6 AA_U14C15:G51A85_AA A 14 ? A 85 ? A 15 ? A 51 ? 1 A C 7 1_555 A G 43 1_555 A G 8 1_555 A C 42 1_555 0.920 -1.728 3.829 -1.582 4.537 35.482 -3.550 -1.754 3.545 7.402 2.580 35.795 7 AA_C15G16:C50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A G 8 1_555 A C 42 1_555 A G 9 1_555 A C 41 1_555 -0.541 -1.977 3.265 -3.867 5.604 33.829 -4.169 0.337 2.951 9.511 6.563 34.487 8 AA_G16G17:C49C50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 9 1_555 A C 41 1_555 A G 10 1_555 A C 40 1_555 -0.108 -1.801 3.083 4.814 8.555 28.196 -5.036 1.074 2.396 16.925 -9.524 29.823 9 AA_G17G18:C48C49_AA A 17 ? A 49 ? A 18 ? A 48 ? 1 A G 10 1_555 A C 40 1_555 A G 11 1_555 A A 39 1_555 -1.309 -0.912 2.887 5.576 -2.219 38.661 -1.132 2.533 2.726 -3.327 -8.361 39.107 10 AA_G18G19:A47C48_AA A 18 ? A 48 ? A 19 ? A 47 ? 1 A G 11 1_555 A A 39 1_555 A U 12 1_555 A A 37 1_555 0.280 0.219 2.955 7.024 12.663 7.580 -7.817 3.779 1.664 54.668 -30.323 16.335 11 AA_G19U20:A45A47_AA A 19 ? A 47 ? A 20 ? A 45 ? 1 A A 27 1_555 A C 16 1_555 A G 28 1_555 A C 15 1_555 1.621 -1.171 3.135 -6.342 10.413 40.568 -2.563 -2.820 2.504 14.624 8.906 42.286 12 AA_A35G36:C23C24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 28 1_555 A C 15 1_555 A G 29 1_555 A C 14 1_555 -0.603 -1.323 3.294 -4.814 8.453 41.810 -2.635 0.355 3.031 11.656 6.637 42.878 13 AA_G36G37:C22C23_AA A 36 ? A 23 ? A 37 ? A 22 ? 1 A G 29 1_555 A C 14 1_555 A C 30 1_555 A G 13 1_555 -0.298 -1.765 3.560 -2.244 3.152 39.141 -3.024 0.157 3.425 4.691 3.340 39.325 14 AA_G37C38:G21C22_AA A 37 ? A 22 ? A 38 ? A 21 ? 1 A C 30 1_555 A G 13 1_555 A U 31 1_555 A A 35 1_555 -3.187 -1.434 2.925 10.312 3.747 68.305 -1.378 3.121 2.410 3.315 -9.124 69.074 15 AA_C38U39:A43G21_AA A 38 ? A 21 ? A 39 ? A 43 ? 1 A A 48 1_555 A G 75 1_555 A C 49 1_555 A G 74 1_555 0.645 -0.679 4.343 2.351 6.503 66.684 -0.951 -0.463 4.287 5.899 -2.133 67.000 16 AA_A56C57:G82G83_AA A 56 ? A 83 ? A 57 ? A 82 ? 1 A C 49 1_555 A G 74 1_555 A C 50 1_555 A G 73 1_555 -0.871 -1.923 3.981 -13.365 5.175 30.501 -4.365 -1.181 3.669 9.224 23.823 33.628 17 AA_C57C58:G81G82_AA A 57 ? A 82 ? A 58 ? A 81 ? 1 A C 50 1_555 A G 73 1_555 A U 51 1_555 A A 72 1_555 0.687 -1.225 2.861 4.907 13.245 40.160 -2.810 -0.534 2.422 18.605 -6.893 42.474 18 AA_C58U59:A80G81_AA A 58 ? A 81 ? A 59 ? A 80 ? 1 A U 51 1_555 A A 72 1_555 A G 52 1_555 A G 70 1_555 1.638 -1.669 2.887 18.072 5.651 90.522 -1.259 -0.821 3.021 3.943 -12.610 92.058 19 AA_U59G60:G78A80_AA A 59 ? A 80 ? A 60 ? A 78 ? 1 A G 52 1_555 A G 70 1_555 A A 53 1_555 A C 69 1_555 2.847 1.494 -0.625 18.716 -169.034 -26.881 -0.605 1.444 0.993 88.303 9.777 -170.340 20 AA_G60A61:C77G78_AA A 60 ? A 78 ? A 61 ? A 77 ? 1 A A 53 1_555 A C 69 1_555 A C 55 1_555 A G 68 1_555 -3.000 -1.424 -1.752 91.784 -143.268 74.949 -1.369 1.084 -1.400 -73.255 -46.930 172.184 21 AA_A61C63:G76C77_AA A 61 ? A 77 ? A 63 ? A 76 ? 1 A C 55 1_555 A G 68 1_555 A U 56 1_555 A A 67 1_555 -0.860 -1.726 3.566 -5.666 4.112 26.018 -4.842 0.281 3.366 8.929 12.303 26.928 22 AA_C63U64:A75G76_AA A 63 ? A 76 ? A 64 ? A 75 ? 1 A U 56 1_555 A A 67 1_555 A G 57 1_555 A C 66 1_555 0.285 -1.964 3.172 1.579 6.042 30.476 -4.722 -0.255 2.752 11.345 -2.965 31.094 23 AA_U64G65:C74A75_AA A 64 ? A 75 ? A 65 ? A 74 ? 1 A G 57 1_555 A C 66 1_555 A G 58 1_555 A C 65 1_555 1.032 -1.958 3.416 8.036 7.435 41.008 -3.484 -0.589 3.168 10.392 -11.231 42.383 24 AA_G65G66:C73C74_AA A 65 ? A 74 ? A 66 ? A 73 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'thieno[2,3-b]pyrazin-7-amine' SVN 3 'MAGNESIUM ION' MG 4 'MANGANESE (II) ION' MN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HOJ _pdbx_initial_refinement_model.details 'PDB ENTRY 2HOJ' #