HEADER SIGNALING PROTEIN 10-DEC-13 4NYI TITLE APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT ACTIVATE SOS- TITLE 2 MEDIATED NUCLEOTIDE EXCHANGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: Q; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 5 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GTPASE HRAS; COMPND 10 CHAIN: R; COMPND 11 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS, COMPND 12 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 16 CHAIN: S; COMPND 17 SYNONYM: SOS-1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HRAS, HRAS1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SOS1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RAS SOS COMPLEX, SIGNAL TRANSDUCTION, RAF, PI3K, POLY-PETIDE, KEYWDS 2 CYTOSOL, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.C.BURNS,Q.SUN,J.PHAN,S.W.FESIK REVDAT 3 28-FEB-24 4NYI 1 REMARK SEQADV LINK REVDAT 2 19-MAR-14 4NYI 1 JRNL REVDAT 1 12-MAR-14 4NYI 0 JRNL AUTH M.C.BURNS,Q.SUN,R.N.DANIELS,D.CAMPER,J.P.KENNEDY,J.PHAN, JRNL AUTH 2 E.T.OLEJNICZAK,T.LEE,A.G.WATERSON,O.W.ROSSANESE,S.W.FESIK JRNL TITL APPROACH FOR TARGETING RAS WITH SMALL MOLECULES THAT JRNL TITL 2 ACTIVATE SOS-MEDIATED NUCLEOTIDE EXCHANGE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 3401 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24550516 JRNL DOI 10.1073/PNAS.1315798111 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9478 - 6.5734 0.99 2887 153 0.1601 0.1948 REMARK 3 2 6.5734 - 5.2226 1.00 2786 145 0.1789 0.2039 REMARK 3 3 5.2226 - 4.5639 1.00 2772 141 0.1424 0.1792 REMARK 3 4 4.5639 - 4.1473 1.00 2716 149 0.1278 0.1579 REMARK 3 5 4.1473 - 3.8504 1.00 2735 147 0.1414 0.1917 REMARK 3 6 3.8504 - 3.6236 1.00 2733 144 0.1587 0.2084 REMARK 3 7 3.6236 - 3.4423 1.00 2703 142 0.1754 0.2342 REMARK 3 8 3.4423 - 3.2926 1.00 2713 141 0.1893 0.2767 REMARK 3 9 3.2926 - 3.1659 1.00 2700 141 0.1980 0.2421 REMARK 3 10 3.1659 - 3.0567 1.00 2692 139 0.2100 0.2500 REMARK 3 11 3.0567 - 2.9612 1.00 2688 138 0.2299 0.2919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6799 REMARK 3 ANGLE : 1.135 9204 REMARK 3 CHIRALITY : 0.075 1006 REMARK 3 PLANARITY : 0.005 1195 REMARK 3 DIHEDRAL : 17.947 2612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4NYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.961 REMARK 200 RESOLUTION RANGE LOW (A) : 35.945 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 91.64250 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 88.93000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 91.64250 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 88.93000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 91.64250 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 88.93000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 91.64250 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 88.93000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.64250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 88.93000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 91.64250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 88.93000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 91.64250 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 88.93000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 91.64250 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 91.64250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN S 593 REMARK 465 PRO S 594 REMARK 465 LYS S 595 REMARK 465 ARG S 744 REMARK 465 ASP S 745 REMARK 465 ASN S 746 REMARK 465 GLY S 747 REMARK 465 PRO S 748 REMARK 465 GLY S 749 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER R 89 O HOH R 205 2.11 REMARK 500 NH1 ARG R 73 O ASN S 879 2.17 REMARK 500 O ASN R 26 N PHE R 28 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET Q 1 131.22 44.74 REMARK 500 ALA Q 11 160.46 -48.22 REMARK 500 GLU Q 37 102.27 -167.55 REMARK 500 LYS Q 117 30.14 70.51 REMARK 500 ARG Q 149 -2.94 81.13 REMARK 500 VAL R 14 -105.16 -107.27 REMARK 500 LYS R 16 -61.57 -20.95 REMARK 500 ASN R 26 78.41 -152.76 REMARK 500 HIS R 27 38.32 -53.27 REMARK 500 GLU R 31 98.20 64.79 REMARK 500 THR R 58 30.75 -93.79 REMARK 500 PRO R 110 108.91 -57.19 REMARK 500 ARG R 149 -5.14 69.95 REMARK 500 ASP S 620 79.09 -151.44 REMARK 500 TYR S 681 -59.30 -124.71 REMARK 500 HIS S 700 39.16 -141.94 REMARK 500 HIS S 764 -120.61 -112.89 REMARK 500 ASN S1044 83.20 -174.64 REMARK 500 PRO S1045 -140.83 -76.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG Q 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER Q 17 OG REMARK 620 2 THR Q 35 OG1 82.9 REMARK 620 3 GNP Q 202 O1G 168.6 86.1 REMARK 620 4 GNP Q 202 O1B 96.4 175.0 94.2 REMARK 620 5 HOH Q 301 O 82.7 87.8 93.6 87.2 REMARK 620 6 HOH Q 303 O 93.8 102.2 91.8 82.7 168.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG Q 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP Q 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PX S 1101 DBREF 4NYI Q 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 4NYI R 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 4NYI S 566 1046 UNP Q07889 SOS1_HUMAN 566 1046 SEQADV 4NYI GLY Q 0 UNP P01112 EXPRESSION TAG SEQADV 4NYI ALA Q 64 UNP P01112 TYR 64 ENGINEERED MUTATION SEQADV 4NYI GLY R 0 UNP P01112 EXPRESSION TAG SEQRES 1 Q 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 Q 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 Q 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 Q 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 Q 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU ALA SEQRES 6 Q 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 Q 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 Q 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 Q 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 Q 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 Q 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 Q 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 Q 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 R 167 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY SEQRES 2 R 167 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN SEQRES 3 R 167 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SEQRES 4 R 167 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS SEQRES 5 R 167 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SEQRES 6 R 167 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY SEQRES 7 R 167 PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE SEQRES 8 R 167 GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL SEQRES 9 R 167 LYS ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN SEQRES 10 R 167 LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN SEQRES 11 R 167 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE SEQRES 12 R 167 GLU THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA SEQRES 13 R 167 PHE TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 S 481 GLN MET ARG LEU PRO SER ALA ASP VAL TYR ARG PHE ALA SEQRES 2 S 481 GLU PRO ASP SER GLU GLU ASN ILE ILE PHE GLU GLU ASN SEQRES 3 S 481 MET GLN PRO LYS ALA GLY ILE PRO ILE ILE LYS ALA GLY SEQRES 4 S 481 THR VAL ILE LYS LEU ILE GLU ARG LEU THR TYR HIS MET SEQRES 5 S 481 TYR ALA ASP PRO ASN PHE VAL ARG THR PHE LEU THR THR SEQRES 6 S 481 TYR ARG SER PHE CYS LYS PRO GLN GLU LEU LEU SER LEU SEQRES 7 S 481 ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO GLU PRO THR SEQRES 8 S 481 GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY ASP GLN PRO SEQRES 9 S 481 LEU SER ALA GLU LEU LYS ARG PHE ARG LYS GLU TYR ILE SEQRES 10 S 481 GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL CYS ARG HIS SEQRES 11 S 481 TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU ARG ASP ALA SEQRES 12 S 481 TYR LEU LEU GLN ARG MET GLU GLU PHE ILE GLY THR VAL SEQRES 13 S 481 ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SER ILE THR SEQRES 14 S 481 LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG ASP ASN GLY SEQRES 15 S 481 PRO GLY HIS ASN ILE THR PHE GLN SER SER PRO PRO THR SEQRES 16 S 481 VAL GLU TRP HIS ILE SER ARG PRO GLY HIS ILE GLU THR SEQRES 17 S 481 PHE ASP LEU LEU THR LEU HIS PRO ILE GLU ILE ALA ARG SEQRES 18 S 481 GLN LEU THR LEU LEU GLU SER ASP LEU TYR ARG ALA VAL SEQRES 19 S 481 GLN PRO SER GLU LEU VAL GLY SER VAL TRP THR LYS GLU SEQRES 20 S 481 ASP LYS GLU ILE ASN SER PRO ASN LEU LEU LYS MET ILE SEQRES 21 S 481 ARG HIS THR THR ASN LEU THR LEU TRP PHE GLU LYS CYS SEQRES 22 S 481 ILE VAL GLU THR GLU ASN LEU GLU GLU ARG VAL ALA VAL SEQRES 23 S 481 VAL SER ARG ILE ILE GLU ILE LEU GLN VAL PHE GLN GLU SEQRES 24 S 481 LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL VAL SER ALA SEQRES 25 S 481 MET ASN SER SER PRO VAL TYR ARG LEU ASP HIS THR PHE SEQRES 26 S 481 GLU GLN ILE PRO SER ARG GLN LYS LYS ILE LEU GLU GLU SEQRES 27 S 481 ALA HIS GLU LEU SER GLU ASP HIS TYR LYS LYS TYR LEU SEQRES 28 S 481 ALA LYS LEU ARG SER ILE ASN PRO PRO CYS VAL PRO PHE SEQRES 29 S 481 PHE GLY ILE TYR LEU THR ASN ILE LEU LYS THR GLU GLU SEQRES 30 S 481 GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY LYS GLU LEU SEQRES 31 S 481 ILE ASN PHE SER LYS ARG ARG LYS VAL ALA GLU ILE THR SEQRES 32 S 481 GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO TYR CYS LEU SEQRES 33 S 481 ARG VAL GLU SER ASP ILE LYS ARG PHE PHE GLU ASN LEU SEQRES 34 S 481 ASN PRO MET GLY ASN SER MET GLU LYS GLU PHE THR ASP SEQRES 35 S 481 TYR LEU PHE ASN LYS SER LEU GLU ILE GLU PRO ARG ASN SEQRES 36 S 481 PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS TYR SER TYR SEQRES 37 S 481 PRO LEU LYS SER PRO GLY VAL ARG PRO SER ASN PRO ARG HET MG Q 201 1 HET GNP Q 202 32 HET 2PX S1101 32 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM 2PX N-{1-[(5-METHYL-1H-INDOL-3-YL)METHYL]PIPERIDIN-4-YL}-L- HETNAM 2 2PX TRYPTOPHANAMIDE FORMUL 4 MG MG 2+ FORMUL 5 GNP C10 H17 N6 O13 P3 FORMUL 6 2PX C26 H31 N5 O FORMUL 7 HOH *144(H2 O) HELIX 1 1 GLY Q 15 ASN Q 26 1 12 HELIX 2 2 GLN Q 61 MET Q 67 5 7 HELIX 3 3 ARG Q 68 ARG Q 73 1 6 HELIX 4 4 ASN Q 86 ASP Q 92 1 7 HELIX 5 5 ASP Q 92 ASP Q 105 1 14 HELIX 6 6 GLU Q 126 GLY Q 138 1 13 HELIX 7 7 GLY Q 151 HIS Q 166 1 16 HELIX 8 8 LYS R 16 GLN R 25 1 10 HELIX 9 9 TYR R 64 ALA R 66 5 3 HELIX 10 10 MET R 67 THR R 74 1 8 HELIX 11 11 ASN R 86 ASP R 92 1 7 HELIX 12 12 ASP R 92 ASP R 105 1 14 HELIX 13 13 GLU R 126 GLY R 138 1 13 HELIX 14 14 SER R 145 ARG R 149 5 5 HELIX 15 15 GLY R 151 GLN R 165 1 15 HELIX 16 16 TYR S 575 GLU S 579 5 5 HELIX 17 17 THR S 605 THR S 614 1 10 HELIX 18 18 ASP S 620 TYR S 631 1 12 HELIX 19 19 ARG S 632 PHE S 634 5 3 HELIX 20 20 LYS S 636 GLU S 649 1 14 HELIX 21 21 THR S 656 GLU S 664 1 9 HELIX 22 22 SER S 671 TYR S 681 1 11 HELIX 23 23 TYR S 681 HIS S 700 1 20 HELIX 24 24 PHE S 701 ARG S 706 1 6 HELIX 25 25 ASP S 707 THR S 720 1 14 HELIX 26 26 MET S 726 ILE S 742 1 17 HELIX 27 27 HIS S 780 ALA S 798 1 19 HELIX 28 28 VAL S 799 VAL S 808 5 10 HELIX 29 29 ASP S 813 SER S 818 1 6 HELIX 30 30 SER S 818 GLU S 841 1 24 HELIX 31 31 ASN S 844 LEU S 865 1 22 HELIX 32 32 ASN S 867 SER S 880 1 14 HELIX 33 33 SER S 880 ARG S 885 1 6 HELIX 34 34 LEU S 886 GLU S 891 1 6 HELIX 35 35 PRO S 894 LEU S 907 1 14 HELIX 36 36 SER S 908 ARG S 920 1 13 HELIX 37 37 PHE S 929 ASN S 944 1 16 HELIX 38 38 PHE S 958 GLN S 975 1 18 HELIX 39 39 GLU S 984 ASN S 993 1 10 HELIX 40 40 MET S 1001 GLU S 1017 1 17 SHEET 1 A 6 GLU Q 37 ILE Q 46 0 SHEET 2 A 6 GLU Q 49 THR Q 58 -1 O ILE Q 55 N TYR Q 40 SHEET 3 A 6 THR Q 2 VAL Q 9 1 N TYR Q 4 O ASP Q 54 SHEET 4 A 6 GLY Q 77 ALA Q 83 1 O LEU Q 79 N VAL Q 7 SHEET 5 A 6 MET Q 111 ASN Q 116 1 O ASN Q 116 N PHE Q 82 SHEET 6 A 6 TYR Q 141 GLU Q 143 1 O ILE Q 142 N LEU Q 113 SHEET 1 B 6 ARG R 41 ILE R 46 0 SHEET 2 B 6 GLU R 49 ASP R 57 -1 O LEU R 53 N LYS R 42 SHEET 3 B 6 THR R 2 GLY R 10 1 N TYR R 4 O LEU R 52 SHEET 4 B 6 GLY R 77 ALA R 83 1 O VAL R 81 N VAL R 9 SHEET 5 B 6 MET R 111 ASN R 116 1 O VAL R 112 N CYS R 80 SHEET 6 B 6 TYR R 141 THR R 144 1 O ILE R 142 N LEU R 113 SHEET 1 C 4 ILE S 586 PHE S 588 0 SHEET 2 C 4 ILE S 601 GLY S 604 -1 O LYS S 602 N ILE S 587 SHEET 3 C 4 LYS S 953 ASN S 957 -1 O ILE S 956 N GLY S 604 SHEET 4 C 4 VAL S 947 ARG S 950 -1 N LEU S 948 O LEU S 955 LINK OG SER Q 17 MG MG Q 201 1555 1555 2.04 LINK OG1 THR Q 35 MG MG Q 201 1555 1555 2.09 LINK MG MG Q 201 O1G GNP Q 202 1555 1555 2.01 LINK MG MG Q 201 O1B GNP Q 202 1555 1555 2.04 LINK MG MG Q 201 O HOH Q 301 1555 1555 2.01 LINK MG MG Q 201 O HOH Q 303 1555 1555 2.08 CISPEP 1 ALA S 596 GLY S 597 0 -1.49 CISPEP 2 PRO S 924 PRO S 925 0 3.56 CISPEP 3 ASN S 1020 PRO S 1021 0 9.04 SITE 1 AC1 5 SER Q 17 THR Q 35 GNP Q 202 HOH Q 301 SITE 2 AC1 5 HOH Q 303 SITE 1 AC2 25 GLY Q 12 GLY Q 13 VAL Q 14 GLY Q 15 SITE 2 AC2 25 LYS Q 16 SER Q 17 ALA Q 18 PHE Q 28 SITE 3 AC2 25 VAL Q 29 ASP Q 30 GLU Q 31 TYR Q 32 SITE 4 AC2 25 PRO Q 34 THR Q 35 GLY Q 60 GLN Q 61 SITE 5 AC2 25 ASN Q 116 LYS Q 117 ASP Q 119 LEU Q 120 SITE 6 AC2 25 SER Q 145 ALA Q 146 MG Q 201 HOH Q 301 SITE 7 AC2 25 HOH Q 303 SITE 1 AC3 5 MET S 878 TYR S 884 PHE S 890 LYS S 898 SITE 2 AC3 5 GLU S 902 CRYST1 183.285 183.285 177.860 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005622 0.00000