data_4NYS # _entry.id 4NYS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4NYS RCSB RCSB083825 WWPDB D_1000083825 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2015-12-02 _pdbx_database_PDB_obs_spr.pdb_id 5EPQ _pdbx_database_PDB_obs_spr.replace_pdb_id 4NYS _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4NYQ . unspecified PDB 4NYR . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4NYS _pdbx_database_status.recvd_initial_deposition_date 2013-12-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Coussens, N.P.' 1 'Gallat, F.-X.' 2 'Ramaswamy, S.' 3 'Yagi, K.' 4 'Tobe, S.S.' 5 'Stay, B.' 6 'Chavas, L.M.G.' 7 # _citation.id primary _citation.title ;Crystal structure of glycosylated lipid-carrying proteins: an unusual storage form of complete nutrient for embryos of a viviparous cockroach ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Coussens, N.P.' 1 primary 'Gallat, F.-X.' 2 primary 'Ramaswamy, S.' 3 primary 'Yagi, K.' 4 primary 'Tobe, S.S.' 5 primary 'Stay, B.' 6 primary 'Chavas, L.M.G.' 7 # _cell.entry_id 4NYS _cell.length_a 32.080 _cell.length_b 33.260 _cell.length_c 39.970 _cell.angle_alpha 99.42 _cell.angle_beta 100.21 _cell.angle_gamma 103.88 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4NYS _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Milk protein' 18749.201 1 ? ? ? ? 2 non-polymer man N-ACETYL-D-GLUCOSAMINE 221.208 5 ? ? ? ? 3 non-polymer man BETA-D-MANNOSE 180.156 1 ? ? ? ? 4 non-polymer syn 'OLEIC ACID' 282.461 1 ? ? ? ? 5 non-polymer syn 'LINOLEIC ACID' 280.445 1 ? ? ? ? 6 water nat water 18.015 190 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Lili-Mip # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IAAILVANAKEPCPPENLQLTPRALVGKWYLRTTSPDIFKQVSNITEFYSAHGNDYYGTVTDYSPEYGLEAHRVNLTVSG RTLKFYMNDTHEYDSKYEILAVDKDYFIFYGHPPAAPSGLALIHYRQSCPKEDVIKRVKKALKNVCLDYKYFGNDTSVPC HYVE ; _entity_poly.pdbx_seq_one_letter_code_can ;IAAILVANAKEPCPPENLQLTPRALVGKWYLRTTSPDIFKQVSNITEFYSAHGNDYYGTVTDYSPEYGLEAHRVNLTVSG RTLKFYMNDTHEYDSKYEILAVDKDYFIFYGHPPAAPSGLALIHYRQSCPKEDVIKRVKKALKNVCLDYKYFGNDTSVPC HYVE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ALA n 1 3 ALA n 1 4 ILE n 1 5 LEU n 1 6 VAL n 1 7 ALA n 1 8 ASN n 1 9 ALA n 1 10 LYS n 1 11 GLU n 1 12 PRO n 1 13 CYS n 1 14 PRO n 1 15 PRO n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 GLN n 1 20 LEU n 1 21 THR n 1 22 PRO n 1 23 ARG n 1 24 ALA n 1 25 LEU n 1 26 VAL n 1 27 GLY n 1 28 LYS n 1 29 TRP n 1 30 TYR n 1 31 LEU n 1 32 ARG n 1 33 THR n 1 34 THR n 1 35 SER n 1 36 PRO n 1 37 ASP n 1 38 ILE n 1 39 PHE n 1 40 LYS n 1 41 GLN n 1 42 VAL n 1 43 SER n 1 44 ASN n 1 45 ILE n 1 46 THR n 1 47 GLU n 1 48 PHE n 1 49 TYR n 1 50 SER n 1 51 ALA n 1 52 HIS n 1 53 GLY n 1 54 ASN n 1 55 ASP n 1 56 TYR n 1 57 TYR n 1 58 GLY n 1 59 THR n 1 60 VAL n 1 61 THR n 1 62 ASP n 1 63 TYR n 1 64 SER n 1 65 PRO n 1 66 GLU n 1 67 TYR n 1 68 GLY n 1 69 LEU n 1 70 GLU n 1 71 ALA n 1 72 HIS n 1 73 ARG n 1 74 VAL n 1 75 ASN n 1 76 LEU n 1 77 THR n 1 78 VAL n 1 79 SER n 1 80 GLY n 1 81 ARG n 1 82 THR n 1 83 LEU n 1 84 LYS n 1 85 PHE n 1 86 TYR n 1 87 MET n 1 88 ASN n 1 89 ASP n 1 90 THR n 1 91 HIS n 1 92 GLU n 1 93 TYR n 1 94 ASP n 1 95 SER n 1 96 LYS n 1 97 TYR n 1 98 GLU n 1 99 ILE n 1 100 LEU n 1 101 ALA n 1 102 VAL n 1 103 ASP n 1 104 LYS n 1 105 ASP n 1 106 TYR n 1 107 PHE n 1 108 ILE n 1 109 PHE n 1 110 TYR n 1 111 GLY n 1 112 HIS n 1 113 PRO n 1 114 PRO n 1 115 ALA n 1 116 ALA n 1 117 PRO n 1 118 SER n 1 119 GLY n 1 120 LEU n 1 121 ALA n 1 122 LEU n 1 123 ILE n 1 124 HIS n 1 125 TYR n 1 126 ARG n 1 127 GLN n 1 128 SER n 1 129 CYS n 1 130 PRO n 1 131 LYS n 1 132 GLU n 1 133 ASP n 1 134 VAL n 1 135 ILE n 1 136 LYS n 1 137 ARG n 1 138 VAL n 1 139 LYS n 1 140 LYS n 1 141 ALA n 1 142 LEU n 1 143 LYS n 1 144 ASN n 1 145 VAL n 1 146 CYS n 1 147 LEU n 1 148 ASP n 1 149 TYR n 1 150 LYS n 1 151 TYR n 1 152 PHE n 1 153 GLY n 1 154 ASN n 1 155 ASP n 1 156 THR n 1 157 SER n 1 158 VAL n 1 159 PRO n 1 160 CYS n 1 161 HIS n 1 162 TYR n 1 163 VAL n 1 164 GLU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Pacific beetle cockroach' _entity_src_nat.pdbx_organism_scientific 'Diploptera punctata' _entity_src_nat.pdbx_ncbi_taxonomy_id 6984 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6SVB6_DIPPU _struct_ref.pdbx_db_accession Q6SVB6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;IAAILVANAKEPCPPENLQLTPRALVGKWYLRTTSPDIFKQVSNITEFYSAHGNDYYGTVTDYSPEYGLEAHRVNLTVSG RTLKFYMNDTHEYDSKYEILAVDKDYFIFYGHPPAAPSGLALIHYRQSCPKEDVIKRVKKALKNVCLDYKYFGNDTSVPC HYVE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4NYS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6SVB6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 164 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -8 _struct_ref_seq.pdbx_auth_seq_align_end 155 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA D-saccharide . BETA-D-MANNOSE ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EIC non-polymer . 'LINOLEIC ACID' '9,12-LINOLEIC ACID' 'C18 H32 O2' 280.445 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG D-saccharide . N-ACETYL-D-GLUCOSAMINE ? 'C8 H15 N O6' 221.208 OLA non-polymer . 'OLEIC ACID' ? 'C18 H34 O2' 282.461 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4NYS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 42.04 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details '10%-20% PEG 3350, 10% glycerol, 50 mM Bis-Tris, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 70 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU RAXIS HTC' _diffrn_detector.pdbx_collection_date 2004-11-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54178 # _reflns.entry_id 4NYS _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 38.4 _reflns.d_resolution_high 1.85 _reflns.number_obs 12274 _reflns.number_all 13133 _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.852 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 83.86 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4NYS _refine.ls_number_reflns_obs 11676 _refine.ls_number_reflns_all 12274 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.46 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 93.72 _refine.ls_R_factor_obs 0.14644 _refine.ls_R_factor_all 0.14644 _refine.ls_R_factor_R_work 0.14410 _refine.ls_R_factor_R_free 0.19038 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 601 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.B_iso_mean 19.479 _refine.aniso_B[1][1] -0.40 _refine.aniso_B[2][2] -0.09 _refine.aniso_B[3][3] 0.28 _refine.aniso_B[1][2] 0.16 _refine.aniso_B[1][3] -0.06 _refine.aniso_B[2][3] 0.45 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4NYR _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.153 _refine.pdbx_overall_ESU_R_Free 0.136 _refine.overall_SU_ML 0.080 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.616 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1248 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 121 _refine_hist.number_atoms_solvent 190 _refine_hist.number_atoms_total 1559 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 27.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.014 0.019 ? 1469 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 1353 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.660 2.044 ? 2002 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.910 3.003 ? 3116 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.656 5.000 ? 164 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 36.336 23.594 ? 64 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 11.800 15.000 ? 216 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 16.281 15.000 ? 6 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.111 0.200 ? 219 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.008 0.021 ? 1587 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 329 ? 'X-RAY DIFFRACTION' r_mcbond_it 1.617 1.475 ? 638 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.585 1.471 ? 637 ? 'X-RAY DIFFRACTION' r_mcangle_it 2.501 2.199 ? 805 ? 'X-RAY DIFFRACTION' r_mcangle_other 2.506 2.203 ? 806 ? 'X-RAY DIFFRACTION' r_scbond_it 2.721 2.085 ? 831 ? 'X-RAY DIFFRACTION' r_scbond_other 2.720 2.088 ? 832 ? 'X-RAY DIFFRACTION' r_scangle_other 4.541 2.933 ? 1197 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 7.926 14.665 ? 1740 ? 'X-RAY DIFFRACTION' r_long_range_B_other 7.669 14.139 ? 1667 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.852 _refine_ls_shell.d_res_low 1.900 _refine_ls_shell.number_reflns_R_work 775 _refine_ls_shell.R_factor_R_work 0.187 _refine_ls_shell.percent_reflns_obs 83.86 _refine_ls_shell.R_factor_R_free 0.325 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 41 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4NYS _struct.title 'Structure at 1.9 A resolution of a glycosylated, lipid-binding, lipocalin-like protein' _struct.pdbx_descriptor 'Milk protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4NYS _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'In-vivo crystallization, cockroach, lipocalin, Lipocalin fold, Fatty acid binding protein, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 4 ? I N N 5 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 131 ? VAL A 145 ? LYS A 122 VAL A 136 1 ? 15 HELX_P HELX_P2 2 ASP A 148 ? PHE A 152 ? ASP A 139 PHE A 143 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 4 A CYS 137 1_555 ? ? ? ? ? ? ? 2.025 ? disulf2 disulf ? ? A CYS 129 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 120 A CYS 151 1_555 ? ? ? ? ? ? ? 1.989 ? covale1 covale ? ? B NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? A NAG 201 A NAG 202 1_555 ? ? ? ? ? ? ? 1.421 ? covale2 covale ? ? C NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? A NAG 202 A BMA 203 1_555 ? ? ? ? ? ? ? 1.421 ? covale3 covale ? ? A ASN 88 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 79 A NAG 204 1_555 ? ? ? ? ? ? ? 1.435 ? covale4 covale ? ? E NAG . O4 ? ? ? 1_555 F NAG . C1 ? ? A NAG 204 A NAG 205 1_555 ? ? ? ? ? ? ? 1.458 ? covale5 covale ? ? A ASN 154 ND2 ? ? ? 1_555 G NAG . C1 ? ? A ASN 145 A NAG 206 1_555 ? ? ? ? ? ? ? 1.469 ? covale6 covale ? ? A ASN 44 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 A NAG 201 1_555 ? ? ? ? ? ? ? 1.476 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 35 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 26 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 36 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 27 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.82 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 153 ? ASN A 154 ? GLY A 144 ASN A 145 A 2 GLY A 27 ? SER A 35 ? GLY A 18 SER A 26 A 3 LEU A 120 ? TYR A 125 ? LEU A 111 TYR A 116 A 4 TYR A 106 ? GLY A 111 ? TYR A 97 GLY A 102 A 5 SER A 95 ? VAL A 102 ? SER A 86 VAL A 93 A 6 THR A 82 ? MET A 87 ? THR A 73 MET A 78 A 7 GLY A 68 ? SER A 79 ? GLY A 59 SER A 70 A 8 ASP A 55 ? SER A 64 ? ASP A 46 SER A 55 A 9 SER A 43 ? HIS A 52 ? SER A 34 HIS A 43 A 10 GLY A 27 ? SER A 35 ? GLY A 18 SER A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 153 ? O GLY A 144 N THR A 34 ? N THR A 25 A 2 3 N SER A 35 ? N SER A 26 O ALA A 121 ? O ALA A 112 A 3 4 O HIS A 124 ? O HIS A 115 N PHE A 107 ? N PHE A 98 A 4 5 O ILE A 108 ? O ILE A 99 N LEU A 100 ? N LEU A 91 A 5 6 O TYR A 97 ? O TYR A 88 N LEU A 83 ? N LEU A 74 A 6 7 O THR A 82 ? O THR A 73 N SER A 79 ? N SER A 70 A 7 8 O GLU A 70 ? O GLU A 61 N ASP A 62 ? N ASP A 53 A 8 9 O TYR A 57 ? O TYR A 48 N SER A 50 ? N SER A 41 A 9 10 O GLU A 47 ? O GLU A 38 N TRP A 29 ? N TRP A 20 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE OLA A 207' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE EIC A 208' AC3 Software ? ? ? ? 17 'BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 35 RESIDUES 201 TO 203' AC4 Software ? ? ? ? 9 'BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 79 RESIDUES 204 TO 205' AC5 Software ? ? ? ? 6 'BINDING SITE FOR MONO-SACCHARIDE NAG A 206 BOUND TO ASN A 145' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ASP A 62 ? ASP A 53 . ? 1_555 ? 2 AC1 8 HIS A 72 ? HIS A 63 . ? 1_555 ? 3 AC1 8 PHE A 85 ? PHE A 76 . ? 1_555 ? 4 AC1 8 THR A 90 ? THR A 81 . ? 1_555 ? 5 AC1 8 GLU A 92 ? GLU A 83 . ? 1_555 ? 6 AC1 8 TYR A 93 ? TYR A 84 . ? 1_555 ? 7 AC1 8 TYR A 97 ? TYR A 88 . ? 1_555 ? 8 AC1 8 PHE A 109 ? PHE A 100 . ? 1_555 ? 9 AC2 11 GLN A 41 ? GLN A 32 . ? 1_555 ? 10 AC2 11 VAL A 42 ? VAL A 33 . ? 1_555 ? 11 AC2 11 ALA A 51 ? ALA A 42 . ? 1_545 ? 12 AC2 11 TYR A 57 ? TYR A 48 . ? 1_545 ? 13 AC2 11 VAL A 60 ? VAL A 51 . ? 1_555 ? 14 AC2 11 ASP A 62 ? ASP A 53 . ? 1_555 ? 15 AC2 11 GLU A 70 ? GLU A 61 . ? 1_555 ? 16 AC2 11 HIS A 72 ? HIS A 63 . ? 1_555 ? 17 AC2 11 PHE A 85 ? PHE A 76 . ? 1_555 ? 18 AC2 11 PHE A 109 ? PHE A 100 . ? 1_555 ? 19 AC2 11 HOH J . ? HOH A 481 . ? 1_555 ? 20 AC3 17 ASN A 44 ? ASN A 35 . ? 1_555 ? 21 AC3 17 THR A 61 ? THR A 52 . ? 1_555 ? 22 AC3 17 TYR A 63 ? TYR A 54 . ? 1_555 ? 23 AC3 17 SER A 95 ? SER A 86 . ? 1_455 ? 24 AC3 17 LYS A 96 ? LYS A 87 . ? 1_455 ? 25 AC3 17 HIS A 112 ? HIS A 103 . ? 1_455 ? 26 AC3 17 PRO A 113 ? PRO A 104 . ? 1_455 ? 27 AC3 17 PRO A 114 ? PRO A 105 . ? 1_455 ? 28 AC3 17 PRO A 117 ? PRO A 108 . ? 1_455 ? 29 AC3 17 HOH J . ? HOH A 313 . ? 1_555 ? 30 AC3 17 HOH J . ? HOH A 351 . ? 1_555 ? 31 AC3 17 HOH J . ? HOH A 355 . ? 1_555 ? 32 AC3 17 HOH J . ? HOH A 374 . ? 1_555 ? 33 AC3 17 HOH J . ? HOH A 421 . ? 1_555 ? 34 AC3 17 HOH J . ? HOH A 446 . ? 1_555 ? 35 AC3 17 HOH J . ? HOH A 454 . ? 1_455 ? 36 AC3 17 HOH J . ? HOH A 480 . ? 1_555 ? 37 AC4 9 ALA A 71 ? ALA A 62 . ? 1_555 ? 38 AC4 9 ARG A 73 ? ARG A 64 . ? 1_555 ? 39 AC4 9 ASN A 88 ? ASN A 79 . ? 1_555 ? 40 AC4 9 ASP A 103 ? ASP A 94 . ? 1_556 ? 41 AC4 9 ARG A 137 ? ARG A 128 . ? 1_556 ? 42 AC4 9 HOH J . ? HOH A 339 . ? 1_555 ? 43 AC4 9 HOH J . ? HOH A 376 . ? 1_555 ? 44 AC4 9 HOH J . ? HOH A 395 . ? 1_555 ? 45 AC4 9 HOH J . ? HOH A 424 . ? 1_555 ? 46 AC5 6 ILE A 135 ? ILE A 126 . ? 1_555 ? 47 AC5 6 TYR A 149 ? TYR A 140 . ? 1_555 ? 48 AC5 6 PHE A 152 ? PHE A 143 . ? 1_555 ? 49 AC5 6 ASN A 154 ? ASN A 145 . ? 1_555 ? 50 AC5 6 HOH J . ? HOH A 370 . ? 1_555 ? 51 AC5 6 HOH J . ? HOH A 452 . ? 1_555 ? # _database_PDB_matrix.entry_id 4NYS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4NYS _atom_sites.fract_transf_matrix[1][1] 0.031172 _atom_sites.fract_transf_matrix[1][2] 0.007703 _atom_sites.fract_transf_matrix[1][3] 0.007452 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030970 _atom_sites.fract_transf_matrix[2][3] 0.006845 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026035 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 -8 ? ? ? A . n A 1 2 ALA 2 -7 ? ? ? A . n A 1 3 ALA 3 -6 ? ? ? A . n A 1 4 ILE 4 -5 ? ? ? A . n A 1 5 LEU 5 -4 ? ? ? A . n A 1 6 VAL 6 -3 ? ? ? A . n A 1 7 ALA 7 -2 ? ? ? A . n A 1 8 ASN 8 -1 ? ? ? A . n A 1 9 ALA 9 0 ? ? ? A . n A 1 10 LYS 10 1 1 LYS LYS A . n A 1 11 GLU 11 2 2 GLU GLU A . n A 1 12 PRO 12 3 3 PRO PRO A . n A 1 13 CYS 13 4 4 CYS CYS A . n A 1 14 PRO 14 5 5 PRO PRO A . n A 1 15 PRO 15 6 6 PRO PRO A . n A 1 16 GLU 16 7 7 GLU GLU A . n A 1 17 ASN 17 8 8 ASN ASN A . n A 1 18 LEU 18 9 9 LEU LEU A . n A 1 19 GLN 19 10 10 GLN GLN A . n A 1 20 LEU 20 11 11 LEU LEU A . n A 1 21 THR 21 12 12 THR THR A . n A 1 22 PRO 22 13 13 PRO PRO A . n A 1 23 ARG 23 14 14 ARG ARG A . n A 1 24 ALA 24 15 15 ALA ALA A . n A 1 25 LEU 25 16 16 LEU LEU A . n A 1 26 VAL 26 17 17 VAL VAL A . n A 1 27 GLY 27 18 18 GLY GLY A . n A 1 28 LYS 28 19 19 LYS LYS A . n A 1 29 TRP 29 20 20 TRP TRP A . n A 1 30 TYR 30 21 21 TYR TYR A . n A 1 31 LEU 31 22 22 LEU LEU A . n A 1 32 ARG 32 23 23 ARG ARG A . n A 1 33 THR 33 24 24 THR THR A . n A 1 34 THR 34 25 25 THR THR A . n A 1 35 SER 35 26 26 SER SER A . n A 1 36 PRO 36 27 27 PRO PRO A . n A 1 37 ASP 37 28 28 ASP ASP A . n A 1 38 ILE 38 29 29 ILE ILE A . n A 1 39 PHE 39 30 30 PHE PHE A . n A 1 40 LYS 40 31 31 LYS LYS A . n A 1 41 GLN 41 32 32 GLN GLN A . n A 1 42 VAL 42 33 33 VAL VAL A . n A 1 43 SER 43 34 34 SER SER A . n A 1 44 ASN 44 35 35 ASN ASN A . n A 1 45 ILE 45 36 36 ILE ILE A . n A 1 46 THR 46 37 37 THR THR A . n A 1 47 GLU 47 38 38 GLU GLU A . n A 1 48 PHE 48 39 39 PHE PHE A . n A 1 49 TYR 49 40 40 TYR TYR A . n A 1 50 SER 50 41 41 SER SER A . n A 1 51 ALA 51 42 42 ALA ALA A . n A 1 52 HIS 52 43 43 HIS HIS A . n A 1 53 GLY 53 44 44 GLY GLY A . n A 1 54 ASN 54 45 45 ASN ASN A . n A 1 55 ASP 55 46 46 ASP ASP A . n A 1 56 TYR 56 47 47 TYR TYR A . n A 1 57 TYR 57 48 48 TYR TYR A . n A 1 58 GLY 58 49 49 GLY GLY A . n A 1 59 THR 59 50 50 THR THR A . n A 1 60 VAL 60 51 51 VAL VAL A . n A 1 61 THR 61 52 52 THR THR A . n A 1 62 ASP 62 53 53 ASP ASP A . n A 1 63 TYR 63 54 54 TYR TYR A . n A 1 64 SER 64 55 55 SER SER A . n A 1 65 PRO 65 56 56 PRO PRO A . n A 1 66 GLU 66 57 57 GLU GLU A . n A 1 67 TYR 67 58 58 TYR TYR A . n A 1 68 GLY 68 59 59 GLY GLY A . n A 1 69 LEU 69 60 60 LEU LEU A . n A 1 70 GLU 70 61 61 GLU GLU A . n A 1 71 ALA 71 62 62 ALA ALA A . n A 1 72 HIS 72 63 63 HIS HIS A . n A 1 73 ARG 73 64 64 ARG ARG A . n A 1 74 VAL 74 65 65 VAL VAL A . n A 1 75 ASN 75 66 66 ASN ASN A . n A 1 76 LEU 76 67 67 LEU LEU A . n A 1 77 THR 77 68 68 THR THR A . n A 1 78 VAL 78 69 69 VAL VAL A . n A 1 79 SER 79 70 70 SER SER A . n A 1 80 GLY 80 71 71 GLY GLY A . n A 1 81 ARG 81 72 72 ARG ARG A . n A 1 82 THR 82 73 73 THR THR A . n A 1 83 LEU 83 74 74 LEU LEU A . n A 1 84 LYS 84 75 75 LYS LYS A . n A 1 85 PHE 85 76 76 PHE PHE A . n A 1 86 TYR 86 77 77 TYR TYR A . n A 1 87 MET 87 78 78 MET MET A . n A 1 88 ASN 88 79 79 ASN ASN A . n A 1 89 ASP 89 80 80 ASP ASP A . n A 1 90 THR 90 81 81 THR THR A . n A 1 91 HIS 91 82 82 HIS HIS A . n A 1 92 GLU 92 83 83 GLU GLU A . n A 1 93 TYR 93 84 84 TYR TYR A . n A 1 94 ASP 94 85 85 ASP ASP A . n A 1 95 SER 95 86 86 SER SER A . n A 1 96 LYS 96 87 87 LYS LYS A . n A 1 97 TYR 97 88 88 TYR TYR A . n A 1 98 GLU 98 89 89 GLU GLU A . n A 1 99 ILE 99 90 90 ILE ILE A . n A 1 100 LEU 100 91 91 LEU LEU A . n A 1 101 ALA 101 92 92 ALA ALA A . n A 1 102 VAL 102 93 93 VAL VAL A . n A 1 103 ASP 103 94 94 ASP ASP A . n A 1 104 LYS 104 95 95 LYS LYS A . n A 1 105 ASP 105 96 96 ASP ASP A . n A 1 106 TYR 106 97 97 TYR TYR A . n A 1 107 PHE 107 98 98 PHE PHE A . n A 1 108 ILE 108 99 99 ILE ILE A . n A 1 109 PHE 109 100 100 PHE PHE A . n A 1 110 TYR 110 101 101 TYR TYR A . n A 1 111 GLY 111 102 102 GLY GLY A . n A 1 112 HIS 112 103 103 HIS HIS A . n A 1 113 PRO 113 104 104 PRO PRO A . n A 1 114 PRO 114 105 105 PRO PRO A . n A 1 115 ALA 115 106 106 ALA ALA A . n A 1 116 ALA 116 107 107 ALA ALA A . n A 1 117 PRO 117 108 108 PRO PRO A . n A 1 118 SER 118 109 109 SER SER A . n A 1 119 GLY 119 110 110 GLY GLY A . n A 1 120 LEU 120 111 111 LEU LEU A . n A 1 121 ALA 121 112 112 ALA ALA A . n A 1 122 LEU 122 113 113 LEU LEU A . n A 1 123 ILE 123 114 114 ILE ILE A . n A 1 124 HIS 124 115 115 HIS HIS A . n A 1 125 TYR 125 116 116 TYR TYR A . n A 1 126 ARG 126 117 117 ARG ARG A . n A 1 127 GLN 127 118 118 GLN GLN A . n A 1 128 SER 128 119 119 SER SER A . n A 1 129 CYS 129 120 120 CYS CYS A . n A 1 130 PRO 130 121 121 PRO PRO A . n A 1 131 LYS 131 122 122 LYS LYS A . n A 1 132 GLU 132 123 123 GLU GLU A . n A 1 133 ASP 133 124 124 ASP ASP A . n A 1 134 VAL 134 125 125 VAL VAL A . n A 1 135 ILE 135 126 126 ILE ILE A . n A 1 136 LYS 136 127 127 LYS LYS A . n A 1 137 ARG 137 128 128 ARG ARG A . n A 1 138 VAL 138 129 129 VAL VAL A . n A 1 139 LYS 139 130 130 LYS LYS A . n A 1 140 LYS 140 131 131 LYS LYS A . n A 1 141 ALA 141 132 132 ALA ALA A . n A 1 142 LEU 142 133 133 LEU LEU A . n A 1 143 LYS 143 134 134 LYS LYS A . n A 1 144 ASN 144 135 135 ASN ASN A . n A 1 145 VAL 145 136 136 VAL VAL A . n A 1 146 CYS 146 137 137 CYS CYS A . n A 1 147 LEU 147 138 138 LEU LEU A . n A 1 148 ASP 148 139 139 ASP ASP A . n A 1 149 TYR 149 140 140 TYR TYR A . n A 1 150 LYS 150 141 141 LYS LYS A . n A 1 151 TYR 151 142 142 TYR TYR A . n A 1 152 PHE 152 143 143 PHE PHE A . n A 1 153 GLY 153 144 144 GLY GLY A . n A 1 154 ASN 154 145 145 ASN ASN A . n A 1 155 ASP 155 146 146 ASP ASP A . n A 1 156 THR 156 147 147 THR THR A . n A 1 157 SER 157 148 148 SER SER A . n A 1 158 VAL 158 149 149 VAL VAL A . n A 1 159 PRO 159 150 150 PRO PRO A . n A 1 160 CYS 160 151 151 CYS CYS A . n A 1 161 HIS 161 152 152 HIS HIS A . n A 1 162 TYR 162 153 153 TYR TYR A . n A 1 163 VAL 163 154 ? ? ? A . n A 1 164 GLU 164 155 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 201 154 NAG NAG A . C 2 NAG 2 202 155 NAG NAG A . D 3 BMA 3 203 156 BMA MAN A . E 2 NAG 1 204 158 NAG NAG A . F 2 NAG 2 205 159 NAG NAG A . G 2 NAG 1 206 160 NAG NAG A . H 4 OLA 1 207 1 OLA OLA A . I 5 EIC 1 208 1 EIC EIC A . J 6 HOH 1 301 1 HOH HOH A . J 6 HOH 2 302 2 HOH HOH A . J 6 HOH 3 303 3 HOH HOH A . J 6 HOH 4 304 4 HOH HOH A . J 6 HOH 5 305 5 HOH HOH A . J 6 HOH 6 306 6 HOH HOH A . J 6 HOH 7 307 7 HOH HOH A . J 6 HOH 8 308 8 HOH HOH A . J 6 HOH 9 309 9 HOH HOH A . J 6 HOH 10 310 10 HOH HOH A . J 6 HOH 11 311 11 HOH HOH A . J 6 HOH 12 312 12 HOH HOH A . J 6 HOH 13 313 14 HOH HOH A . J 6 HOH 14 314 15 HOH HOH A . J 6 HOH 15 315 16 HOH HOH A . J 6 HOH 16 316 17 HOH HOH A . J 6 HOH 17 317 18 HOH HOH A . J 6 HOH 18 318 19 HOH HOH A . J 6 HOH 19 319 20 HOH HOH A . J 6 HOH 20 320 21 HOH HOH A . J 6 HOH 21 321 22 HOH HOH A . J 6 HOH 22 322 23 HOH HOH A . J 6 HOH 23 323 24 HOH HOH A . J 6 HOH 24 324 25 HOH HOH A . J 6 HOH 25 325 27 HOH HOH A . J 6 HOH 26 326 28 HOH HOH A . J 6 HOH 27 327 29 HOH HOH A . J 6 HOH 28 328 30 HOH HOH A . J 6 HOH 29 329 31 HOH HOH A . J 6 HOH 30 330 32 HOH HOH A . J 6 HOH 31 331 33 HOH HOH A . J 6 HOH 32 332 34 HOH HOH A . J 6 HOH 33 333 35 HOH HOH A . J 6 HOH 34 334 36 HOH HOH A . J 6 HOH 35 335 37 HOH HOH A . J 6 HOH 36 336 38 HOH HOH A . J 6 HOH 37 337 39 HOH HOH A . J 6 HOH 38 338 40 HOH HOH A . J 6 HOH 39 339 41 HOH HOH A . J 6 HOH 40 340 42 HOH HOH A . J 6 HOH 41 341 43 HOH HOH A . J 6 HOH 42 342 44 HOH HOH A . J 6 HOH 43 343 45 HOH HOH A . J 6 HOH 44 344 46 HOH HOH A . J 6 HOH 45 345 47 HOH HOH A . J 6 HOH 46 346 48 HOH HOH A . J 6 HOH 47 347 49 HOH HOH A . J 6 HOH 48 348 50 HOH HOH A . J 6 HOH 49 349 51 HOH HOH A . J 6 HOH 50 350 52 HOH HOH A . J 6 HOH 51 351 53 HOH HOH A . J 6 HOH 52 352 54 HOH HOH A . J 6 HOH 53 353 55 HOH HOH A . J 6 HOH 54 354 56 HOH HOH A . J 6 HOH 55 355 57 HOH HOH A . J 6 HOH 56 356 58 HOH HOH A . J 6 HOH 57 357 59 HOH HOH A . J 6 HOH 58 358 60 HOH HOH A . J 6 HOH 59 359 61 HOH HOH A . J 6 HOH 60 360 63 HOH HOH A . J 6 HOH 61 361 64 HOH HOH A . J 6 HOH 62 362 65 HOH HOH A . J 6 HOH 63 363 66 HOH HOH A . J 6 HOH 64 364 67 HOH HOH A . J 6 HOH 65 365 69 HOH HOH A . J 6 HOH 66 366 70 HOH HOH A . J 6 HOH 67 367 71 HOH HOH A . J 6 HOH 68 368 73 HOH HOH A . J 6 HOH 69 369 74 HOH HOH A . J 6 HOH 70 370 75 HOH HOH A . J 6 HOH 71 371 76 HOH HOH A . J 6 HOH 72 372 77 HOH HOH A . J 6 HOH 73 373 78 HOH HOH A . J 6 HOH 74 374 80 HOH HOH A . J 6 HOH 75 375 81 HOH HOH A . J 6 HOH 76 376 82 HOH HOH A . J 6 HOH 77 377 83 HOH HOH A . J 6 HOH 78 378 84 HOH HOH A . J 6 HOH 79 379 85 HOH HOH A . J 6 HOH 80 380 86 HOH HOH A . J 6 HOH 81 381 87 HOH HOH A . J 6 HOH 82 382 88 HOH HOH A . J 6 HOH 83 383 89 HOH HOH A . J 6 HOH 84 384 90 HOH HOH A . J 6 HOH 85 385 91 HOH HOH A . J 6 HOH 86 386 92 HOH HOH A . J 6 HOH 87 387 94 HOH HOH A . J 6 HOH 88 388 95 HOH HOH A . J 6 HOH 89 389 96 HOH HOH A . J 6 HOH 90 390 99 HOH HOH A . J 6 HOH 91 391 100 HOH HOH A . J 6 HOH 92 392 102 HOH HOH A . J 6 HOH 93 393 104 HOH HOH A . J 6 HOH 94 394 105 HOH HOH A . J 6 HOH 95 395 107 HOH HOH A . J 6 HOH 96 396 108 HOH HOH A . J 6 HOH 97 397 109 HOH HOH A . J 6 HOH 98 398 113 HOH HOH A . J 6 HOH 99 399 114 HOH HOH A . J 6 HOH 100 400 115 HOH HOH A . J 6 HOH 101 401 117 HOH HOH A . J 6 HOH 102 402 118 HOH HOH A . J 6 HOH 103 403 120 HOH HOH A . J 6 HOH 104 404 122 HOH HOH A . J 6 HOH 105 405 124 HOH HOH A . J 6 HOH 106 406 126 HOH HOH A . J 6 HOH 107 407 128 HOH HOH A . J 6 HOH 108 408 129 HOH HOH A . J 6 HOH 109 409 130 HOH HOH A . J 6 HOH 110 410 131 HOH HOH A . J 6 HOH 111 411 132 HOH HOH A . J 6 HOH 112 412 133 HOH HOH A . J 6 HOH 113 413 137 HOH HOH A . J 6 HOH 114 414 138 HOH HOH A . J 6 HOH 115 415 139 HOH HOH A . J 6 HOH 116 416 141 HOH HOH A . J 6 HOH 117 417 143 HOH HOH A . J 6 HOH 118 418 144 HOH HOH A . J 6 HOH 119 419 146 HOH HOH A . J 6 HOH 120 420 147 HOH HOH A . J 6 HOH 121 421 148 HOH HOH A . J 6 HOH 122 422 149 HOH HOH A . J 6 HOH 123 423 150 HOH HOH A . J 6 HOH 124 424 151 HOH HOH A . J 6 HOH 125 425 154 HOH HOH A . J 6 HOH 126 426 155 HOH HOH A . J 6 HOH 127 427 157 HOH HOH A . J 6 HOH 128 428 158 HOH HOH A . J 6 HOH 129 429 159 HOH HOH A . J 6 HOH 130 430 161 HOH HOH A . J 6 HOH 131 431 162 HOH HOH A . J 6 HOH 132 432 166 HOH HOH A . J 6 HOH 133 433 169 HOH HOH A . J 6 HOH 134 434 172 HOH HOH A . J 6 HOH 135 435 176 HOH HOH A . J 6 HOH 136 436 177 HOH HOH A . J 6 HOH 137 437 178 HOH HOH A . J 6 HOH 138 438 179 HOH HOH A . J 6 HOH 139 439 182 HOH HOH A . J 6 HOH 140 440 184 HOH HOH A . J 6 HOH 141 441 185 HOH HOH A . J 6 HOH 142 442 186 HOH HOH A . J 6 HOH 143 443 187 HOH HOH A . J 6 HOH 144 444 189 HOH HOH A . J 6 HOH 145 445 191 HOH HOH A . J 6 HOH 146 446 192 HOH HOH A . J 6 HOH 147 447 194 HOH HOH A . J 6 HOH 148 448 196 HOH HOH A . J 6 HOH 149 449 200 HOH HOH A . J 6 HOH 150 450 201 HOH HOH A . J 6 HOH 151 451 202 HOH HOH A . J 6 HOH 152 452 203 HOH HOH A . J 6 HOH 153 453 205 HOH HOH A . J 6 HOH 154 454 207 HOH HOH A . J 6 HOH 155 455 208 HOH HOH A . J 6 HOH 156 456 210 HOH HOH A . J 6 HOH 157 457 211 HOH HOH A . J 6 HOH 158 458 214 HOH HOH A . J 6 HOH 159 459 215 HOH HOH A . J 6 HOH 160 460 216 HOH HOH A . J 6 HOH 161 461 221 HOH HOH A . J 6 HOH 162 462 226 HOH HOH A . J 6 HOH 163 463 227 HOH HOH A . J 6 HOH 164 464 228 HOH HOH A . J 6 HOH 165 465 229 HOH HOH A . J 6 HOH 166 466 230 HOH HOH A . J 6 HOH 167 467 232 HOH HOH A . J 6 HOH 168 468 234 HOH HOH A . J 6 HOH 169 469 236 HOH HOH A . J 6 HOH 170 470 237 HOH HOH A . J 6 HOH 171 471 238 HOH HOH A . J 6 HOH 172 472 239 HOH HOH A . J 6 HOH 173 473 240 HOH HOH A . J 6 HOH 174 474 241 HOH HOH A . J 6 HOH 175 475 242 HOH HOH A . J 6 HOH 176 476 244 HOH HOH A . J 6 HOH 177 477 245 HOH HOH A . J 6 HOH 178 478 247 HOH HOH A . J 6 HOH 179 479 248 HOH HOH A . J 6 HOH 180 480 249 HOH HOH A . J 6 HOH 181 481 250 HOH HOH A . J 6 HOH 182 482 252 HOH HOH A . J 6 HOH 183 483 253 HOH HOH A . J 6 HOH 184 484 254 HOH HOH A . J 6 HOH 185 485 255 HOH HOH A . J 6 HOH 186 486 256 HOH HOH A . J 6 HOH 187 487 257 HOH HOH A . J 6 HOH 188 488 258 HOH HOH A . J 6 HOH 189 489 259 HOH HOH A . J 6 HOH 190 490 260 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 88 A ASN 79 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 154 A ASN 145 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 44 A ASN 35 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-01 2 'Structure model' 1 1 2015-12-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal In-house 'data collection' . ? 1 SOLVE 'model building' . ? 2 REFMAC refinement 5.7.0032 ? 3 d*TREK 'data reduction' . ? 4 d*TREK 'data scaling' . ? 5 SOLVE phasing . ? 6 # _pdbx_entry_details.entry_id 4NYS _pdbx_entry_details.nonpolymer_details 'OLA A 207 AND EIC A 208 ARE IN ALTERNATE CONFORMATIONS.' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 401 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 440 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 107 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -155.22 _pdbx_validate_torsion.psi 76.24 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE -8 ? A ILE 1 2 1 Y 1 A ALA -7 ? A ALA 2 3 1 Y 1 A ALA -6 ? A ALA 3 4 1 Y 1 A ILE -5 ? A ILE 4 5 1 Y 1 A LEU -4 ? A LEU 5 6 1 Y 1 A VAL -3 ? A VAL 6 7 1 Y 1 A ALA -2 ? A ALA 7 8 1 Y 1 A ASN -1 ? A ASN 8 9 1 Y 1 A ALA 0 ? A ALA 9 10 1 Y 1 A VAL 154 ? A VAL 163 11 1 Y 1 A GLU 155 ? A GLU 164 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 N-ACETYL-D-GLUCOSAMINE NAG 3 BETA-D-MANNOSE BMA 4 'OLEIC ACID' OLA 5 'LINOLEIC ACID' EIC 6 water HOH #