HEADER TRANSCRIPTION 11-DEC-13 4NYV TITLE CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN CREBBP IN COMPLEX WITH A TITLE 2 QUINAZOLIN-ONE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1081-1197; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBP, CREBBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS CREBBP, CREB BINDING, KAT3A, RSTS, RST, BROMODOMAIN, TRANSCRIPTION, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,S.PICAUD,I.FELLETAR,O.FEDOROV,S.MARTIN, AUTHOR 2 O.P.MONTEIRO,F.VON DELFT,P.BRENNAN,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 C.BOUNTRA,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 20-SEP-23 4NYV 1 REMARK SEQADV REVDAT 2 31-JAN-18 4NYV 1 AUTHOR JRNL REVDAT 1 29-JAN-14 4NYV 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,I.FELLETAR,O.FEDOROV,S.MARTIN, JRNL AUTH 2 O.P.MONTEIRO,F.VON DELFT,P.BRENNAN,C.H.ARROWSMITH, JRNL AUTH 3 A.M.EDWARDS,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN CREBBP IN JRNL TITL 2 COMPLEX WITH A QUINAZOLIN-ONE LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 40265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2714 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.4530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 262 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : -0.64000 REMARK 3 B23 (A**2) : -0.35000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4045 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2812 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5512 ; 1.497 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6824 ; 0.957 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 5.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;38.384 ;24.619 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;13.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;20.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4406 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 804 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1081 A 1157 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1420 53.2908 76.7097 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.0192 REMARK 3 T33: 0.0296 T12: -0.0004 REMARK 3 T13: 0.0043 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.3094 L22: 0.3295 REMARK 3 L33: 0.9755 L12: 0.1983 REMARK 3 L13: 0.1897 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: 0.0426 S12: -0.0189 S13: -0.0097 REMARK 3 S21: 0.0574 S22: 0.0133 S23: 0.0213 REMARK 3 S31: -0.0219 S32: 0.0113 S33: -0.0559 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1158 A 1182 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1644 54.0558 62.1324 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0274 REMARK 3 T33: 0.0335 T12: 0.0202 REMARK 3 T13: -0.0148 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.6362 L22: 0.0657 REMARK 3 L33: 1.0732 L12: -0.0199 REMARK 3 L13: -0.3902 L23: -0.2204 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0779 S13: 0.0043 REMARK 3 S21: -0.0006 S22: -0.0010 S23: 0.0086 REMARK 3 S31: -0.0076 S32: -0.0399 S33: -0.0297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1183 A 1196 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6925 66.9753 73.3421 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.0263 REMARK 3 T33: 0.0696 T12: 0.0177 REMARK 3 T13: 0.1003 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.3193 L22: 2.8422 REMARK 3 L33: 7.1910 L12: 1.3098 REMARK 3 L13: 4.0477 L23: 2.4989 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: 0.1144 S13: 0.0687 REMARK 3 S21: 0.0563 S22: 0.0635 S23: 0.0337 REMARK 3 S31: -0.3414 S32: 0.1743 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1082 B 1114 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9089 29.5463 80.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.0517 REMARK 3 T33: 0.0629 T12: 0.0412 REMARK 3 T13: -0.0752 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.9539 L22: 0.2812 REMARK 3 L33: 1.6619 L12: -0.0234 REMARK 3 L13: -0.2295 L23: -0.4091 REMARK 3 S TENSOR REMARK 3 S11: 0.1632 S12: 0.0229 S13: -0.0551 REMARK 3 S21: -0.2087 S22: -0.0518 S23: 0.1032 REMARK 3 S31: 0.2519 S32: -0.1371 S33: -0.1115 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1115 B 1168 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4550 39.3290 86.4206 REMARK 3 T TENSOR REMARK 3 T11: 0.0245 T22: 0.0404 REMARK 3 T33: 0.0469 T12: -0.0155 REMARK 3 T13: 0.0162 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.0559 L22: 1.0596 REMARK 3 L33: 0.5685 L12: -0.1351 REMARK 3 L13: -0.1217 L23: -0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.0094 S13: -0.0012 REMARK 3 S21: -0.0391 S22: -0.0314 S23: 0.0394 REMARK 3 S31: -0.0061 S32: 0.0275 S33: 0.0149 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1169 B 1196 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6358 27.4818 92.4589 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.0367 REMARK 3 T33: 0.0806 T12: -0.0652 REMARK 3 T13: -0.0489 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.9564 L22: 1.5687 REMARK 3 L33: 1.9878 L12: -0.9491 REMARK 3 L13: -1.1230 L23: 0.8161 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.0418 S13: 0.0055 REMARK 3 S21: -0.0234 S22: 0.0868 S23: 0.0565 REMARK 3 S31: 0.1816 S32: -0.0794 S33: -0.1591 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1083 C 1108 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8907 37.9621 48.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.0339 REMARK 3 T33: 0.0513 T12: 0.0105 REMARK 3 T13: 0.0505 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.7421 L22: 0.2618 REMARK 3 L33: 4.5892 L12: 0.8506 REMARK 3 L13: 4.1595 L23: 0.9372 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.3206 S13: 0.0684 REMARK 3 S21: 0.0213 S22: -0.0459 S23: 0.0595 REMARK 3 S31: -0.3028 S32: -0.2743 S33: 0.0678 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1109 C 1168 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2356 26.6705 39.1956 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0378 REMARK 3 T33: 0.0414 T12: 0.0053 REMARK 3 T13: 0.0049 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.1091 L22: 0.6496 REMARK 3 L33: 0.9057 L12: 0.0323 REMARK 3 L13: 0.1167 L23: 0.2451 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.0098 S13: -0.0063 REMARK 3 S21: 0.0132 S22: -0.0183 S23: 0.0423 REMARK 3 S31: 0.0330 S32: 0.0425 S33: -0.0489 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1169 C 1196 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2642 38.1560 33.6583 REMARK 3 T TENSOR REMARK 3 T11: 0.1012 T22: 0.0469 REMARK 3 T33: 0.0864 T12: 0.0482 REMARK 3 T13: 0.0623 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.8220 L22: 0.7275 REMARK 3 L33: 3.1884 L12: 0.6506 REMARK 3 L13: 1.4924 L23: 1.2137 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.1233 S13: 0.0213 REMARK 3 S21: 0.0247 S22: 0.0826 S23: 0.0341 REMARK 3 S31: -0.1285 S32: 0.1246 S33: -0.1274 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1083 D 1147 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1487 65.3539 48.8026 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0213 REMARK 3 T33: 0.0437 T12: -0.0014 REMARK 3 T13: -0.0049 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3332 L22: 0.3588 REMARK 3 L33: 0.8102 L12: -0.2119 REMARK 3 L13: -0.3234 L23: -0.1077 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: 0.0063 S13: -0.0142 REMARK 3 S21: -0.0758 S22: -0.0040 S23: 0.0792 REMARK 3 S31: 0.0281 S32: -0.0076 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1148 D 1168 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4950 63.8921 53.7344 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0398 REMARK 3 T33: 0.0283 T12: 0.0027 REMARK 3 T13: -0.0085 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3690 L22: 0.8166 REMARK 3 L33: 0.8768 L12: -0.3489 REMARK 3 L13: -0.3755 L23: -0.0771 REMARK 3 S TENSOR REMARK 3 S11: 0.0321 S12: -0.0584 S13: -0.0024 REMARK 3 S21: -0.0913 S22: 0.0107 S23: 0.0272 REMARK 3 S31: 0.0916 S32: 0.0817 S33: -0.0428 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1169 D 1196 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5270 56.4160 58.1318 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.0314 REMARK 3 T33: 0.0822 T12: -0.0331 REMARK 3 T13: -0.0768 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.5988 L22: 1.6509 REMARK 3 L33: 2.2157 L12: -1.3068 REMARK 3 L13: -1.6197 L23: 1.1894 REMARK 3 S TENSOR REMARK 3 S11: 0.1153 S12: -0.0976 S13: -0.0622 REMARK 3 S21: -0.0119 S22: 0.0155 S23: 0.1218 REMARK 3 S31: 0.1554 S32: 0.0575 S33: -0.1309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4NYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.52 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40271 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 27.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : 0.39900 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: ENSEMBLE OF PDB ENTRIES 3DAI, 3HMH, 2GRC, 2OO1, REMARK 200 2OSS, 2OUO, 3D7C, AND 3DWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M KSCN, 25% PEG_3350, 5% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1079 REMARK 465 MET A 1080 REMARK 465 GLY A 1197 REMARK 465 SER B 1079 REMARK 465 MET B 1080 REMARK 465 ARG B 1081 REMARK 465 GLY B 1197 REMARK 465 SER C 1079 REMARK 465 MET C 1080 REMARK 465 ARG C 1081 REMARK 465 LYS C 1082 REMARK 465 GLY C 1197 REMARK 465 SER D 1079 REMARK 465 MET D 1080 REMARK 465 ARG D 1081 REMARK 465 LYS D 1082 REMARK 465 GLY D 1197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1081 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1082 CG CD CE NZ REMARK 470 LYS A1083 CD CE NZ REMARK 470 GLN A1194 CG CD OE1 NE2 REMARK 470 LYS B1082 CG CD CE NZ REMARK 470 LYS B1083 CD CE NZ REMARK 470 ILE B1084 CG1 CG2 CD1 REMARK 470 LYS B1086 CG CD CE NZ REMARK 470 GLU B1088 CG CD OE1 OE2 REMARK 470 GLU B1089 CD OE1 OE2 REMARK 470 SER B1195 OG REMARK 470 LYS C1083 CG CD CE NZ REMARK 470 ILE C1084 CG1 CG2 CD1 REMARK 470 GLN C1148 CD OE1 NE2 REMARK 470 GLN C1187 CD OE1 NE2 REMARK 470 GLN C1194 CD OE1 NE2 REMARK 470 SER C1195 OG REMARK 470 LYS D1083 CG CD CE NZ REMARK 470 ILE D1084 CG1 CG2 CD1 REMARK 470 LYS D1086 CD CE NZ REMARK 470 GLN D1118 CD OE1 NE2 REMARK 470 GLN D1194 CG CD OE1 NE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15E A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15E B 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15E C 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15E D 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NYW RELATED DB: PDB REMARK 900 RELATED ID: 4NYX RELATED DB: PDB DBREF 4NYV A 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 DBREF 4NYV B 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 DBREF 4NYV C 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 DBREF 4NYV D 1081 1197 UNP Q92793 CBP_HUMAN 1081 1197 SEQADV 4NYV SER A 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NYV MET A 1080 UNP Q92793 EXPRESSION TAG SEQADV 4NYV SER B 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NYV MET B 1080 UNP Q92793 EXPRESSION TAG SEQADV 4NYV SER C 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NYV MET C 1080 UNP Q92793 EXPRESSION TAG SEQADV 4NYV SER D 1079 UNP Q92793 EXPRESSION TAG SEQADV 4NYV MET D 1080 UNP Q92793 EXPRESSION TAG SEQRES 1 A 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 A 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 A 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 A 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 A 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 A 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 A 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 A 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 A 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 A 119 LEU GLY SEQRES 1 B 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 B 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 B 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 B 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 B 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 B 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 B 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 B 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 B 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 B 119 LEU GLY SEQRES 1 C 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 C 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 C 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 C 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 C 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 C 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 C 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 C 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 C 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 C 119 LEU GLY SEQRES 1 D 119 SER MET ARG LYS LYS ILE PHE LYS PRO GLU GLU LEU ARG SEQRES 2 D 119 GLN ALA LEU MET PRO THR LEU GLU ALA LEU TYR ARG GLN SEQRES 3 D 119 ASP PRO GLU SER LEU PRO PHE ARG GLN PRO VAL ASP PRO SEQRES 4 D 119 GLN LEU LEU GLY ILE PRO ASP TYR PHE ASP ILE VAL LYS SEQRES 5 D 119 ASN PRO MET ASP LEU SER THR ILE LYS ARG LYS LEU ASP SEQRES 6 D 119 THR GLY GLN TYR GLN GLU PRO TRP GLN TYR VAL ASP ASP SEQRES 7 D 119 VAL TRP LEU MET PHE ASN ASN ALA TRP LEU TYR ASN ARG SEQRES 8 D 119 LYS THR SER ARG VAL TYR LYS PHE CYS SER LYS LEU ALA SEQRES 9 D 119 GLU VAL PHE GLU GLN GLU ILE ASP PRO VAL MET GLN SER SEQRES 10 D 119 LEU GLY HET 15E A1201 13 HET 15E B1201 13 HET 15E C1201 13 HET 15E D1201 13 HETNAM 15E 6-BROMO-3-METHYL-3,4-DIHYDROQUINAZOLIN-2(1H)-ONE FORMUL 5 15E 4(C9 H9 BR N2 O) FORMUL 9 HOH *262(H2 O) HELIX 1 1 LYS A 1086 GLN A 1104 1 19 HELIX 2 2 SER A 1108 ARG A 1112 5 5 HELIX 3 3 ASP A 1116 GLY A 1121 1 6 HELIX 4 4 ASP A 1124 VAL A 1129 1 6 HELIX 5 5 ASP A 1134 THR A 1144 1 11 HELIX 6 6 GLU A 1149 ASN A 1168 1 20 HELIX 7 7 SER A 1172 LEU A 1196 1 25 HELIX 8 8 LYS B 1086 GLN B 1104 1 19 HELIX 9 9 SER B 1108 ARG B 1112 5 5 HELIX 10 10 ASP B 1116 GLY B 1121 1 6 HELIX 11 11 ASP B 1124 VAL B 1129 1 6 HELIX 12 12 ASP B 1134 THR B 1144 1 11 HELIX 13 13 GLU B 1149 ASN B 1168 1 20 HELIX 14 14 SER B 1172 LEU B 1196 1 25 HELIX 15 15 LYS C 1086 GLN C 1104 1 19 HELIX 16 16 SER C 1108 ARG C 1112 5 5 HELIX 17 17 ASP C 1116 GLY C 1121 1 6 HELIX 18 18 ASP C 1124 VAL C 1129 1 6 HELIX 19 19 ASP C 1134 GLY C 1145 1 12 HELIX 20 20 GLU C 1149 ASN C 1168 1 20 HELIX 21 21 SER C 1172 LEU C 1196 1 25 HELIX 22 22 LYS D 1086 GLN D 1104 1 19 HELIX 23 23 SER D 1108 ARG D 1112 5 5 HELIX 24 24 ASP D 1116 GLY D 1121 1 6 HELIX 25 25 ASP D 1124 VAL D 1129 1 6 HELIX 26 26 ASP D 1134 THR D 1144 1 11 HELIX 27 27 GLU D 1149 ASN D 1168 1 20 HELIX 28 28 SER D 1172 LEU D 1196 1 25 CISPEP 1 ASP A 1105 PRO A 1106 0 6.97 CISPEP 2 ASP B 1105 PRO B 1106 0 16.25 CISPEP 3 ASP C 1105 PRO C 1106 0 11.19 CISPEP 4 ASP D 1105 PRO D 1106 0 18.22 SITE 1 AC1 6 PRO A1110 VAL A1115 TYR A1125 ASN A1168 SITE 2 AC1 6 VAL A1174 HOH A1312 SITE 1 AC2 6 PRO B1110 VAL B1115 LEU B1120 ASN B1168 SITE 2 AC2 6 VAL B1174 HOH B1337 SITE 1 AC3 7 PRO C1110 VAL C1115 LEU C1120 ASN C1168 SITE 2 AC3 7 ARG C1173 VAL C1174 HOH C1306 SITE 1 AC4 6 PRO D1110 VAL D1115 LEU D1120 ASN D1168 SITE 2 AC4 6 VAL D1174 HOH D1308 CRYST1 36.150 55.680 69.080 90.21 104.03 108.61 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027663 0.009315 0.007764 0.00000 SCALE2 0.000000 0.018951 0.001677 0.00000 SCALE3 0.000000 0.000000 0.014979 0.00000