HEADER HYDROLASE 12-DEC-13 4NZJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-GALACTOSIDASE (BF1418) FROM TITLE 2 BACTEROIDES FRAGILIS NCTC 9343 AT 1.57 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ALPHA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 GENE: BF9343_1347, YP_211072.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THE CATALYTIC TIM BETA/ALPHA BARREL DOMAIN ACCOMPANIED BY N-TERMINAL KEYWDS 2 IG-LIKE DOMAIN AND C-TERMINAL BETA-SHEET DOMAIN, STRUCTURAL KEYWDS 3 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4NZJ 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4NZJ 1 JRNL REVDAT 2 22-NOV-17 4NZJ 1 REMARK REVDAT 1 25-DEC-13 4NZJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-GALACTOSIDASE (BF1418) JRNL TITL 2 FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.57 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3656 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.612 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3994 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3771 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5473 ; 1.099 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8732 ; 0.695 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ; 5.458 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;37.487 ;24.355 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 650 ;11.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;12.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4623 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 924 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1948 ; 1.224 ; 3.357 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 1.223 ; 3.353 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2451 ; 2.015 ; 6.274 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7350 33.4640 29.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0052 T22: 0.0268 REMARK 3 T33: 0.0083 T12: 0.0044 REMARK 3 T13: -0.0002 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.0202 L22: 0.9009 REMARK 3 L33: 0.7391 L12: -0.3905 REMARK 3 L13: -0.1376 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0309 S12: 0.0280 S13: -0.0348 REMARK 3 S21: -0.0526 S22: -0.0071 S23: 0.0342 REMARK 3 S31: -0.0230 S32: -0.0367 S33: -0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 360 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1310 20.9050 17.8670 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0515 REMARK 3 T33: 0.0418 T12: 0.0208 REMARK 3 T13: -0.0026 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.2289 L22: 2.0787 REMARK 3 L33: 1.1218 L12: -0.8610 REMARK 3 L13: -0.2052 L23: -0.6274 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: 0.2284 S13: -0.2109 REMARK 3 S21: -0.3119 S22: -0.1191 S23: -0.0444 REMARK 3 S31: 0.1451 S32: 0.0568 S33: -0.0213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. GLYCEROL (GOL) FROM THE CRYSTALLIZATION REMARK 3 SOLUTION IS MODELED. REMARK 4 REMARK 4 4NZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918401,0.979261,0.979152 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 29.386 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.94700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M MAGNESIUM ACETATE, 20.0% REMARK 280 GLYCEROL, 16.0% POLYETHYLENE GLYCOL 8000, 0.1M SODIUM CACODYLATE REMARK 280 PH 6.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.30700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.30700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.52550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.30700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.30700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.52550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.30700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.30700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.52550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.30700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.30700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.52550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 77.05100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 983 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1002 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 25 REMARK 465 ASP A 26 REMARK 465 SER A 354 REMARK 465 ILE A 355 REMARK 465 GLY A 356 REMARK 465 TYR A 357 REMARK 465 GLU A 358 REMARK 465 SER A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 70 CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 LYS A 91 NZ REMARK 470 LYS A 351 CD CE NZ REMARK 470 SER A 352 OG REMARK 470 MSE A 353 CG SE CE REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 LYS A 396 CE NZ REMARK 470 LYS A 474 CG CD CE NZ REMARK 470 LYS A 498 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 165 -148.35 -102.73 REMARK 500 TRP A 287 -16.31 -141.88 REMARK 500 ASP A 342 -178.20 79.99 REMARK 500 SER A 352 -172.46 60.22 REMARK 500 LEU A 381 79.89 -111.90 REMARK 500 ASN A 389 43.06 -140.92 REMARK 500 ASN A 389 41.65 -140.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419777 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-500 OF REMARK 999 THE TARGET SEQUENCE. DBREF 4NZJ A 25 500 UNP Q5LFG6 Q5LFG6_BACFN 25 500 SEQADV 4NZJ GLY A 0 UNP Q5LFG6 EXPRESSION TAG SEQRES 1 A 477 GLY GLY ASP VAL VAL LEU LYS VAL PHE GLU GLY LYS PRO SEQRES 2 A 477 ARG ILE ASN SER PRO HIS ILE ILE GLY ASN TYR PRO SER SEQRES 3 A 477 THR PRO PHE ILE PHE TYR ILE PRO THR SER GLY GLN ARG SEQRES 4 A 477 PRO MSE GLN TRP SER ALA GLU LYS LEU PRO GLU GLY LEU SEQRES 5 A 477 GLU LEU ASP SER LYS THR GLY ILE ILE SER GLY VAL MSE SEQRES 6 A 477 THR SER LYS GLY ASP TYR THR VAL THR LEU LYS ALA GLU SEQRES 7 A 477 ASN ALA LEU GLY VAL SER VAL LYS GLN LEU VAL ILE ARG SEQRES 8 A 477 ILE GLY ASP GLU LEU LEU LEU THR PRO PRO MSE GLY TRP SEQRES 9 A 477 ASN SER TRP ASN THR PHE GLY GLN HIS LEU THR GLU GLU SEQRES 10 A 477 LEU VAL LEU GLN THR ALA ASP ALA MSE ILE THR ASN GLY SEQRES 11 A 477 MSE ARG ASP LEU GLY TYR SER TYR ILE ASN ILE ASP ASP SEQRES 12 A 477 PHE TRP GLN LEU PRO GLU ARG GLY ALA ASP GLY HIS LEU SEQRES 13 A 477 GLN ILE ASP LYS THR LYS PHE PRO ARG GLY ILE LYS TYR SEQRES 14 A 477 VAL ALA ASP TYR LEU HIS GLU ARG GLY PHE LYS LEU GLY SEQRES 15 A 477 ILE TYR SER ASP ALA ALA GLU LYS THR CYS GLY GLY VAL SEQRES 16 A 477 CYS GLY SER TYR GLY TYR GLU GLU THR ASP ALA LYS ASP SEQRES 17 A 477 PHE ALA SER TRP GLY VAL ASP LEU LEU LYS TYR ASP TYR SEQRES 18 A 477 CYS ASN ALA PRO VAL ASP ARG VAL GLU ALA MSE GLU ARG SEQRES 19 A 477 TYR ALA LYS MSE GLY ARG ALA LEU ARG ALA THR ASN ARG SEQRES 20 A 477 SER ILE VAL TYR SER VAL CYS GLU TRP GLY GLN ARG GLU SEQRES 21 A 477 PRO TRP LYS TRP ALA LYS GLN VAL GLY GLY HIS LEU TRP SEQRES 22 A 477 ARG VAL SER GLY ASP ILE GLY ASP ILE TRP TYR ARG ASP SEQRES 23 A 477 GLY ASN ARG VAL GLY GLY LEU HIS GLY ILE LEU ASN ILE SEQRES 24 A 477 LEU GLU ILE ASN ALA PRO LEU SER GLU TYR ALA GLY PRO SEQRES 25 A 477 SER GLY TRP ASN ASP PRO ASP MSE LEU VAL VAL GLY ILE SEQRES 26 A 477 ASP GLY LYS SER MSE SER ILE GLY TYR GLU SER GLU GLY SEQRES 27 A 477 CYS THR GLN GLU GLN TYR LYS SER HIS PHE SER LEU TRP SEQRES 28 A 477 CYS MSE MSE ALA SER PRO LEU LEU SER GLY ASN ASP VAL SEQRES 29 A 477 ARG ASN MSE ASN ASP SER THR LEU LYS ILE LEU LEU ASP SEQRES 30 A 477 PRO ASP LEU ILE ALA ILE ASN GLN ASP VAL LEU GLY ARG SEQRES 31 A 477 GLN ALA GLU ARG SER ILE ARG SER ASP HIS TYR ASP ILE SEQRES 32 A 477 TRP VAL LYS PRO LEU ALA ASP GLY ARG LYS ALA VAL ALA SEQRES 33 A 477 CYS PHE ASN ARG ALA SER SER PRO GLN THR VAL ILE LEU SEQRES 34 A 477 ASN GLU ASN THR ILE ALA ASP LEU SER PHE GLU GLN ILE SEQRES 35 A 477 TYR CYS LEU ASP ASN HIS LEU THR LYS SER GLY SER ASP SEQRES 36 A 477 SER LYS GLU LEU ILE VAL LYS LEU ALA PRO TYR GLN CYS SEQRES 37 A 477 LYS VAL TYR ILE PHE GLY LYS THR ASP MODRES 4NZJ MSE A 64 MET SELENOMETHIONINE MODRES 4NZJ MSE A 88 MET SELENOMETHIONINE MODRES 4NZJ MSE A 125 MET SELENOMETHIONINE MODRES 4NZJ MSE A 149 MET SELENOMETHIONINE MODRES 4NZJ MSE A 154 MET SELENOMETHIONINE MODRES 4NZJ MSE A 255 MET SELENOMETHIONINE MODRES 4NZJ MSE A 261 MET SELENOMETHIONINE MODRES 4NZJ MSE A 343 MET SELENOMETHIONINE MODRES 4NZJ MSE A 353 MET SELENOMETHIONINE MODRES 4NZJ MSE A 376 MET SELENOMETHIONINE MODRES 4NZJ MSE A 377 MET SELENOMETHIONINE MODRES 4NZJ MSE A 390 MET SELENOMETHIONINE HET MSE A 64 13 HET MSE A 88 13 HET MSE A 125 8 HET MSE A 149 8 HET MSE A 154 8 HET MSE A 255 13 HET MSE A 261 8 HET MSE A 343 13 HET MSE A 353 5 HET MSE A 376 8 HET MSE A 377 8 HET MSE A 390 13 HET GOL A 600 12 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *480(H2 O) HELIX 1 1 SER A 129 GLY A 134 1 6 HELIX 2 2 GLN A 135 LEU A 137 5 3 HELIX 3 3 THR A 138 ASN A 152 1 15 HELIX 4 4 MSE A 154 GLY A 158 5 5 HELIX 5 5 ARG A 188 ARG A 200 1 13 HELIX 6 6 TYR A 224 GLY A 236 1 13 HELIX 7 7 ASP A 250 ALA A 267 1 18 HELIX 8 8 GLU A 283 TRP A 287 5 5 HELIX 9 9 ASP A 309 GLY A 314 1 6 HELIX 10 10 GLY A 318 ALA A 327 1 10 HELIX 11 11 PRO A 328 ALA A 333 5 6 HELIX 12 12 THR A 363 MSE A 377 1 15 HELIX 13 13 ASN A 391 LEU A 399 1 9 HELIX 14 14 ASP A 400 GLN A 408 1 9 SHEET 1 A 2 ARG A 37 ILE A 38 0 SHEET 2 A 2 THR A 58 SER A 59 -1 O SER A 59 N ARG A 37 SHEET 1 B 4 ILE A 43 ASN A 46 0 SHEET 2 B 4 GLY A 105 ILE A 115 1 O ARG A 114 N ILE A 44 SHEET 3 B 4 GLY A 92 ASN A 102 -1 N VAL A 96 O LEU A 111 SHEET 4 B 4 GLN A 65 GLU A 69 -1 N GLN A 65 O GLU A 101 SHEET 1 C 3 PRO A 51 TYR A 55 0 SHEET 2 C 3 ILE A 83 VAL A 87 -1 O ILE A 84 N PHE A 54 SHEET 3 C 3 LEU A 75 ASP A 78 -1 N GLU A 76 O SER A 85 SHEET 1 D 8 TRP A 338 ASP A 340 0 SHEET 2 D 8 LEU A 295 ARG A 297 1 N TRP A 296 O ASP A 340 SHEET 3 D 8 VAL A 273 CYS A 277 1 N VAL A 276 O LEU A 295 SHEET 4 D 8 LEU A 239 ASP A 243 1 N LEU A 240 O SER A 275 SHEET 5 D 8 LYS A 203 ASP A 209 1 N SER A 208 O ASP A 243 SHEET 6 D 8 TYR A 161 ASN A 163 1 N ILE A 162 O LYS A 203 SHEET 7 D 8 MSE A 125 ASN A 128 1 N TRP A 127 O ASN A 163 SHEET 8 D 8 LEU A 381 SER A 383 1 O SER A 383 N GLY A 126 SHEET 1 E 6 GLU A 416 ARG A 420 0 SHEET 2 E 6 TYR A 424 PRO A 430 -1 O VAL A 428 N GLU A 416 SHEET 3 E 6 LYS A 436 ASN A 442 -1 O ALA A 437 N LYS A 429 SHEET 4 E 6 CYS A 491 PHE A 496 -1 O TYR A 494 N VAL A 438 SHEET 5 E 6 GLN A 464 CYS A 467 -1 N TYR A 466 O ILE A 495 SHEET 6 E 6 LEU A 472 SER A 475 -1 O LEU A 472 N CYS A 467 SHEET 1 F 2 GLN A 448 ASN A 453 0 SHEET 2 F 2 GLU A 481 LEU A 486 -1 O VAL A 484 N VAL A 450 SSBOND 1 CYS A 215 CYS A 245 1555 1555 2.02 LINK C PRO A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N GLN A 65 1555 1555 1.33 LINK C VAL A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N THR A 89 1555 1555 1.33 LINK C PRO A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N GLY A 126 1555 1555 1.33 LINK C ALA A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ILE A 150 1555 1555 1.33 LINK C GLY A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N ARG A 155 1555 1555 1.32 LINK C ALA A 254 N MSE A 255 1555 1555 1.33 LINK C MSE A 255 N GLU A 256 1555 1555 1.34 LINK C LYS A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N GLY A 262 1555 1555 1.33 LINK C ASP A 342 N MSE A 343 1555 1555 1.33 LINK C MSE A 343 N LEU A 344 1555 1555 1.33 LINK C SER A 352 N MSE A 353 1555 1555 1.33 LINK C CYS A 375 N MSE A 376 1555 1555 1.33 LINK C MSE A 376 N MSE A 377 1555 1555 1.33 LINK C MSE A 377 N ALA A 378 1555 1555 1.34 LINK C ASN A 389 N MSE A 390 1555 1555 1.33 LINK C MSE A 390 N ASN A 391 1555 1555 1.33 CISPEP 1 SER A 40 PRO A 41 0 4.13 CISPEP 2 ARG A 62 PRO A 63 0 2.83 SITE 1 AC1 12 TRP A 130 ASP A 165 ASP A 166 TYR A 207 SITE 2 AC1 12 CYS A 215 GLY A 216 LYS A 241 ASP A 243 SITE 3 AC1 12 HOH A 706 HOH A 927 HOH A1096 HOH A1097 CRYST1 114.614 114.614 77.051 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012978 0.00000