HEADER HYDROLASE 13-DEC-13 4O0E TITLE CRYSTAL STRUCTURE OF THE HUMAN L-ASPARAGINASE PROTEIN T186V MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOASPARTYL PEPTIDASE/L-ASPARAGINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARAGINASE-LIKE PROTEIN 1, BETA-ASPARTYL-PEPTIDASE, COMPND 5 ISOASPARTYL DIPEPTIDASE, L-ASPARAGINE AMIDOHYDROLASE, ISOASPARTYL COMPND 6 PEPTIDASE/L-ASPARAGINASE ALPHA CHAIN, ISOASPARTYL PEPTIDASE/L- COMPND 7 ASPARAGINASE BETA CHAIN; COMPND 8 EC: 3.4.19.5, 3.5.1.1; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASRGL1, ALP, CRASH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS NTN ENZYME, HOMODIMER, ASPARAGINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NOMME,A.LAVIE REVDAT 4 20-SEP-23 4O0E 1 REMARK SEQADV LINK REVDAT 3 18-JUN-14 4O0E 1 JRNL REVDAT 2 11-JUN-14 4O0E 1 JRNL REVDAT 1 30-APR-14 4O0E 0 JRNL AUTH J.NOMME,Y.SU,A.LAVIE JRNL TITL ELUCIDATION OF THE SPECIFIC FUNCTION OF THE CONSERVED JRNL TITL 2 THREONINE TRIAD RESPONSIBLE FOR HUMAN L-ASPARAGINASE JRNL TITL 3 AUTOCLEAVAGE AND SUBSTRATE HYDROLYSIS. JRNL REF J.MOL.BIOL. V. 426 2471 2014 JRNL REFN ISSN 0022-2836 JRNL PMID 24768817 JRNL DOI 10.1016/J.JMB.2014.04.016 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 57400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3066 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4303 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 177 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.022 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.113 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4411 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4280 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5980 ; 1.603 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9880 ; 0.886 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 6.970 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;39.008 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 734 ;17.986 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ; 9.639 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 691 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5080 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2388 ; 1.498 ; 2.571 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2387 ; 1.498 ; 2.571 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2982 ; 2.092 ; 3.855 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2983 ; 2.092 ; 3.856 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2023 ; 1.402 ; 2.756 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2024 ; 1.402 ; 2.756 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2991 ; 1.993 ; 4.076 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5174 ; 3.174 ;20.827 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5153 ; 3.148 ;20.810 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.513 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.487 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000083883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0782 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.710 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 5.280 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 14.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55900 REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2-2.5 M SODIUM MALONATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 198.88133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.44067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.16100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.72033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 248.60167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 154 REMARK 465 LYS A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLN A 158 REMARK 465 LYS A 159 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 CYS A 162 REMARK 465 GLN A 163 REMARK 465 LYS A 164 REMARK 465 ASN A 165 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 GLY B 156 REMARK 465 ALA B 157 REMARK 465 GLN B 158 REMARK 465 LYS B 159 REMARK 465 THR B 160 REMARK 465 ASP B 161 REMARK 465 CYS B 162 REMARK 465 GLN B 163 REMARK 465 LYS B 164 REMARK 465 ASN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LEU B 166 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 35 O HOH A 577 1.92 REMARK 500 O HOH B 524 O HOH B 565 2.04 REMARK 500 OG1 THR B 281 O HOH B 551 2.15 REMARK 500 CG2 THR B 184 O HOH B 565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 46 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -158.92 -153.95 REMARK 500 ASP A 119 -99.14 29.22 REMARK 500 ALA A 126 -70.23 -59.39 REMARK 500 ALA A 127 -43.36 -29.55 REMARK 500 ALA A 205 -73.47 -94.81 REMARK 500 ILE A 213 -60.52 -148.24 REMARK 500 HIS A 221 99.65 -52.59 REMARK 500 GLN A 240 3.30 -51.84 REMARK 500 ILE A 297 -48.07 -131.08 REMARK 500 ASP A 300 -24.70 75.80 REMARK 500 ASP A 301 -7.08 -57.01 REMARK 500 ASN B 62 72.45 -67.25 REMARK 500 ALA B 63 147.76 -175.73 REMARK 500 ASN B 70 -164.31 -74.11 REMARK 500 LEU B 87 12.04 56.35 REMARK 500 ASP B 119 -119.28 35.13 REMARK 500 ALA B 205 -79.37 -81.62 REMARK 500 ILE B 213 -65.16 -121.09 REMARK 500 THR B 219 -6.16 -149.16 REMARK 500 ASN B 229 59.70 38.30 REMARK 500 GLU B 239 -34.30 -39.46 REMARK 500 MET B 283 103.16 -165.04 REMARK 500 ILE B 297 -57.23 -146.51 REMARK 500 ASP B 300 59.34 34.95 REMARK 500 ASP B 301 44.94 -144.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 55 O REMARK 620 2 GLU A 56 O 77.9 REMARK 620 3 ASP A 58 O 80.3 103.3 REMARK 620 4 PHE A 61 O 111.6 154.6 101.5 REMARK 620 5 ALA A 63 O 97.2 69.7 173.0 85.5 REMARK 620 6 CYS A 65 O 149.0 71.9 99.5 99.0 79.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 55 O REMARK 620 2 GLU B 56 O 79.8 REMARK 620 3 ASP B 58 O 81.8 106.3 REMARK 620 4 PHE B 61 O 111.9 157.4 94.8 REMARK 620 5 ALA B 63 O 107.4 77.4 170.7 80.6 REMARK 620 6 CYS B 65 O 160.3 86.2 88.9 86.1 82.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O0C RELATED DB: PDB REMARK 900 RELATED ID: 4O0D RELATED DB: PDB REMARK 900 RELATED ID: 4O0F RELATED DB: PDB REMARK 900 RELATED ID: 4O0G RELATED DB: PDB REMARK 900 RELATED ID: 4O0H RELATED DB: PDB DBREF 4O0E A 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 DBREF 4O0E B 1 308 UNP Q7L266 ASGL1_HUMAN 1 308 SEQADV 4O0E HIS A 0 UNP Q7L266 EXPRESSION TAG SEQADV 4O0E VAL A 186 UNP Q7L266 THR 186 ENGINEERED MUTATION SEQADV 4O0E HIS B 0 UNP Q7L266 EXPRESSION TAG SEQADV 4O0E VAL B 186 UNP Q7L266 THR 186 ENGINEERED MUTATION SEQRES 1 A 309 HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA SEQRES 2 A 309 GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN SEQRES 3 A 309 GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU SEQRES 4 A 309 ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA SEQRES 5 A 309 VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY SEQRES 6 A 309 CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET SEQRES 7 A 309 ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY SEQRES 8 A 309 ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS SEQRES 9 A 309 LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE SEQRES 10 A 309 LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET SEQRES 11 A 309 GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU SEQRES 12 A 309 ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS SEQRES 13 A 309 GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY THR SEQRES 14 A 309 VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL ALA SEQRES 15 A 309 TYR ALA THR SER VAL GLY GLY ILE VAL ASN LYS MET VAL SEQRES 16 A 309 GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY GLY SEQRES 17 A 309 TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR THR GLY SEQRES 18 A 309 HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG LEU SEQRES 19 A 309 THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU GLU SEQRES 20 A 309 ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG VAL SEQRES 21 A 309 LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR GLY SEQRES 22 A 309 ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO TRP SEQRES 23 A 309 ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE ASP SEQRES 24 A 309 PRO ASP ASP THR THR ILE THR ASP LEU PRO SEQRES 1 B 309 HIS MET ASN PRO ILE VAL VAL VAL HIS GLY GLY GLY ALA SEQRES 2 B 309 GLY PRO ILE SER LYS ASP ARG LYS GLU ARG VAL HIS GLN SEQRES 3 B 309 GLY MET VAL ARG ALA ALA THR VAL GLY TYR GLY ILE LEU SEQRES 4 B 309 ARG GLU GLY GLY SER ALA VAL ASP ALA VAL GLU GLY ALA SEQRES 5 B 309 VAL VAL ALA LEU GLU ASP ASP PRO GLU PHE ASN ALA GLY SEQRES 6 B 309 CYS GLY SER VAL LEU ASN THR ASN GLY GLU VAL GLU MET SEQRES 7 B 309 ASP ALA SER ILE MET ASP GLY LYS ASP LEU SER ALA GLY SEQRES 8 B 309 ALA VAL SER ALA VAL GLN CYS ILE ALA ASN PRO ILE LYS SEQRES 9 B 309 LEU ALA ARG LEU VAL MET GLU LYS THR PRO HIS CYS PHE SEQRES 10 B 309 LEU THR ASP GLN GLY ALA ALA GLN PHE ALA ALA ALA MET SEQRES 11 B 309 GLY VAL PRO GLU ILE PRO GLY GLU LYS LEU VAL THR GLU SEQRES 12 B 309 ARG ASN LYS LYS ARG LEU GLU LYS GLU LYS HIS GLU LYS SEQRES 13 B 309 GLY ALA GLN LYS THR ASP CYS GLN LYS ASN LEU GLY THR SEQRES 14 B 309 VAL GLY ALA VAL ALA LEU ASP CYS LYS GLY ASN VAL ALA SEQRES 15 B 309 TYR ALA THR SER VAL GLY GLY ILE VAL ASN LYS MET VAL SEQRES 16 B 309 GLY ARG VAL GLY ASP SER PRO CYS LEU GLY ALA GLY GLY SEQRES 17 B 309 TYR ALA ASP ASN ASP ILE GLY ALA VAL SER THR THR GLY SEQRES 18 B 309 HIS GLY GLU SER ILE LEU LYS VAL ASN LEU ALA ARG LEU SEQRES 19 B 309 THR LEU PHE HIS ILE GLU GLN GLY LYS THR VAL GLU GLU SEQRES 20 B 309 ALA ALA ASP LEU SER LEU GLY TYR MET LYS SER ARG VAL SEQRES 21 B 309 LYS GLY LEU GLY GLY LEU ILE VAL VAL SER LYS THR GLY SEQRES 22 B 309 ASP TRP VAL ALA LYS TRP THR SER THR SER MET PRO TRP SEQRES 23 B 309 ALA ALA ALA LYS ASP GLY LYS LEU HIS PHE GLY ILE ASP SEQRES 24 B 309 PRO ASP ASP THR THR ILE THR ASP LEU PRO HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *177(H2 O) HELIX 1 1 SER A 16 ARG A 39 1 24 HELIX 2 2 SER A 43 ASP A 58 1 16 HELIX 3 3 ASN A 100 THR A 112 1 13 HELIX 4 4 ASP A 119 MET A 129 1 11 HELIX 5 5 THR A 141 HIS A 153 1 13 HELIX 6 6 HIS A 221 ASN A 229 1 9 HELIX 7 7 ASN A 229 GLN A 240 1 12 HELIX 8 8 THR A 243 LYS A 260 1 18 HELIX 9 9 SER B 16 GLU B 40 1 25 HELIX 10 10 SER B 43 ASP B 58 1 16 HELIX 11 11 ASN B 100 THR B 112 1 13 HELIX 12 12 ASP B 119 MET B 129 1 11 HELIX 13 13 PRO B 135 VAL B 140 1 6 HELIX 14 14 ARG B 143 LYS B 152 1 10 HELIX 15 15 HIS B 221 VAL B 228 1 8 HELIX 16 16 ASN B 229 GLN B 240 1 12 HELIX 17 17 THR B 243 LYS B 260 1 18 SHEET 1 A 9 PHE A 116 THR A 118 0 SHEET 2 A 9 ALA A 89 VAL A 95 1 N ALA A 91 O LEU A 117 SHEET 3 A 9 MET A 77 ASP A 83 -1 N MET A 77 O VAL A 95 SHEET 4 A 9 VAL A 180 VAL A 186 -1 O THR A 184 N SER A 80 SHEET 5 A 9 VAL A 169 LEU A 174 -1 N ALA A 171 O ALA A 183 SHEET 6 A 9 ILE A 4 HIS A 8 -1 N HIS A 8 O GLY A 170 SHEET 7 A 9 TRP A 285 LYS A 289 -1 O ALA A 286 N VAL A 7 SHEET 8 A 9 LYS A 292 GLY A 296 -1 O GLY A 296 N TRP A 285 SHEET 9 A 9 THR A 303 ASP A 306 -1 O THR A 305 N LEU A 293 SHEET 1 B 4 GLY A 207 ASP A 210 0 SHEET 2 B 4 GLY A 214 GLY A 220 -1 O VAL A 216 N TYR A 208 SHEET 3 B 4 GLY A 263 SER A 269 -1 O GLY A 264 N THR A 219 SHEET 4 B 4 TRP A 274 TRP A 278 -1 O LYS A 277 N LEU A 265 SHEET 1 C 9 LEU B 117 THR B 118 0 SHEET 2 C 9 ALA B 89 VAL B 95 1 N ALA B 91 O LEU B 117 SHEET 3 C 9 MET B 77 ASP B 83 -1 N MET B 77 O VAL B 95 SHEET 4 C 9 VAL B 180 VAL B 186 -1 O THR B 184 N SER B 80 SHEET 5 C 9 VAL B 169 LEU B 174 -1 N VAL B 169 O SER B 185 SHEET 6 C 9 ILE B 4 HIS B 8 -1 N VAL B 6 O VAL B 172 SHEET 7 C 9 TRP B 285 LYS B 289 -1 O ALA B 286 N VAL B 7 SHEET 8 C 9 LYS B 292 GLY B 296 -1 O HIS B 294 N ALA B 287 SHEET 9 C 9 THR B 303 ASP B 306 -1 O THR B 305 N LEU B 293 SHEET 1 D 4 GLY B 207 ASP B 210 0 SHEET 2 D 4 GLY B 214 THR B 218 -1 O GLY B 214 N ASP B 210 SHEET 3 D 4 GLY B 264 SER B 269 -1 O VAL B 268 N ALA B 215 SHEET 4 D 4 TRP B 274 TRP B 278 -1 O LYS B 277 N LEU B 265 LINK O LEU A 55 NA NA A 401 1555 1555 2.64 LINK O GLU A 56 NA NA A 401 1555 1555 2.81 LINK O ASP A 58 NA NA A 401 1555 1555 2.13 LINK O PHE A 61 NA NA A 401 1555 1555 2.39 LINK O ALA A 63 NA NA A 401 1555 1555 2.69 LINK O CYS A 65 NA NA A 401 1555 1555 2.27 LINK O LEU B 55 NA NA B 401 1555 1555 2.63 LINK O GLU B 56 NA NA B 401 1555 1555 2.76 LINK O ASP B 58 NA NA B 401 1555 1555 2.40 LINK O PHE B 61 NA NA B 401 1555 1555 2.80 LINK O ALA B 63 NA NA B 401 1555 1555 2.12 LINK O CYS B 65 NA NA B 401 1555 1555 2.30 SITE 1 AC1 6 LEU A 55 GLU A 56 ASP A 58 PHE A 61 SITE 2 AC1 6 ALA A 63 CYS A 65 SITE 1 AC2 6 LEU B 55 GLU B 56 ASP B 58 PHE B 61 SITE 2 AC2 6 ALA B 63 CYS B 65 CRYST1 59.378 59.378 298.322 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016841 0.009723 0.000000 0.00000 SCALE2 0.000000 0.019447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003352 0.00000