HEADER LYASE 13-DEC-13 4O0K TITLE CRYSTAL STRUCTURE OF 1-PYRROLINE-4-HYDROXY-2-CARBOXYLATE DEAMINASE TITLE 2 FROM BRUCELLA MELITENSIS WITH COVALENTLY BOUND SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDRODIPICOLINATE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.4.22; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS; SOURCE 3 ORGANISM_TAXID: 546272; SOURCE 4 STRAIN: BIOTYPE 2 (STRAIN ATCC 23457); SOURCE 5 GENE: BMEA_B0240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BRMEB.01563.A.B1 KEYWDS SSGCID, BRUCELLA MELITENSIS, PYRUVATE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 29-NOV-23 4O0K 1 REMARK REVDAT 3 20-SEP-23 4O0K 1 REMARK SEQADV LINK REVDAT 2 22-NOV-17 4O0K 1 REMARK REVDAT 1 15-JAN-14 4O0K 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,D.FOX III,D.LORIMER,T.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF 1-PYRROLINE-4-HYDROXY-2-CARBOXYLATE JRNL TITL 2 DEAMINASE FROM BRUCELLA MELITENSIS WITH COVALENTLY BOUND JRNL TITL 3 SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.203 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2625 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2507 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3579 ; 1.683 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5769 ; 0.872 ; 2.998 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 5.660 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;33.056 ;23.565 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;12.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.976 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3042 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 615 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1330 ; 0.978 ; 1.222 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1329 ; 0.965 ; 1.220 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1664 ; 1.527 ; 1.825 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 320 REMARK 3 RESIDUE RANGE : A 400 A 401 REMARK 3 RESIDUE RANGE : A 501 A 907 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5840 31.3210 12.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.0305 REMARK 3 T33: 0.0148 T12: -0.0002 REMARK 3 T13: 0.0177 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.2546 L22: 0.5651 REMARK 3 L33: 0.4623 L12: 0.0424 REMARK 3 L13: -0.0357 L23: -0.3457 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0002 S13: -0.0258 REMARK 3 S21: -0.0125 S22: -0.0256 S23: -0.0265 REMARK 3 S31: 0.0502 S32: 0.0005 S33: 0.0429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4O0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54188 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4MPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALDBIO MCSG1 SCREEN, A11: 10% PEG REMARK 280 4000, 200MM MGCL2, 100MM MES/NAOH; CRYSTALS SOAKED OVER NIGHT REMARK 280 WITH 20MM PYRUVATE; CRYO 20% EG; BRMEB.01563.A.B1.PS01874 AT REMARK 280 19.3MG/ML, TRAY 247709A11, PUCK AMW3-4, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.62500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.62500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.62500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 62.62500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 62.62500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 47.64000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 82.51490 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -47.64000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 82.51490 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 47.64000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 82.51490 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 62.62500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 62.62500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -47.64000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 82.51490 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 62.62500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 0 CG SD CE REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 288 O HOH A 823 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 136 CB TYR A 136 CG 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 136 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 108 -32.22 73.74 REMARK 500 ILE A 179 -53.81 -120.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 163 13.05 REMARK 500 KPI A 164 11.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MPQ RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: SSGCID-BRMEB.01563.A RELATED DB: TARGETTRACK DBREF 4O0K A 2 320 UNP C0RKH4 C0RKH4_BRUMB 2 320 SEQADV 4O0K MET A -8 UNP C0RKH4 INITIATING METHIONINE SEQADV 4O0K ALA A -7 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -6 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -5 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -4 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -3 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -2 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K HIS A -1 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K MET A 0 UNP C0RKH4 EXPRESSION TAG SEQADV 4O0K LEU A 1 UNP C0RKH4 EXPRESSION TAG SEQRES 1 A 329 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS ALA GLU SEQRES 2 A 329 ILE PHE SER GLY VAL ILE PRO ALA LEU MET THR PRO CYS SEQRES 3 A 329 LYS PRO ASP ARG SER PRO ASP PHE ASP ALA LEU VAL ARG SEQRES 4 A 329 LYS GLY GLN GLU LEU ILE GLY ASP GLY MET SER ALA VAL SEQRES 5 A 329 VAL TYR CYS GLY SER MET GLY ASP TRP PRO LEU LEU THR SEQRES 6 A 329 ASP ALA GLN ARG MET GLU GLY VAL GLU ARG LEU VAL LYS SEQRES 7 A 329 ALA GLY ILE PRO VAL ILE VAL GLY THR GLY ALA VAL ASN SEQRES 8 A 329 THR ALA SER ALA VAL ALA HIS ALA ALA HIS ALA GLN LYS SEQRES 9 A 329 VAL GLY ALA LYS GLY LEU MET VAL ILE PRO ARG VAL LEU SEQRES 10 A 329 SER ARG GLY SER ALA ILE ALA ALA GLN LYS ALA TYR PHE SEQRES 11 A 329 LYS ALA ILE LEU SER ALA ALA PRO ASP LEU PRO ALA VAL SEQRES 12 A 329 ILE TYR ASN SER PRO TYR TYR GLY PHE ALA THR ARG ALA SEQRES 13 A 329 ASP LEU PHE PHE ASP LEU ARG ALA GLU HIS PRO ASN LEU SEQRES 14 A 329 VAL GLY PHE KPI GLU PHE GLY GLY PRO ALA ASP MET ARG SEQRES 15 A 329 TYR ALA ALA GLU ASN ILE THR SER ARG ASP ASP GLY VAL SEQRES 16 A 329 SER LEU MET ILE GLY VAL ASP THR ALA VAL PHE HIS GLY SEQRES 17 A 329 PHE VAL ASN CYS GLY ALA THR GLY ALA ILE THR GLY ILE SEQRES 18 A 329 GLY ASN VAL LEU PRO LYS GLU VAL ILE HIS LEU CYS ASN SEQRES 19 A 329 LEU SER GLN ALA ALA ALA LEU GLY ASP VAL ASP ALA ARG SEQRES 20 A 329 GLN ARG ALA GLN GLU LEU GLU GLN ALA LEU ALA VAL LEU SEQRES 21 A 329 SER SER PHE ASP GLU GLY PRO ASP LEU VAL LEU TYR PHE SEQRES 22 A 329 LYS HIS MET MET VAL LEU LYS GLY ASP LYS GLU TYR THR SEQRES 23 A 329 LEU HIS PHE ASN GLU THR ASP ALA LEU SER GLU SER GLN SEQRES 24 A 329 ARG GLY TYR VAL GLU THR GLN PHE ARG LEU PHE ASN THR SEQRES 25 A 329 TRP TYR ALA GLU TRP SER LYS LEU PRO GLY ALA VAL GLN SEQRES 26 A 329 ARG CYS LYS ALA MODRES 4O0K KPI A 164 LYS HET KPI A 164 14 HET EDO A 400 4 HET EDO A 401 4 HETNAM KPI (2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE) HETNAM 2 KPI AMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 KPI C9 H16 N2 O4 FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *407(H2 O) HELIX 1 1 ALA A 3 SER A 7 5 5 HELIX 2 2 ASP A 24 ASP A 38 1 15 HELIX 3 3 GLY A 47 LEU A 55 5 9 HELIX 4 4 THR A 56 ALA A 70 1 15 HELIX 5 5 ASN A 82 GLY A 97 1 16 HELIX 6 6 ALA A 113 ALA A 128 1 16 HELIX 7 7 SER A 138 GLY A 142 5 5 HELIX 8 8 ARG A 146 HIS A 157 1 12 HELIX 9 9 GLY A 168 ILE A 179 1 12 HELIX 10 10 VAL A 192 THR A 194 5 3 HELIX 11 11 ALA A 195 GLY A 204 1 10 HELIX 12 12 GLY A 211 VAL A 215 5 5 HELIX 13 13 LEU A 216 LEU A 232 1 17 HELIX 14 14 ASP A 234 LEU A 248 1 15 HELIX 15 15 LEU A 248 PHE A 254 1 7 HELIX 16 16 ASP A 255 GLY A 257 5 3 HELIX 17 17 ASP A 259 LYS A 271 1 13 HELIX 18 18 ASP A 273 THR A 277 5 5 HELIX 19 19 SER A 287 SER A 309 1 23 HELIX 20 20 LYS A 310 PRO A 312 5 3 HELIX 21 21 GLY A 313 CYS A 318 1 6 SHEET 1 A 8 GLY A 8 PRO A 11 0 SHEET 2 A 8 GLY A 207 THR A 210 1 O ALA A 208 N ILE A 10 SHEET 3 A 8 SER A 187 ILE A 190 1 N ILE A 190 O ILE A 209 SHEET 4 A 8 LEU A 160 GLU A 165 1 N PHE A 163 O MET A 189 SHEET 5 A 8 ALA A 133 ASN A 137 1 N ILE A 135 O KPI A 164 SHEET 6 A 8 GLY A 100 VAL A 103 1 N VAL A 103 O VAL A 134 SHEET 7 A 8 VAL A 74 GLY A 77 1 N VAL A 76 O MET A 102 SHEET 8 A 8 VAL A 43 TYR A 45 1 N VAL A 43 O ILE A 75 LINK C PHE A 163 N KPI A 164 1555 1555 1.26 LINK C KPI A 164 N GLU A 165 1555 1555 1.29 CISPEP 1 TYR A 45 CYS A 46 0 -8.24 SITE 1 AC1 8 ARG A 21 SER A 22 PRO A 23 LEU A 54 SITE 2 AC1 8 GLN A 59 HOH A 751 HOH A 804 HOH A 842 SITE 1 AC2 4 PRO A 129 ASP A 130 PRO A 132 ASN A 159 CRYST1 95.280 95.280 125.250 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010495 0.006060 0.000000 0.00000 SCALE2 0.000000 0.012119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007984 0.00000