HEADER TRANSFERASE 14-DEC-13 4O0Q TITLE APO STRUCTURE OF A METHYLTRANSFERASE COMPONENT INVOLVED IN O- TITLE 2 DEMETHYLATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPTEROATE SYNTHASE DHPS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-269; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE DCB-2; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2 / DSM 10664; SOURCE 5 GENE: DHAF_0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM BARREL, METHYLTRANSFERASE, THF/MTHF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SJUTS,M.S.DUNSTAN,K.FISHER,D.LEYS REVDAT 4 20-MAR-24 4O0Q 1 SOURCE SEQADV REVDAT 3 16-SEP-15 4O0Q 1 JRNL REVDAT 2 09-SEP-15 4O0Q 1 JRNL REVDAT 1 21-JAN-15 4O0Q 0 JRNL AUTH H.SJUTS,M.S.DUNSTAN,K.FISHER,D.LEYS JRNL TITL STRUCTURES OF THE METHYLTRANSFERASE COMPONENT OF JRNL TITL 2 DESULFITOBACTERIUM HAFNIENSE DCB-2 O-DEMETHYLASE SHED LIGHT JRNL TITL 3 ON METHYLTETRAHYDROFOLATE FORMATION JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 1900 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 26327380 JRNL DOI 10.1107/S1399004715013061 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2463 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.948 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4213 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 1.913 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6898 ; 1.086 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;36.351 ;25.491 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;13.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.095 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 688 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4689 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2730 ; 1.256 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1092 ; 0.385 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4407 ; 2.248 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1483 ; 3.760 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1323 ; 6.319 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O0Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : ACCEL FIXED EXIT DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 27.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH 7.5, 100MM SUCCINIC REMARK 280 ACID, 15%(V/V) PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.33500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 450 REMARK 450 SOURCE REMARK 450 OVEREXPRESSION IN E. COLI (DE3) BL21 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 GLU A 269 REMARK 465 GLY A 270 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 LYS B 268 REMARK 465 GLU B 269 REMARK 465 GLY B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 THR A 12 CG2 REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ARG A 253 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 336 O HOH A 463 1.63 REMARK 500 O HOH B 353 O HOH B 502 1.86 REMARK 500 O HOH B 434 O HOH B 496 1.86 REMARK 500 O LEU B 197 O HOH B 352 2.06 REMARK 500 O HOH B 312 O HOH B 472 2.10 REMARK 500 CD GLN B 84 O HOH B 380 2.12 REMARK 500 O HOH B 337 O HOH B 486 2.15 REMARK 500 CG GLN B 85 O HOH B 364 2.17 REMARK 500 O HOH A 337 O HOH A 452 2.18 REMARK 500 OE1 GLN B 142 O HOH B 433 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 399 O HOH B 477 3455 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 36 CB SER A 36 OG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 248 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP B 63 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 248 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 81.76 -63.42 REMARK 500 LEU A 163 73.91 57.40 REMARK 500 HIS A 251 21.97 45.63 REMARK 500 LEU B 163 75.17 57.68 REMARK 500 ASN B 262 27.47 45.07 REMARK 500 PRO B 266 123.66 -32.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O1F RELATED DB: PDB REMARK 900 RELATED ID: 4O1E RELATED DB: PDB DBREF 4O0Q A 3 270 UNP B8FW00 B8FW00_DESHD 2 269 DBREF 4O0Q B 3 270 UNP B8FW00 B8FW00_DESHD 2 269 SEQADV 4O0Q MET A -19 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY A -18 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER A -17 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER A -16 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -15 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -14 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -13 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -12 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -11 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A -10 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER A -9 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER A -8 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY A -7 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q LEU A -6 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q VAL A -5 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q PRO A -4 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q ARG A -3 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY A -2 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER A -1 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS A 0 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q MET A 1 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q LEU A 2 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q MET B -19 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY B -18 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER B -17 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER B -16 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -15 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -14 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -13 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -12 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -11 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B -10 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER B -9 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER B -8 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY B -7 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q LEU B -6 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q VAL B -5 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q PRO B -4 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q ARG B -3 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q GLY B -2 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q SER B -1 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q HIS B 0 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q MET B 1 UNP B8FW00 EXPRESSION TAG SEQADV 4O0Q LEU B 2 UNP B8FW00 EXPRESSION TAG SEQRES 1 A 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 290 LEU VAL PRO ARG GLY SER HIS MET LEU ILE ILE ILE GLY SEQRES 3 A 290 GLU LYS ILE ASN GLY THR ILE PRO SER VAL LYS LYS ALA SEQRES 4 A 290 ILE GLU ALA LYS ASP GLU LYS LEU ILE ARG ASP LEU ALA SEQRES 5 A 290 LEU ARG GLN SER GLU ALA GLY ALA ASP TYR ILE ASP VAL SEQRES 6 A 290 CYS ALA SER THR SER PRO GLU LEU GLU VAL GLU THR LEU SEQRES 7 A 290 GLN TRP LEU MET ASP ILE VAL GLN GLU ALA THR ASP THR SEQRES 8 A 290 PRO LEU CYS ILE ASP SER PRO ASN PRO ARG ALA ILE GLN SEQRES 9 A 290 GLN VAL LEU LEU TYR ALA LYS ARG PRO GLY LEU ILE ASN SEQRES 10 A 290 SER VAL SER LEU GLU GLY ASP LYS CYS GLU VAL ILE PHE SEQRES 11 A 290 PRO LEU ILE GLN GLY THR SER TRP GLN VAL ILE ALA LEU SEQRES 12 A 290 THR CYS ASP ASN SER GLY ILE PRO GLN ASP VAL GLN SER SEQRES 13 A 290 ARG VAL GLU ILE ALA GLN ALA LEU VAL GLU LYS ALA GLN SEQRES 14 A 290 SER TYR ASP ILE ALA GLN GLU ARG ILE HIS ILE ASP PRO SEQRES 15 A 290 LEU VAL ILE ALA LEU SER ALA ASP ASN GLY ALA LEU LEU SEQRES 16 A 290 LYS PHE ALA GLU ALA THR ARG GLN ILE LYS ALA ASN TYR SEQRES 17 A 290 PRO MET ILE ASN VAL THR SER GLY LEU SER ASN ILE SER SEQRES 18 A 290 PHE GLY MET PRO LEU ARG LYS VAL VAL ASN GLN ASN PHE SEQRES 19 A 290 LEU THR LEU ALA MET PHE ALA GLY MET ASP SER ALA ILE SEQRES 20 A 290 LEU ASP PRO LEU ASN ARG ASP LEU LEU ALA ALA LEU LEU SEQRES 21 A 290 ALA THR GLU ALA LEU LEU GLY ARG ASP LYS HIS CYS ARG SEQRES 22 A 290 ASN PHE ALA ASN ALA TYR ARG LYS ASN LYS ILE GLY PRO SEQRES 23 A 290 LEU LYS GLU GLY SEQRES 1 B 290 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 290 LEU VAL PRO ARG GLY SER HIS MET LEU ILE ILE ILE GLY SEQRES 3 B 290 GLU LYS ILE ASN GLY THR ILE PRO SER VAL LYS LYS ALA SEQRES 4 B 290 ILE GLU ALA LYS ASP GLU LYS LEU ILE ARG ASP LEU ALA SEQRES 5 B 290 LEU ARG GLN SER GLU ALA GLY ALA ASP TYR ILE ASP VAL SEQRES 6 B 290 CYS ALA SER THR SER PRO GLU LEU GLU VAL GLU THR LEU SEQRES 7 B 290 GLN TRP LEU MET ASP ILE VAL GLN GLU ALA THR ASP THR SEQRES 8 B 290 PRO LEU CYS ILE ASP SER PRO ASN PRO ARG ALA ILE GLN SEQRES 9 B 290 GLN VAL LEU LEU TYR ALA LYS ARG PRO GLY LEU ILE ASN SEQRES 10 B 290 SER VAL SER LEU GLU GLY ASP LYS CYS GLU VAL ILE PHE SEQRES 11 B 290 PRO LEU ILE GLN GLY THR SER TRP GLN VAL ILE ALA LEU SEQRES 12 B 290 THR CYS ASP ASN SER GLY ILE PRO GLN ASP VAL GLN SER SEQRES 13 B 290 ARG VAL GLU ILE ALA GLN ALA LEU VAL GLU LYS ALA GLN SEQRES 14 B 290 SER TYR ASP ILE ALA GLN GLU ARG ILE HIS ILE ASP PRO SEQRES 15 B 290 LEU VAL ILE ALA LEU SER ALA ASP ASN GLY ALA LEU LEU SEQRES 16 B 290 LYS PHE ALA GLU ALA THR ARG GLN ILE LYS ALA ASN TYR SEQRES 17 B 290 PRO MET ILE ASN VAL THR SER GLY LEU SER ASN ILE SER SEQRES 18 B 290 PHE GLY MET PRO LEU ARG LYS VAL VAL ASN GLN ASN PHE SEQRES 19 B 290 LEU THR LEU ALA MET PHE ALA GLY MET ASP SER ALA ILE SEQRES 20 B 290 LEU ASP PRO LEU ASN ARG ASP LEU LEU ALA ALA LEU LEU SEQRES 21 B 290 ALA THR GLU ALA LEU LEU GLY ARG ASP LYS HIS CYS ARG SEQRES 22 B 290 ASN PHE ALA ASN ALA TYR ARG LYS ASN LYS ILE GLY PRO SEQRES 23 B 290 LEU LYS GLU GLY FORMUL 3 HOH *413(H2 O) HELIX 1 1 ILE A 13 LYS A 23 1 11 HELIX 2 2 ASP A 24 ALA A 38 1 15 HELIX 3 3 SER A 50 THR A 69 1 20 HELIX 4 4 ASN A 79 LEU A 87 1 9 HELIX 5 5 LEU A 88 ALA A 90 5 3 HELIX 6 6 ASP A 104 GLN A 114 1 11 HELIX 7 7 ASP A 133 TYR A 151 1 19 HELIX 8 8 ALA A 154 GLU A 156 5 3 HELIX 9 9 GLY A 172 TYR A 188 1 17 HELIX 10 10 SER A 198 PHE A 202 5 5 HELIX 11 11 LEU A 206 ALA A 221 1 16 HELIX 12 12 ASN A 232 LEU A 246 1 15 HELIX 13 13 ASP A 249 HIS A 251 5 3 HELIX 14 14 CYS A 252 LYS A 261 1 10 HELIX 15 15 ILE B 13 LYS B 23 1 11 HELIX 16 16 ASP B 24 ALA B 38 1 15 HELIX 17 17 SER B 50 GLU B 52 5 3 HELIX 18 18 LEU B 53 THR B 69 1 17 HELIX 19 19 ASN B 79 LEU B 87 1 9 HELIX 20 20 LEU B 88 ALA B 90 5 3 HELIX 21 21 ASP B 104 GLN B 114 1 11 HELIX 22 22 ASP B 133 SER B 150 1 18 HELIX 23 23 ALA B 154 GLU B 156 5 3 HELIX 24 24 GLY B 172 TYR B 188 1 17 HELIX 25 25 SER B 198 PHE B 202 5 5 HELIX 26 26 LEU B 206 GLY B 222 1 17 HELIX 27 27 ASN B 232 LEU B 246 1 15 HELIX 28 28 ASP B 249 HIS B 251 5 3 HELIX 29 29 CYS B 252 LYS B 261 1 10 SHEET 1 A 9 ILE A 3 ASN A 10 0 SHEET 2 A 9 TYR A 42 CYS A 46 1 O TYR A 42 N GLY A 6 SHEET 3 A 9 LEU A 73 ASP A 76 1 O ASP A 76 N VAL A 45 SHEET 4 A 9 LEU A 95 VAL A 99 1 O ASN A 97 N ILE A 75 SHEET 5 A 9 GLN A 119 LEU A 123 1 O ILE A 121 N ILE A 96 SHEET 6 A 9 ILE A 158 ASP A 161 1 O HIS A 159 N ALA A 122 SHEET 7 A 9 ASN A 192 GLY A 196 1 O ASN A 192 N ILE A 160 SHEET 8 A 9 SER A 225 LEU A 228 1 O ILE A 227 N SER A 195 SHEET 9 A 9 ILE A 3 ASN A 10 1 N ILE A 5 O ALA A 226 SHEET 1 B 9 ILE B 3 GLY B 6 0 SHEET 2 B 9 TYR B 42 VAL B 45 1 O TYR B 42 N GLY B 6 SHEET 3 B 9 LEU B 73 ASP B 76 1 O ASP B 76 N VAL B 45 SHEET 4 B 9 LEU B 95 VAL B 99 1 O ASN B 97 N ILE B 75 SHEET 5 B 9 GLN B 119 LEU B 123 1 O ILE B 121 N ILE B 96 SHEET 6 B 9 ILE B 158 ASP B 161 1 O ASP B 161 N ALA B 122 SHEET 7 B 9 ASN B 192 GLY B 196 1 O ASN B 192 N ILE B 160 SHEET 8 B 9 SER B 225 LEU B 228 1 N SER B 225 O VAL B 193 SHEET 9 B 9 ILE B 3 GLY B 6 1 N ILE B 5 O ALA B 226 CISPEP 1 ASN A 97 SER A 98 0 11.98 CISPEP 2 ASN B 97 SER B 98 0 13.55 CRYST1 90.670 119.070 58.150 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017197 0.00000