data_4O0V # _entry.id 4O0V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4O0V RCSB RCSB083900 WWPDB D_1000083900 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4O0R . unspecified PDB 4O0T . unspecified PDB 4O0X . unspecified PDB 4O0Y . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4O0V _pdbx_database_status.recvd_initial_deposition_date 2013-12-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rouge, L.' 1 'Tam, C.' 2 'Wang, W.' 3 # _citation.id primary _citation.title 'Back Pocket Flexibility Provides Group II p21-Activated Kinase (PAK) Selectivity for Type I 1/2 Kinase Inhibitors.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 57 _citation.page_first 1033 _citation.page_last 1045 _citation.year 2014 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24432870 _citation.pdbx_database_id_DOI 10.1021/jm401768t # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Staben, S.T.' 1 primary 'Feng, J.A.' 2 primary 'Lyle, K.' 3 primary 'Belvin, M.' 4 primary 'Boggs, J.' 5 primary 'Burch, J.D.' 6 primary 'Chua, C.C.' 7 primary 'Cui, H.' 8 primary 'Dipasquale, A.G.' 9 primary 'Friedman, L.S.' 10 primary 'Heise, C.' 11 primary 'Koeppen, H.' 12 primary 'Kotey, A.' 13 primary 'Mintzer, R.' 14 primary 'Oh, A.' 15 primary 'Roberts, D.A.' 16 primary 'Rouge, L.' 17 primary 'Rudolph, J.' 18 primary 'Tam, C.' 19 primary 'Wang, W.' 20 primary 'Xiao, Y.' 21 primary 'Young, A.' 22 primary 'Zhang, Y.' 23 primary 'Hoeflich, K.P.' 24 # _cell.entry_id 4O0V _cell.length_a 65.473 _cell.length_b 65.473 _cell.length_c 180.532 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O0V _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase PAK 4' 33068.422 1 2.7.11.1 ? 'unp residues 300-591' ? 2 non-polymer syn '1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol' 406.481 1 ? ? ? ? 3 water nat water 18.015 10 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p21-activated kinase 4, PAK-4' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV VEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSD FGFCAQVSKEVPRRK(SEP)LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPR LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENV VEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSD FGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 GLU n 1 5 GLN n 1 6 PHE n 1 7 ARG n 1 8 ALA n 1 9 ALA n 1 10 LEU n 1 11 GLN n 1 12 LEU n 1 13 VAL n 1 14 VAL n 1 15 ASP n 1 16 PRO n 1 17 GLY n 1 18 ASP n 1 19 PRO n 1 20 ARG n 1 21 SER n 1 22 TYR n 1 23 LEU n 1 24 ASP n 1 25 ASN n 1 26 PHE n 1 27 ILE n 1 28 LYS n 1 29 ILE n 1 30 GLY n 1 31 GLU n 1 32 GLY n 1 33 SER n 1 34 THR n 1 35 GLY n 1 36 ILE n 1 37 VAL n 1 38 CYS n 1 39 ILE n 1 40 ALA n 1 41 THR n 1 42 VAL n 1 43 ARG n 1 44 SER n 1 45 SER n 1 46 GLY n 1 47 LYS n 1 48 LEU n 1 49 VAL n 1 50 ALA n 1 51 VAL n 1 52 LYS n 1 53 LYS n 1 54 MET n 1 55 ASP n 1 56 LEU n 1 57 ARG n 1 58 LYS n 1 59 GLN n 1 60 GLN n 1 61 ARG n 1 62 ARG n 1 63 GLU n 1 64 LEU n 1 65 LEU n 1 66 PHE n 1 67 ASN n 1 68 GLU n 1 69 VAL n 1 70 VAL n 1 71 ILE n 1 72 MET n 1 73 ARG n 1 74 ASP n 1 75 TYR n 1 76 GLN n 1 77 HIS n 1 78 GLU n 1 79 ASN n 1 80 VAL n 1 81 VAL n 1 82 GLU n 1 83 MET n 1 84 TYR n 1 85 ASN n 1 86 SER n 1 87 TYR n 1 88 LEU n 1 89 VAL n 1 90 GLY n 1 91 ASP n 1 92 GLU n 1 93 LEU n 1 94 TRP n 1 95 VAL n 1 96 VAL n 1 97 MET n 1 98 GLU n 1 99 PHE n 1 100 LEU n 1 101 GLU n 1 102 GLY n 1 103 GLY n 1 104 ALA n 1 105 LEU n 1 106 THR n 1 107 ASP n 1 108 ILE n 1 109 VAL n 1 110 THR n 1 111 HIS n 1 112 THR n 1 113 ARG n 1 114 MET n 1 115 ASN n 1 116 GLU n 1 117 GLU n 1 118 GLN n 1 119 ILE n 1 120 ALA n 1 121 ALA n 1 122 VAL n 1 123 CYS n 1 124 LEU n 1 125 ALA n 1 126 VAL n 1 127 LEU n 1 128 GLN n 1 129 ALA n 1 130 LEU n 1 131 SER n 1 132 VAL n 1 133 LEU n 1 134 HIS n 1 135 ALA n 1 136 GLN n 1 137 GLY n 1 138 VAL n 1 139 ILE n 1 140 HIS n 1 141 ARG n 1 142 ASP n 1 143 ILE n 1 144 LYS n 1 145 SER n 1 146 ASP n 1 147 SER n 1 148 ILE n 1 149 LEU n 1 150 LEU n 1 151 THR n 1 152 HIS n 1 153 ASP n 1 154 GLY n 1 155 ARG n 1 156 VAL n 1 157 LYS n 1 158 LEU n 1 159 SER n 1 160 ASP n 1 161 PHE n 1 162 GLY n 1 163 PHE n 1 164 CYS n 1 165 ALA n 1 166 GLN n 1 167 VAL n 1 168 SER n 1 169 LYS n 1 170 GLU n 1 171 VAL n 1 172 PRO n 1 173 ARG n 1 174 ARG n 1 175 LYS n 1 176 SEP n 1 177 LEU n 1 178 VAL n 1 179 GLY n 1 180 THR n 1 181 PRO n 1 182 TYR n 1 183 TRP n 1 184 MET n 1 185 ALA n 1 186 PRO n 1 187 GLU n 1 188 LEU n 1 189 ILE n 1 190 SER n 1 191 ARG n 1 192 LEU n 1 193 PRO n 1 194 TYR n 1 195 GLY n 1 196 PRO n 1 197 GLU n 1 198 VAL n 1 199 ASP n 1 200 ILE n 1 201 TRP n 1 202 SER n 1 203 LEU n 1 204 GLY n 1 205 ILE n 1 206 MET n 1 207 VAL n 1 208 ILE n 1 209 GLU n 1 210 MET n 1 211 VAL n 1 212 ASP n 1 213 GLY n 1 214 GLU n 1 215 PRO n 1 216 PRO n 1 217 TYR n 1 218 PHE n 1 219 ASN n 1 220 GLU n 1 221 PRO n 1 222 PRO n 1 223 LEU n 1 224 LYS n 1 225 ALA n 1 226 MET n 1 227 LYS n 1 228 MET n 1 229 ILE n 1 230 ARG n 1 231 ASP n 1 232 ASN n 1 233 LEU n 1 234 PRO n 1 235 PRO n 1 236 ARG n 1 237 LEU n 1 238 LYS n 1 239 ASN n 1 240 LEU n 1 241 HIS n 1 242 LYS n 1 243 VAL n 1 244 SER n 1 245 PRO n 1 246 SER n 1 247 LEU n 1 248 LYS n 1 249 GLY n 1 250 PHE n 1 251 LEU n 1 252 ASP n 1 253 ARG n 1 254 LEU n 1 255 LEU n 1 256 VAL n 1 257 ARG n 1 258 ASP n 1 259 PRO n 1 260 ALA n 1 261 GLN n 1 262 ARG n 1 263 ALA n 1 264 THR n 1 265 ALA n 1 266 ALA n 1 267 GLU n 1 268 LEU n 1 269 LEU n 1 270 LYS n 1 271 HIS n 1 272 PRO n 1 273 PHE n 1 274 LEU n 1 275 ALA n 1 276 LYS n 1 277 ALA n 1 278 GLY n 1 279 PRO n 1 280 PRO n 1 281 ALA n 1 282 SER n 1 283 ILE n 1 284 VAL n 1 285 PRO n 1 286 LEU n 1 287 MET n 1 288 ARG n 1 289 GLN n 1 290 ASN n 1 291 ARG n 1 292 THR n 1 293 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PAK4, KIAA1142' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PAK4_HUMAN _struct_ref.pdbx_db_accession O96013 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SHEQFRAALQLVVDPGDPRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVV EMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDF GFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLH KVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPPASIVPLMRQNRTR ; _struct_ref.pdbx_align_begin 300 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4O0V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 293 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O96013 _struct_ref_seq.db_align_beg 300 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 591 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 300 _struct_ref_seq.pdbx_auth_seq_align_end 591 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4O0V _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O96013 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 299 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2OL non-polymer . '1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol' ? 'C22 H26 N6 O2' 406.481 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SEP 'L-peptide linking' n PHOSPHOSERINE PHOSPHONOSERINE 'C3 H8 N O6 P' 185.072 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4O0V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_percent_sol 58.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.3 _exptl_crystal_grow.pdbx_details ;500 uL of 0.2 M Tri-Potassium citrate and 20% PEG3350 in the reservoir, and drops set up by mixing 1.0 uL of reservoir solution and 1.0 uL of protein, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 93 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-11-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Liquid Nitrogen cooled Dual Crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 4O0V _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.80 _reflns.number_obs 9235 _reflns.number_all 10316 _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.90 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4O0V _refine.ls_number_reflns_obs 9782 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.845 _refine.ls_d_res_high 2.800 _refine.ls_percent_reflns_obs 96.18 _refine.ls_R_factor_obs 0.2038 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2014 _refine.ls_R_factor_R_free 0.2531 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.74 _refine.ls_number_reflns_R_free 470 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 9.3629 _refine.aniso_B[2][2] 9.3629 _refine.aniso_B[3][3] -27.3105 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.312 _refine.solvent_model_param_bsol 53.023 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.48 _refine.pdbx_overall_phase_error 25.55 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2293 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 2333 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 44.845 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.003 ? ? 2375 ? 'X-RAY DIFFRACTION' f_angle_d 0.753 ? ? 3221 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 11.605 ? ? 902 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.054 ? ? 360 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 413 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.8004 3.2055 3062 0.2886 97.00 0.3573 . . 169 . . . . 'X-RAY DIFFRACTION' . 3.2055 4.0382 3137 0.1995 97.00 0.2718 . . 157 . . . . 'X-RAY DIFFRACTION' . 4.0382 44.8510 3253 0.1853 95.00 0.2203 . . 144 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4O0V _struct.title 'Back pocket flexibility provides group-II PAK selectivity for type 1 kinase inhibitors' _struct.pdbx_descriptor 'Serine/threonine-protein kinase PAK 4 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O0V _struct_keywords.pdbx_keywords 'transferase/transferase inhibitor' _struct_keywords.text 'PAK4, transferase-transferase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? GLN A 11 ? GLY A 299 GLN A 309 1 ? 11 HELX_P HELX_P2 2 ASP A 18 ? SER A 21 ? ASP A 316 SER A 319 5 ? 4 HELX_P HELX_P3 3 ARG A 57 ? GLN A 59 ? ARG A 355 GLN A 357 5 ? 3 HELX_P HELX_P4 4 ARG A 62 ? ARG A 73 ? ARG A 360 ARG A 371 1 ? 12 HELX_P HELX_P5 5 LEU A 105 ? THR A 110 ? LEU A 403 THR A 408 1 ? 6 HELX_P HELX_P6 6 ASN A 115 ? GLN A 136 ? ASN A 413 GLN A 434 1 ? 22 HELX_P HELX_P7 7 LYS A 144 ? ASP A 146 ? LYS A 442 ASP A 444 5 ? 3 HELX_P HELX_P8 8 THR A 180 ? MET A 184 ? THR A 478 MET A 482 5 ? 5 HELX_P HELX_P9 9 ALA A 185 ? SER A 190 ? ALA A 483 SER A 488 1 ? 6 HELX_P HELX_P10 10 PRO A 196 ? GLY A 213 ? PRO A 494 GLY A 511 1 ? 18 HELX_P HELX_P11 11 PRO A 221 ? ASN A 232 ? PRO A 519 ASN A 530 1 ? 12 HELX_P HELX_P12 12 ASN A 239 ? VAL A 243 ? ASN A 537 VAL A 541 5 ? 5 HELX_P HELX_P13 13 SER A 244 ? ASP A 252 ? SER A 542 ASP A 550 1 ? 9 HELX_P HELX_P14 14 THR A 264 ? LEU A 269 ? THR A 562 LEU A 567 1 ? 6 HELX_P HELX_P15 15 LYS A 270 ? ALA A 277 ? LYS A 568 ALA A 575 5 ? 8 HELX_P HELX_P16 16 PRO A 279 ? MET A 287 ? PRO A 577 MET A 585 5 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LYS 175 C ? ? ? 1_555 A SEP 176 N ? ? A LYS 473 A SEP 474 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A SEP 176 C ? ? ? 1_555 A LEU 177 N ? ? A SEP 474 A LEU 475 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 23 ? GLY A 30 ? LEU A 321 GLY A 328 A 2 ILE A 36 ? VAL A 42 ? ILE A 334 VAL A 340 A 3 LEU A 48 ? ASP A 55 ? LEU A 346 ASP A 353 A 4 GLU A 92 ? GLU A 98 ? GLU A 390 GLU A 396 A 5 MET A 83 ? VAL A 89 ? MET A 381 VAL A 387 B 1 GLY A 103 ? ALA A 104 ? GLY A 401 ALA A 402 B 2 ILE A 148 ? LEU A 150 ? ILE A 446 LEU A 448 B 3 VAL A 156 ? LEU A 158 ? VAL A 454 LEU A 456 C 1 VAL A 138 ? ILE A 139 ? VAL A 436 ILE A 437 C 2 ALA A 165 ? GLN A 166 ? ALA A 463 GLN A 464 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 24 ? N ASP A 322 O THR A 41 ? O THR A 339 A 2 3 N CYS A 38 ? N CYS A 336 O VAL A 51 ? O VAL A 349 A 3 4 N ALA A 50 ? N ALA A 348 O MET A 97 ? O MET A 395 A 4 5 O TRP A 94 ? O TRP A 392 N TYR A 87 ? N TYR A 385 B 1 2 N GLY A 103 ? N GLY A 401 O LEU A 150 ? O LEU A 448 B 2 3 N LEU A 149 ? N LEU A 447 O LYS A 157 ? O LYS A 455 C 1 2 N ILE A 139 ? N ILE A 437 O ALA A 165 ? O ALA A 463 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 2OL A 601' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 ILE A 29 ? ILE A 327 . ? 1_555 ? 2 AC1 14 VAL A 37 ? VAL A 335 . ? 1_555 ? 3 AC1 14 ALA A 50 ? ALA A 348 . ? 1_555 ? 4 AC1 14 LYS A 52 ? LYS A 350 . ? 1_555 ? 5 AC1 14 GLU A 68 ? GLU A 366 . ? 1_555 ? 6 AC1 14 VAL A 81 ? VAL A 379 . ? 1_555 ? 7 AC1 14 GLU A 98 ? GLU A 396 . ? 1_555 ? 8 AC1 14 LEU A 100 ? LEU A 398 . ? 1_555 ? 9 AC1 14 GLY A 103 ? GLY A 401 . ? 1_555 ? 10 AC1 14 ALA A 104 ? ALA A 402 . ? 1_555 ? 11 AC1 14 LEU A 149 ? LEU A 447 . ? 1_555 ? 12 AC1 14 SER A 159 ? SER A 457 . ? 1_555 ? 13 AC1 14 ASP A 160 ? ASP A 458 . ? 1_555 ? 14 AC1 14 PHE A 161 ? PHE A 459 . ? 1_555 ? # _database_PDB_matrix.entry_id 4O0V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4O0V _atom_sites.fract_transf_matrix[1][1] 0.015273 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015273 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005539 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 299 299 GLY GLY A . n A 1 2 SER 2 300 300 SER SER A . n A 1 3 HIS 3 301 301 HIS HIS A . n A 1 4 GLU 4 302 302 GLU GLU A . n A 1 5 GLN 5 303 303 GLN GLN A . n A 1 6 PHE 6 304 304 PHE PHE A . n A 1 7 ARG 7 305 305 ARG ARG A . n A 1 8 ALA 8 306 306 ALA ALA A . n A 1 9 ALA 9 307 307 ALA ALA A . n A 1 10 LEU 10 308 308 LEU LEU A . n A 1 11 GLN 11 309 309 GLN GLN A . n A 1 12 LEU 12 310 310 LEU LEU A . n A 1 13 VAL 13 311 311 VAL VAL A . n A 1 14 VAL 14 312 312 VAL VAL A . n A 1 15 ASP 15 313 313 ASP ASP A . n A 1 16 PRO 16 314 314 PRO PRO A . n A 1 17 GLY 17 315 315 GLY GLY A . n A 1 18 ASP 18 316 316 ASP ASP A . n A 1 19 PRO 19 317 317 PRO PRO A . n A 1 20 ARG 20 318 318 ARG ARG A . n A 1 21 SER 21 319 319 SER SER A . n A 1 22 TYR 22 320 320 TYR TYR A . n A 1 23 LEU 23 321 321 LEU LEU A . n A 1 24 ASP 24 322 322 ASP ASP A . n A 1 25 ASN 25 323 323 ASN ASN A . n A 1 26 PHE 26 324 324 PHE PHE A . n A 1 27 ILE 27 325 325 ILE ILE A . n A 1 28 LYS 28 326 326 LYS LYS A . n A 1 29 ILE 29 327 327 ILE ILE A . n A 1 30 GLY 30 328 328 GLY GLY A . n A 1 31 GLU 31 329 329 GLU GLU A . n A 1 32 GLY 32 330 330 GLY GLY A . n A 1 33 SER 33 331 331 SER SER A . n A 1 34 THR 34 332 332 THR THR A . n A 1 35 GLY 35 333 333 GLY GLY A . n A 1 36 ILE 36 334 334 ILE ILE A . n A 1 37 VAL 37 335 335 VAL VAL A . n A 1 38 CYS 38 336 336 CYS CYS A . n A 1 39 ILE 39 337 337 ILE ILE A . n A 1 40 ALA 40 338 338 ALA ALA A . n A 1 41 THR 41 339 339 THR THR A . n A 1 42 VAL 42 340 340 VAL VAL A . n A 1 43 ARG 43 341 341 ARG ARG A . n A 1 44 SER 44 342 342 SER SER A . n A 1 45 SER 45 343 343 SER SER A . n A 1 46 GLY 46 344 344 GLY GLY A . n A 1 47 LYS 47 345 345 LYS LYS A . n A 1 48 LEU 48 346 346 LEU LEU A . n A 1 49 VAL 49 347 347 VAL VAL A . n A 1 50 ALA 50 348 348 ALA ALA A . n A 1 51 VAL 51 349 349 VAL VAL A . n A 1 52 LYS 52 350 350 LYS LYS A . n A 1 53 LYS 53 351 351 LYS LYS A . n A 1 54 MET 54 352 352 MET MET A . n A 1 55 ASP 55 353 353 ASP ASP A . n A 1 56 LEU 56 354 354 LEU LEU A . n A 1 57 ARG 57 355 355 ARG ARG A . n A 1 58 LYS 58 356 356 LYS LYS A . n A 1 59 GLN 59 357 357 GLN GLN A . n A 1 60 GLN 60 358 358 GLN GLN A . n A 1 61 ARG 61 359 359 ARG ARG A . n A 1 62 ARG 62 360 360 ARG ARG A . n A 1 63 GLU 63 361 361 GLU GLU A . n A 1 64 LEU 64 362 362 LEU LEU A . n A 1 65 LEU 65 363 363 LEU LEU A . n A 1 66 PHE 66 364 364 PHE PHE A . n A 1 67 ASN 67 365 365 ASN ASN A . n A 1 68 GLU 68 366 366 GLU GLU A . n A 1 69 VAL 69 367 367 VAL VAL A . n A 1 70 VAL 70 368 368 VAL VAL A . n A 1 71 ILE 71 369 369 ILE ILE A . n A 1 72 MET 72 370 370 MET MET A . n A 1 73 ARG 73 371 371 ARG ARG A . n A 1 74 ASP 74 372 372 ASP ASP A . n A 1 75 TYR 75 373 373 TYR TYR A . n A 1 76 GLN 76 374 374 GLN GLN A . n A 1 77 HIS 77 375 375 HIS HIS A . n A 1 78 GLU 78 376 376 GLU GLU A . n A 1 79 ASN 79 377 377 ASN ASN A . n A 1 80 VAL 80 378 378 VAL VAL A . n A 1 81 VAL 81 379 379 VAL VAL A . n A 1 82 GLU 82 380 380 GLU GLU A . n A 1 83 MET 83 381 381 MET MET A . n A 1 84 TYR 84 382 382 TYR TYR A . n A 1 85 ASN 85 383 383 ASN ASN A . n A 1 86 SER 86 384 384 SER SER A . n A 1 87 TYR 87 385 385 TYR TYR A . n A 1 88 LEU 88 386 386 LEU LEU A . n A 1 89 VAL 89 387 387 VAL VAL A . n A 1 90 GLY 90 388 388 GLY GLY A . n A 1 91 ASP 91 389 389 ASP ASP A . n A 1 92 GLU 92 390 390 GLU GLU A . n A 1 93 LEU 93 391 391 LEU LEU A . n A 1 94 TRP 94 392 392 TRP TRP A . n A 1 95 VAL 95 393 393 VAL VAL A . n A 1 96 VAL 96 394 394 VAL VAL A . n A 1 97 MET 97 395 395 MET MET A . n A 1 98 GLU 98 396 396 GLU GLU A . n A 1 99 PHE 99 397 397 PHE PHE A . n A 1 100 LEU 100 398 398 LEU LEU A . n A 1 101 GLU 101 399 399 GLU GLU A . n A 1 102 GLY 102 400 400 GLY GLY A . n A 1 103 GLY 103 401 401 GLY GLY A . n A 1 104 ALA 104 402 402 ALA ALA A . n A 1 105 LEU 105 403 403 LEU LEU A . n A 1 106 THR 106 404 404 THR THR A . n A 1 107 ASP 107 405 405 ASP ASP A . n A 1 108 ILE 108 406 406 ILE ILE A . n A 1 109 VAL 109 407 407 VAL VAL A . n A 1 110 THR 110 408 408 THR THR A . n A 1 111 HIS 111 409 409 HIS HIS A . n A 1 112 THR 112 410 410 THR THR A . n A 1 113 ARG 113 411 411 ARG ARG A . n A 1 114 MET 114 412 412 MET MET A . n A 1 115 ASN 115 413 413 ASN ASN A . n A 1 116 GLU 116 414 414 GLU GLU A . n A 1 117 GLU 117 415 415 GLU GLU A . n A 1 118 GLN 118 416 416 GLN GLN A . n A 1 119 ILE 119 417 417 ILE ILE A . n A 1 120 ALA 120 418 418 ALA ALA A . n A 1 121 ALA 121 419 419 ALA ALA A . n A 1 122 VAL 122 420 420 VAL VAL A . n A 1 123 CYS 123 421 421 CYS CYS A . n A 1 124 LEU 124 422 422 LEU LEU A . n A 1 125 ALA 125 423 423 ALA ALA A . n A 1 126 VAL 126 424 424 VAL VAL A . n A 1 127 LEU 127 425 425 LEU LEU A . n A 1 128 GLN 128 426 426 GLN GLN A . n A 1 129 ALA 129 427 427 ALA ALA A . n A 1 130 LEU 130 428 428 LEU LEU A . n A 1 131 SER 131 429 429 SER SER A . n A 1 132 VAL 132 430 430 VAL VAL A . n A 1 133 LEU 133 431 431 LEU LEU A . n A 1 134 HIS 134 432 432 HIS HIS A . n A 1 135 ALA 135 433 433 ALA ALA A . n A 1 136 GLN 136 434 434 GLN GLN A . n A 1 137 GLY 137 435 435 GLY GLY A . n A 1 138 VAL 138 436 436 VAL VAL A . n A 1 139 ILE 139 437 437 ILE ILE A . n A 1 140 HIS 140 438 438 HIS HIS A . n A 1 141 ARG 141 439 439 ARG ARG A . n A 1 142 ASP 142 440 440 ASP ASP A . n A 1 143 ILE 143 441 441 ILE ILE A . n A 1 144 LYS 144 442 442 LYS LYS A . n A 1 145 SER 145 443 443 SER SER A . n A 1 146 ASP 146 444 444 ASP ASP A . n A 1 147 SER 147 445 445 SER SER A . n A 1 148 ILE 148 446 446 ILE ILE A . n A 1 149 LEU 149 447 447 LEU LEU A . n A 1 150 LEU 150 448 448 LEU LEU A . n A 1 151 THR 151 449 449 THR THR A . n A 1 152 HIS 152 450 450 HIS HIS A . n A 1 153 ASP 153 451 451 ASP ASP A . n A 1 154 GLY 154 452 452 GLY GLY A . n A 1 155 ARG 155 453 453 ARG ARG A . n A 1 156 VAL 156 454 454 VAL VAL A . n A 1 157 LYS 157 455 455 LYS LYS A . n A 1 158 LEU 158 456 456 LEU LEU A . n A 1 159 SER 159 457 457 SER SER A . n A 1 160 ASP 160 458 458 ASP ASP A . n A 1 161 PHE 161 459 459 PHE PHE A . n A 1 162 GLY 162 460 460 GLY GLY A . n A 1 163 PHE 163 461 461 PHE PHE A . n A 1 164 CYS 164 462 462 CYS CYS A . n A 1 165 ALA 165 463 463 ALA ALA A . n A 1 166 GLN 166 464 464 GLN GLN A . n A 1 167 VAL 167 465 465 VAL VAL A . n A 1 168 SER 168 466 466 SER SER A . n A 1 169 LYS 169 467 467 LYS LYS A . n A 1 170 GLU 170 468 468 GLU GLU A . n A 1 171 VAL 171 469 469 VAL VAL A . n A 1 172 PRO 172 470 470 PRO PRO A . n A 1 173 ARG 173 471 471 ARG ARG A . n A 1 174 ARG 174 472 472 ARG ARG A . n A 1 175 LYS 175 473 473 LYS LYS A . n A 1 176 SEP 176 474 474 SEP SEP A . n A 1 177 LEU 177 475 475 LEU LEU A . n A 1 178 VAL 178 476 476 VAL VAL A . n A 1 179 GLY 179 477 477 GLY GLY A . n A 1 180 THR 180 478 478 THR THR A . n A 1 181 PRO 181 479 479 PRO PRO A . n A 1 182 TYR 182 480 480 TYR TYR A . n A 1 183 TRP 183 481 481 TRP TRP A . n A 1 184 MET 184 482 482 MET MET A . n A 1 185 ALA 185 483 483 ALA ALA A . n A 1 186 PRO 186 484 484 PRO PRO A . n A 1 187 GLU 187 485 485 GLU GLU A . n A 1 188 LEU 188 486 486 LEU LEU A . n A 1 189 ILE 189 487 487 ILE ILE A . n A 1 190 SER 190 488 488 SER SER A . n A 1 191 ARG 191 489 489 ARG ARG A . n A 1 192 LEU 192 490 490 LEU LEU A . n A 1 193 PRO 193 491 491 PRO PRO A . n A 1 194 TYR 194 492 492 TYR TYR A . n A 1 195 GLY 195 493 493 GLY GLY A . n A 1 196 PRO 196 494 494 PRO PRO A . n A 1 197 GLU 197 495 495 GLU GLU A . n A 1 198 VAL 198 496 496 VAL VAL A . n A 1 199 ASP 199 497 497 ASP ASP A . n A 1 200 ILE 200 498 498 ILE ILE A . n A 1 201 TRP 201 499 499 TRP TRP A . n A 1 202 SER 202 500 500 SER SER A . n A 1 203 LEU 203 501 501 LEU LEU A . n A 1 204 GLY 204 502 502 GLY GLY A . n A 1 205 ILE 205 503 503 ILE ILE A . n A 1 206 MET 206 504 504 MET MET A . n A 1 207 VAL 207 505 505 VAL VAL A . n A 1 208 ILE 208 506 506 ILE ILE A . n A 1 209 GLU 209 507 507 GLU GLU A . n A 1 210 MET 210 508 508 MET MET A . n A 1 211 VAL 211 509 509 VAL VAL A . n A 1 212 ASP 212 510 510 ASP ASP A . n A 1 213 GLY 213 511 511 GLY GLY A . n A 1 214 GLU 214 512 512 GLU GLU A . n A 1 215 PRO 215 513 513 PRO PRO A . n A 1 216 PRO 216 514 514 PRO PRO A . n A 1 217 TYR 217 515 515 TYR TYR A . n A 1 218 PHE 218 516 516 PHE PHE A . n A 1 219 ASN 219 517 517 ASN ASN A . n A 1 220 GLU 220 518 518 GLU GLU A . n A 1 221 PRO 221 519 519 PRO PRO A . n A 1 222 PRO 222 520 520 PRO PRO A . n A 1 223 LEU 223 521 521 LEU LEU A . n A 1 224 LYS 224 522 522 LYS LYS A . n A 1 225 ALA 225 523 523 ALA ALA A . n A 1 226 MET 226 524 524 MET MET A . n A 1 227 LYS 227 525 525 LYS LYS A . n A 1 228 MET 228 526 526 MET MET A . n A 1 229 ILE 229 527 527 ILE ILE A . n A 1 230 ARG 230 528 528 ARG ARG A . n A 1 231 ASP 231 529 529 ASP ASP A . n A 1 232 ASN 232 530 530 ASN ASN A . n A 1 233 LEU 233 531 531 LEU LEU A . n A 1 234 PRO 234 532 532 PRO PRO A . n A 1 235 PRO 235 533 533 PRO PRO A . n A 1 236 ARG 236 534 534 ARG ARG A . n A 1 237 LEU 237 535 535 LEU LEU A . n A 1 238 LYS 238 536 536 LYS LYS A . n A 1 239 ASN 239 537 537 ASN ASN A . n A 1 240 LEU 240 538 538 LEU LEU A . n A 1 241 HIS 241 539 539 HIS HIS A . n A 1 242 LYS 242 540 540 LYS LYS A . n A 1 243 VAL 243 541 541 VAL VAL A . n A 1 244 SER 244 542 542 SER SER A . n A 1 245 PRO 245 543 543 PRO PRO A . n A 1 246 SER 246 544 544 SER SER A . n A 1 247 LEU 247 545 545 LEU LEU A . n A 1 248 LYS 248 546 546 LYS LYS A . n A 1 249 GLY 249 547 547 GLY GLY A . n A 1 250 PHE 250 548 548 PHE PHE A . n A 1 251 LEU 251 549 549 LEU LEU A . n A 1 252 ASP 252 550 550 ASP ASP A . n A 1 253 ARG 253 551 551 ARG ARG A . n A 1 254 LEU 254 552 552 LEU LEU A . n A 1 255 LEU 255 553 553 LEU LEU A . n A 1 256 VAL 256 554 554 VAL VAL A . n A 1 257 ARG 257 555 555 ARG ARG A . n A 1 258 ASP 258 556 556 ASP ASP A . n A 1 259 PRO 259 557 557 PRO PRO A . n A 1 260 ALA 260 558 558 ALA ALA A . n A 1 261 GLN 261 559 559 GLN GLN A . n A 1 262 ARG 262 560 560 ARG ARG A . n A 1 263 ALA 263 561 561 ALA ALA A . n A 1 264 THR 264 562 562 THR THR A . n A 1 265 ALA 265 563 563 ALA ALA A . n A 1 266 ALA 266 564 564 ALA ALA A . n A 1 267 GLU 267 565 565 GLU GLU A . n A 1 268 LEU 268 566 566 LEU LEU A . n A 1 269 LEU 269 567 567 LEU LEU A . n A 1 270 LYS 270 568 568 LYS LYS A . n A 1 271 HIS 271 569 569 HIS HIS A . n A 1 272 PRO 272 570 570 PRO PRO A . n A 1 273 PHE 273 571 571 PHE PHE A . n A 1 274 LEU 274 572 572 LEU LEU A . n A 1 275 ALA 275 573 573 ALA ALA A . n A 1 276 LYS 276 574 574 LYS LYS A . n A 1 277 ALA 277 575 575 ALA ALA A . n A 1 278 GLY 278 576 576 GLY GLY A . n A 1 279 PRO 279 577 577 PRO PRO A . n A 1 280 PRO 280 578 578 PRO PRO A . n A 1 281 ALA 281 579 579 ALA ALA A . n A 1 282 SER 282 580 580 SER SER A . n A 1 283 ILE 283 581 581 ILE ILE A . n A 1 284 VAL 284 582 582 VAL VAL A . n A 1 285 PRO 285 583 583 PRO PRO A . n A 1 286 LEU 286 584 584 LEU LEU A . n A 1 287 MET 287 585 585 MET MET A . n A 1 288 ARG 288 586 586 ARG ARG A . n A 1 289 GLN 289 587 587 GLN GLN A . n A 1 290 ASN 290 588 588 ASN ASN A . n A 1 291 ARG 291 589 589 ARG ARG A . n A 1 292 THR 292 590 ? ? ? A . n A 1 293 ARG 293 591 ? ? ? A . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id SEP _pdbx_struct_mod_residue.label_seq_id 176 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id SEP _pdbx_struct_mod_residue.auth_seq_id 474 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id SER _pdbx_struct_mod_residue.details PHOSPHOSERINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-12 2 'Structure model' 1 1 2014-02-26 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -29.6047 16.5046 -22.2012 0.2412 0.9745 0.5680 0.1532 0.0551 0.0598 0.6957 0.3175 0.7840 0.0834 -0.0935 -0.1197 -0.1321 0.0208 -0.0910 0.0026 0.2644 0.2332 -0.0011 0.1604 0.3073 'X-RAY DIFFRACTION' 2 ? refined -29.3900 3.0453 -1.2173 0.5729 0.7818 0.5618 0.0774 0.0029 0.1857 1.0338 1.6781 1.5482 1.2907 -0.7227 -1.1527 0.3689 -0.5854 -0.1198 0.0351 0.0404 -0.0293 0.2760 0.0905 0.5044 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 299 A 398 '( CHAIN A AND RESID 299:398 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 399 A 589 '( CHAIN A AND RESID 399:589 )' ? ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 329 ? ? -159.43 -145.71 2 1 SER A 331 ? ? -57.89 -76.99 3 1 ARG A 371 ? ? -51.58 78.94 4 1 ASP A 440 ? ? -155.72 38.64 5 1 LYS A 442 ? ? -170.25 -175.46 6 1 ASP A 458 ? ? 52.93 70.48 7 1 PHE A 459 ? ? -91.00 31.77 8 1 LEU A 553 ? ? -93.38 56.82 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 371 ? CG ? A ARG 73 CG 2 1 Y 1 A ARG 371 ? CD ? A ARG 73 CD 3 1 Y 1 A ARG 371 ? NE ? A ARG 73 NE 4 1 Y 1 A ARG 371 ? CZ ? A ARG 73 CZ 5 1 Y 1 A ARG 371 ? NH1 ? A ARG 73 NH1 6 1 Y 1 A ARG 371 ? NH2 ? A ARG 73 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 590 ? A THR 292 2 1 Y 1 A ARG 591 ? A ARG 293 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol' 2OL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OL 1 601 1 2OL LIG A . C 3 HOH 1 701 1 HOH HOH A . C 3 HOH 2 702 2 HOH HOH A . C 3 HOH 3 703 4 HOH HOH A . C 3 HOH 4 704 5 HOH HOH A . C 3 HOH 5 705 6 HOH HOH A . C 3 HOH 6 706 7 HOH HOH A . C 3 HOH 7 707 9 HOH HOH A . C 3 HOH 8 708 10 HOH HOH A . C 3 HOH 9 709 11 HOH HOH A . C 3 HOH 10 710 12 HOH HOH A . #