HEADER TRANSFERASE 15-DEC-13 4O19 TITLE THE CRYSTAL STRUCTURE OF A MUTANT NAMPT (G217V) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1, PRE- COMPND 5 B CELL-ENHANCING FACTOR, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.OH,M.COONS,B.BRILLANTES,W.WANG REVDAT 2 28-FEB-24 4O19 1 REMARK SEQADV REVDAT 1 22-OCT-14 4O19 0 JRNL AUTH W.WANG,K.ELKINS,A.OH,Y.C.HO,J.WU,H.LI,Y.XIAO,M.KWONG, JRNL AUTH 2 M.COONS,B.BRILLANTES,E.CHENG,L.CROCKER,P.S.DRAGOVICH, JRNL AUTH 3 D.SAMPATH,X.ZHENG,K.W.BAIR,T.O'BRIEN,L.D.BELMONT JRNL TITL STRUCTURAL BASIS FOR RESISTANCE TO DIVERSE CLASSES OF NAMPT JRNL TITL 2 INHIBITORS. JRNL REF PLOS ONE V. 9 09366 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25285661 JRNL DOI 10.1371/JOURNAL.PONE.0109366 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1068) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 105673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3852 - 5.4249 1.00 3423 194 0.1602 0.1989 REMARK 3 2 5.4249 - 4.3069 1.00 3392 182 0.1264 0.1365 REMARK 3 3 4.3069 - 3.7628 1.00 3362 181 0.1234 0.1325 REMARK 3 4 3.7628 - 3.4188 1.00 3385 171 0.1371 0.1613 REMARK 3 5 3.4188 - 3.1739 1.00 3342 199 0.1464 0.1738 REMARK 3 6 3.1739 - 2.9868 1.00 3373 163 0.1533 0.1708 REMARK 3 7 2.9868 - 2.8372 1.00 3376 183 0.1650 0.2033 REMARK 3 8 2.8372 - 2.7137 1.00 3355 177 0.1570 0.1987 REMARK 3 9 2.7137 - 2.6093 1.00 3334 195 0.1508 0.2031 REMARK 3 10 2.6093 - 2.5192 1.00 3386 141 0.1536 0.2110 REMARK 3 11 2.5192 - 2.4405 1.00 3343 186 0.1515 0.1844 REMARK 3 12 2.4405 - 2.3707 1.00 3371 164 0.1479 0.1889 REMARK 3 13 2.3707 - 2.3083 1.00 3333 191 0.1501 0.2125 REMARK 3 14 2.3083 - 2.2520 1.00 3332 188 0.1481 0.1946 REMARK 3 15 2.2520 - 2.2008 1.00 3410 180 0.1491 0.1702 REMARK 3 16 2.2008 - 2.1539 1.00 3316 169 0.1445 0.1831 REMARK 3 17 2.1539 - 2.1109 1.00 3367 165 0.1421 0.1845 REMARK 3 18 2.1109 - 2.0710 1.00 3334 197 0.1482 0.1859 REMARK 3 19 2.0710 - 2.0340 1.00 3330 172 0.1516 0.2290 REMARK 3 20 2.0340 - 1.9996 1.00 3362 175 0.1511 0.1822 REMARK 3 21 1.9996 - 1.9673 1.00 3339 174 0.1813 0.2313 REMARK 3 22 1.9673 - 1.9370 1.00 3356 186 0.1813 0.2305 REMARK 3 23 1.9370 - 1.9086 1.00 3348 176 0.1790 0.2218 REMARK 3 24 1.9086 - 1.8817 1.00 3345 174 0.1755 0.2395 REMARK 3 25 1.8817 - 1.8562 1.00 3350 176 0.1807 0.2590 REMARK 3 26 1.8562 - 1.8321 1.00 3338 171 0.1846 0.2486 REMARK 3 27 1.8321 - 1.8092 1.00 3370 179 0.1977 0.2434 REMARK 3 28 1.8092 - 1.7874 1.00 3344 152 0.2029 0.2800 REMARK 3 29 1.7874 - 1.7666 1.00 3337 185 0.2177 0.2749 REMARK 3 30 1.7666 - 1.7500 0.90 3012 162 0.2198 0.2380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7767 REMARK 3 ANGLE : 1.245 10506 REMARK 3 CHIRALITY : 0.086 1153 REMARK 3 PLANARITY : 0.006 1333 REMARK 3 DIHEDRAL : 12.891 2866 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 8:487 OR RESID 602:604 ) ) OR REMARK 3 ( CHAIN B AND ( RESID 8:486 OR RESID 604:609 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5723 1.1961 22.6852 REMARK 3 T TENSOR REMARK 3 T11: -0.0069 T22: -0.0093 REMARK 3 T33: -0.0225 T12: -0.0064 REMARK 3 T13: -0.0008 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.0472 L22: 0.0505 REMARK 3 L33: 0.0620 L12: -0.0027 REMARK 3 L13: -0.0006 L23: 0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0023 S13: -0.0048 REMARK 3 S21: -0.0356 S22: 0.0202 S23: -0.0193 REMARK 3 S31: 0.0046 S32: 0.0464 S33: 0.0847 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000083914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN COOLED DUAL REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.14400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 LEU A 492 REMARK 465 GLU A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 GLU B 487 REMARK 465 ALA B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 LEU B 492 REMARK 465 GLU B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 487 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 922 O HOH A 973 2.07 REMARK 500 O HOH A 1160 O HOH B 1098 2.09 REMARK 500 O HOH B 886 O HOH B 1063 2.10 REMARK 500 O HOH A 1017 O HOH B 866 2.12 REMARK 500 O HOH B 1189 O HOH B 1191 2.13 REMARK 500 OE2 GLU A 363 O HOH A 906 2.13 REMARK 500 O HOH B 1037 O HOH B 1060 2.13 REMARK 500 O HOH A 1088 O HOH A 1125 2.14 REMARK 500 O HOH A 1060 O HOH A 1109 2.14 REMARK 500 O HOH A 1179 O HOH B 1130 2.15 REMARK 500 O HOH A 1037 O HOH A 1185 2.16 REMARK 500 OE1 GLU A 178 O HOH A 899 2.16 REMARK 500 O HOH B 881 O HOH B 1151 2.16 REMARK 500 O LEU B 486 O HOH B 1012 2.17 REMARK 500 O HOH B 741 O HOH B 1045 2.17 REMARK 500 OE1 GLU B 475 O HOH B 1109 2.18 REMARK 500 O HOH A 1073 O HOH A 1079 2.19 REMARK 500 O HOH B 933 O HOH B 1014 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 32.30 70.34 REMARK 500 PHE A 96 123.31 172.02 REMARK 500 TYR A 231 -60.30 -127.86 REMARK 500 PHE A 269 60.50 -114.34 REMARK 500 GLU A 293 -71.92 -135.04 REMARK 500 ASP A 313 20.79 -146.46 REMARK 500 ASP A 416 71.20 -161.93 REMARK 500 TYR B 231 -57.58 -125.99 REMARK 500 PHE B 269 61.52 -115.95 REMARK 500 ASP B 282 96.65 -160.94 REMARK 500 GLU B 293 -66.85 -131.05 REMARK 500 ASP B 313 19.50 -150.30 REMARK 500 ASP B 416 71.21 -161.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O13 RELATED DB: PDB REMARK 900 RELATED ID: 4O14 RELATED DB: PDB REMARK 900 RELATED ID: 4O15 RELATED DB: PDB REMARK 900 RELATED ID: 4O16 RELATED DB: PDB REMARK 900 RELATED ID: 4O17 RELATED DB: PDB REMARK 900 RELATED ID: 4O18 RELATED DB: PDB REMARK 900 RELATED ID: 4O1A RELATED DB: PDB REMARK 900 RELATED ID: 4O1B RELATED DB: PDB REMARK 900 RELATED ID: 4O1C RELATED DB: PDB REMARK 900 RELATED ID: 4O1D RELATED DB: PDB REMARK 900 RELATED ID: 4O28 RELATED DB: PDB DBREF 4O19 A 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 4O19 B 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 4O19 VAL A 217 UNP P43490 GLY 217 ENGINEERED MUTATION SEQADV 4O19 LEU A 492 UNP P43490 EXPRESSION TAG SEQADV 4O19 GLU A 493 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 494 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 495 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 496 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 497 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 498 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 499 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 500 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS A 501 UNP P43490 EXPRESSION TAG SEQADV 4O19 VAL B 217 UNP P43490 GLY 217 ENGINEERED MUTATION SEQADV 4O19 LEU B 492 UNP P43490 EXPRESSION TAG SEQADV 4O19 GLU B 493 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 494 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 495 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 496 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 497 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 498 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 499 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 500 UNP P43490 EXPRESSION TAG SEQADV 4O19 HIS B 501 UNP P43490 EXPRESSION TAG SEQRES 1 A 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 501 SER ALA HIS LEU VAL ASN PHE LYS VAL THR ASP THR VAL SEQRES 18 A 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 A 501 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 501 SER ALA HIS LEU VAL ASN PHE LYS VAL THR ASP THR VAL SEQRES 18 B 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 B 501 HIS HIS HIS HIS HIS HIS HIS HET PO4 A 601 5 HET EDO A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET PO4 B 601 5 HET EDO B 602 4 HET EDO B 603 4 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HET EDO B 607 4 HET EDO B 608 4 HET EDO B 609 4 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 EDO 11(C2 H6 O2) FORMUL 16 HOH *1024(H2 O) HELIX 1 1 ASN A 10 ALA A 14 5 5 HELIX 2 2 ASP A 16 GLN A 25 5 10 HELIX 3 3 GLY A 61 LEU A 70 1 10 HELIX 4 4 THR A 76 GLN A 92 1 17 HELIX 5 5 ASN A 97 ASP A 109 1 13 HELIX 6 6 ASP A 138 TYR A 142 5 5 HELIX 7 7 TRP A 143 ILE A 148 1 6 HELIX 8 8 ILE A 148 GLN A 154 1 7 HELIX 9 9 SER A 155 GLY A 181 1 27 HELIX 10 10 GLY A 185 TYR A 188 5 4 HELIX 11 11 SER A 200 LEU A 212 1 13 HELIX 12 12 VAL A 221 TYR A 231 1 11 HELIX 13 13 GLU A 246 ALA A 252 1 7 HELIX 14 14 TRP A 253 ASP A 256 5 4 HELIX 15 15 HIS A 257 PHE A 269 1 13 HELIX 16 16 ASP A 282 LYS A 289 1 8 HELIX 17 17 LEU A 295 VAL A 300 1 6 HELIX 18 18 ASN A 316 PHE A 332 1 17 HELIX 19 19 ASP A 357 LYS A 371 1 15 HELIX 20 20 SER A 374 GLU A 376 5 3 HELIX 21 21 GLY A 383 GLN A 388 1 6 HELIX 22 22 ASP A 420 ARG A 424 5 5 HELIX 23 23 GLY A 446 GLU A 451 5 6 HELIX 24 24 SER A 472 ALA A 480 1 9 HELIX 25 25 LEU A 482 GLU A 487 1 6 HELIX 26 26 ASN B 10 ALA B 14 5 5 HELIX 27 27 ASP B 16 GLN B 25 5 10 HELIX 28 28 GLY B 61 LEU B 70 1 10 HELIX 29 29 THR B 76 PHE B 91 1 16 HELIX 30 30 ASN B 97 ASP B 109 1 13 HELIX 31 31 ASP B 138 TYR B 142 5 5 HELIX 32 32 TRP B 143 ILE B 148 1 6 HELIX 33 33 ILE B 148 GLN B 154 1 7 HELIX 34 34 SER B 155 GLY B 181 1 27 HELIX 35 35 GLY B 185 TYR B 188 5 4 HELIX 36 36 SER B 200 LEU B 212 1 13 HELIX 37 37 VAL B 221 TYR B 231 1 11 HELIX 38 38 GLU B 246 ALA B 252 1 7 HELIX 39 39 TRP B 253 ASP B 256 5 4 HELIX 40 40 HIS B 257 PHE B 269 1 13 HELIX 41 41 ASP B 282 LYS B 289 1 8 HELIX 42 42 LEU B 295 VAL B 300 1 6 HELIX 43 43 ASN B 316 PHE B 332 1 17 HELIX 44 44 ASP B 357 LYS B 371 1 15 HELIX 45 45 SER B 374 GLU B 376 5 3 HELIX 46 46 GLY B 383 GLN B 388 1 6 HELIX 47 47 ASP B 420 ARG B 424 5 5 HELIX 48 48 GLY B 446 GLU B 451 5 6 HELIX 49 49 SER B 472 ALA B 480 1 9 SHEET 1 A 7 LEU A 409 ASN A 412 0 SHEET 2 A 7 CYS A 397 THR A 406 -1 N VAL A 404 O ILE A 411 SHEET 3 A 7 THR A 30 CYS A 39 -1 N TYR A 34 O TYR A 403 SHEET 4 A 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 A 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 A 7 HIS A 459 LYS A 463 -1 O HIS A 459 N ALA A 118 SHEET 7 A 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 B 2 GLU A 56 VAL A 58 0 SHEET 2 B 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 C 5 LEU A 190 ASP A 192 0 SHEET 2 C 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 C 5 LEU A 348 GLN A 352 1 N GLN A 352 O ALA A 379 SHEET 4 C 5 LEU A 308 ARG A 311 1 N ILE A 310 O ARG A 349 SHEET 5 C 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 D 2 THR A 335 GLU A 336 0 SHEET 2 D 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 E 2 SER A 431 ARG A 434 0 SHEET 2 E 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SHEET 1 F 7 LEU B 409 ASN B 412 0 SHEET 2 F 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 F 7 THR B 30 CYS B 39 -1 N TYR B 34 O TYR B 403 SHEET 4 F 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 F 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 F 7 HIS B 459 LYS B 463 -1 O HIS B 459 N ALA B 118 SHEET 7 F 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 G 2 GLU B 56 VAL B 58 0 SHEET 2 G 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 H 5 LEU B 190 ASP B 192 0 SHEET 2 H 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 H 5 LEU B 348 GLN B 352 1 N GLN B 352 O ALA B 379 SHEET 4 H 5 LEU B 308 ARG B 311 1 N ILE B 310 O ARG B 349 SHEET 5 H 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 I 2 THR B 335 GLU B 336 0 SHEET 2 I 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 J 2 SER B 431 ARG B 434 0 SHEET 2 J 2 PHE B 440 LEU B 443 -1 O VAL B 441 N HIS B 433 SITE 1 AC1 9 ARG A 40 ARG A 392 SER A 398 LYS A 400 SITE 2 AC1 9 HOH A 732 HOH A 748 HOH A 842 HOH A1025 SITE 3 AC1 9 EDO B 602 SITE 1 AC2 6 HIS A 191 VAL A 242 SER A 275 HOH A 773 SITE 2 AC2 6 HOH A 925 HOH A 941 SITE 1 AC3 6 PHE A 123 VAL A 124 ARG A 434 ASN A 479 SITE 2 AC3 6 HOH A 793 HOH A1007 SITE 1 AC4 7 GLU A 246 HIS A 247 ARG A 311 HOH A 735 SITE 2 AC4 7 HOH A1017 TYR B 18 HOH B 761 SITE 1 AC5 9 ARG B 40 ARG B 392 SER B 398 LYS B 400 SITE 2 AC5 9 HOH B 740 HOH B 748 HOH B 856 HOH B1188 SITE 3 AC5 9 HOH B1189 SITE 1 AC6 8 ARG A 392 PO4 A 601 HOH A 908 ASP B 313 SITE 2 AC6 8 GLY B 353 ASP B 354 HOH B 864 HOH B 922 SITE 1 AC7 6 HIS B 191 VAL B 242 ILE B 351 HOH B 777 SITE 2 AC7 6 HOH B 799 HOH B1006 SITE 1 AC8 7 HOH A1091 GLY B 383 GLY B 384 HOH B 843 SITE 2 AC8 7 HOH B 864 HOH B 913 HOH B1010 SITE 1 AC9 6 LYS B 189 GLU B 376 ILE B 378 ALA B 379 SITE 2 AC9 6 HOH B 895 HOH B1079 SITE 1 BC1 5 TYR A 18 GLU B 246 HIS B 247 ARG B 311 SITE 2 BC1 5 HOH B 725 SITE 1 BC2 7 HIS A 247 SER A 248 THR A 251 HOH A 735 SITE 2 BC2 7 LYS B 400 CYS B 401 SER B 425 SITE 1 BC3 8 PHE A 193 GLY A 194 ARG A 196 GLY A 197 SITE 2 BC3 8 GLY A 384 HOH A1226 ARG B 392 HOH B 957 SITE 1 BC4 6 SER B 31 LYS B 32 ASN B 136 PRO B 139 SITE 2 BC4 6 HOH B 939 HOH B1101 CRYST1 60.646 106.288 83.263 90.00 96.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016489 0.000000 0.001855 0.00000 SCALE2 0.000000 0.009408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012086 0.00000