HEADER HYDROLASE 18-DEC-13 4O47 TITLE CRYSTAL STRUCTURE OF UNCLEAVED GUINEA PIG L-ASPARAGINASE TYPE III COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 24-332; COMPND 5 EC: 3.5.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAVIA PORCELLUS; SOURCE 3 ORGANISM_COMMON: GUINEA PIG; SOURCE 4 ORGANISM_TAXID: 10141; SOURCE 5 GENE: LOC100713636; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.SCHALK,A.LAVIE REVDAT 3 20-SEP-23 4O47 1 REMARK SEQADV LINK REVDAT 2 07-MAY-14 4O47 1 JRNL REVDAT 1 09-APR-14 4O47 0 JRNL AUTH A.M.SCHALK,A.LAVIE JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF GUINEA PIG JRNL TITL 2 L-ASPARAGINASE TYPE III. JRNL REF BIOCHEMISTRY V. 53 2318 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24669941 JRNL DOI 10.1021/BI401692V REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 78216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4120 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 280 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4233 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4333 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4230 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5855 ; 1.575 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9704 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 593 ; 6.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;31.023 ;23.614 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;14.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.069 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5029 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 945 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2360 ; 3.119 ; 3.977 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2359 ; 3.117 ; 3.974 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2948 ; 4.250 ; 5.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2949 ; 4.251 ; 5.940 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1973 ; 3.733 ; 4.602 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1972 ; 3.731 ; 4.599 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2904 ; 5.748 ; 6.674 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4875 ; 7.291 ;32.204 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4821 ; 7.284 ;32.106 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4O47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 14.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49600 REMARK 200 FOR SHELL : 2.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 0.2 M AMMONIUM REMARK 280 SULFATE, 13-15% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.64733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.32367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.32367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.64733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 ASN A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 CYS A 14 REMARK 465 GLU A 154 REMARK 465 LYS A 155 REMARK 465 ASP A 156 REMARK 465 ALA A 157 REMARK 465 SER A 158 REMARK 465 SER A 159 REMARK 465 PRO A 160 REMARK 465 ASP A 161 REMARK 465 CYS A 162 REMARK 465 PRO A 163 REMARK 465 LYS A 164 REMARK 465 ASN A 165 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 GLY B -9 REMARK 465 ASN B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 CYS B 14 REMARK 465 ILE B 15 REMARK 465 SER B 16 REMARK 465 CYS B 17 REMARK 465 GLU B 18 REMARK 465 GLN B 153 REMARK 465 GLU B 154 REMARK 465 LYS B 155 REMARK 465 ASP B 156 REMARK 465 ALA B 157 REMARK 465 SER B 158 REMARK 465 SER B 159 REMARK 465 PRO B 160 REMARK 465 ASP B 161 REMARK 465 CYS B 162 REMARK 465 PRO B 163 REMARK 465 LYS B 164 REMARK 465 ASN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 15 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 5 CA - CB - CG ANGL. DEV. = -15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 16 62.26 -67.64 REMARK 500 CYS A 17 -42.60 15.54 REMARK 500 ALA A 63 147.39 -172.91 REMARK 500 ILE A 213 -57.36 -135.42 REMARK 500 ILE A 298 -41.06 -138.03 REMARK 500 ALA B 63 137.49 -177.16 REMARK 500 ILE B 213 -62.03 -137.68 REMARK 500 ILE B 213 -62.03 -139.92 REMARK 500 ILE B 298 -45.81 -131.37 REMARK 500 ASN B 301 -71.32 -76.43 REMARK 500 ASP B 302 32.16 -67.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 55 O REMARK 620 2 GLU A 56 O 81.4 REMARK 620 3 ASP A 58 O 76.1 106.7 REMARK 620 4 PHE A 61 O 105.3 162.8 90.3 REMARK 620 5 ALA A 63 O 104.9 80.0 173.3 83.0 REMARK 620 6 HIS A 65 O 161.2 84.8 95.9 91.6 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 55 O REMARK 620 2 GLU B 56 O 77.6 REMARK 620 3 ASP B 58 O 81.2 101.2 REMARK 620 4 PHE B 61 O 112.2 162.2 95.2 REMARK 620 5 ALA B 63 O 104.1 77.3 174.0 85.7 REMARK 620 6 HIS B 65 O 157.0 84.3 88.7 89.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O48 RELATED DB: PDB DBREF 4O47 A 1 309 UNP H0VQC8 H0VQC8_CAVPO 24 332 DBREF 4O47 B 1 309 UNP H0VQC8 H0VQC8_CAVPO 24 332 SEQADV 4O47 MET A -22 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY A -21 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER A -20 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER A -19 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -18 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -17 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -16 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -15 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -14 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A -13 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER A -12 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER A -11 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY A -10 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY A -9 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 ASN A -8 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLU A -7 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 ASN A -6 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 LEU A -5 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 TYR A -4 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 PHE A -3 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLN A -2 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY A -1 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS A 0 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 MET B -22 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY B -21 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER B -20 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER B -19 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -18 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -17 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -16 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -15 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -14 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B -13 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER B -12 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 SER B -11 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY B -10 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY B -9 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 ASN B -8 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLU B -7 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 ASN B -6 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 LEU B -5 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 TYR B -4 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 PHE B -3 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLN B -2 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 GLY B -1 UNP H0VQC8 EXPRESSION TAG SEQADV 4O47 HIS B 0 UNP H0VQC8 EXPRESSION TAG SEQRES 1 A 332 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 332 GLY ASN GLU ASN LEU TYR PHE GLN GLY HIS MET GLU PRO SEQRES 3 A 332 VAL LEU VAL VAL HIS GLY GLY GLY ALA SER CYS ILE SER SEQRES 4 A 332 CYS GLU ARG ARG GLN ARG VAL ARG GLN GLY VAL ILE ARG SEQRES 5 A 332 ALA ALA SER LEU GLY HIS GLY VAL LEU ARG ALA GLY GLY SEQRES 6 A 332 SER ALA VAL ASP ALA VAL GLU ALA ALA VAL ALA ALA LEU SEQRES 7 A 332 GLU ASP ASP ALA GLU PHE ASN ALA GLY HIS GLY SER VAL SEQRES 8 A 332 LEU THR GLU ASN GLY ASP VAL GLU MET ASP ALA SER ILE SEQRES 9 A 332 MET ASP GLY ARG ASP LEU GLY ALA GLY ALA VAL SER ALA SEQRES 10 A 332 VAL ARG CYS ILE ALA ASN PRO ILE LYS LEU ALA ARG LEU SEQRES 11 A 332 VAL MET ASP LYS THR PRO HIS CYS PHE LEU THR GLY GLN SEQRES 12 A 332 GLY ALA ALA LYS PHE ALA ALA ASP MET GLY ILE SER GLU SEQRES 13 A 332 ILE PRO GLY GLU GLN LEU VAL THR GLU ARG ASN ARG LYS SEQRES 14 A 332 ARG LEU GLU LYS GLU ARG GLN GLU LYS ASP ALA SER SER SEQRES 15 A 332 PRO ASP CYS PRO LYS ASN LEU GLY THR VAL GLY ALA VAL SEQRES 16 A 332 ALA LEU ASP CYS LYS GLY ASN VAL ALA TYR ALA THR SER SEQRES 17 A 332 THR GLY GLY ILE VAL ASN LYS MET THR GLY ARG VAL GLY SEQRES 18 A 332 ASP SER PRO CYS ILE GLY SER GLY GLY TYR ALA ASP ASN SEQRES 19 A 332 SER ILE GLY ALA VAL SER THR THR GLY HIS GLY GLU SER SEQRES 20 A 332 ILE LEU LYS VAL ASN LEU ALA ARG LEU ALA LEU PHE HIS SEQRES 21 A 332 LEU GLU GLN GLY GLY LYS THR VAL ASP GLU ALA ALA ASP SEQRES 22 A 332 LEU ALA LEU GLY TYR MET LYS SER ARG LEU LYS GLY LEU SEQRES 23 A 332 GLY GLY LEU ILE LEU VAL SER ARG THR GLY GLU TRP VAL SEQRES 24 A 332 ALA LYS TRP THR SER THR SER MET PRO TRP ALA ALA VAL SEQRES 25 A 332 LYS GLY GLY LYS VAL HIS ALA GLY ILE ASP LEU ASN ASP SEQRES 26 A 332 THR THR VAL THR ASP LEU CYS SEQRES 1 B 332 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 332 GLY ASN GLU ASN LEU TYR PHE GLN GLY HIS MET GLU PRO SEQRES 3 B 332 VAL LEU VAL VAL HIS GLY GLY GLY ALA SER CYS ILE SER SEQRES 4 B 332 CYS GLU ARG ARG GLN ARG VAL ARG GLN GLY VAL ILE ARG SEQRES 5 B 332 ALA ALA SER LEU GLY HIS GLY VAL LEU ARG ALA GLY GLY SEQRES 6 B 332 SER ALA VAL ASP ALA VAL GLU ALA ALA VAL ALA ALA LEU SEQRES 7 B 332 GLU ASP ASP ALA GLU PHE ASN ALA GLY HIS GLY SER VAL SEQRES 8 B 332 LEU THR GLU ASN GLY ASP VAL GLU MET ASP ALA SER ILE SEQRES 9 B 332 MET ASP GLY ARG ASP LEU GLY ALA GLY ALA VAL SER ALA SEQRES 10 B 332 VAL ARG CYS ILE ALA ASN PRO ILE LYS LEU ALA ARG LEU SEQRES 11 B 332 VAL MET ASP LYS THR PRO HIS CYS PHE LEU THR GLY GLN SEQRES 12 B 332 GLY ALA ALA LYS PHE ALA ALA ASP MET GLY ILE SER GLU SEQRES 13 B 332 ILE PRO GLY GLU GLN LEU VAL THR GLU ARG ASN ARG LYS SEQRES 14 B 332 ARG LEU GLU LYS GLU ARG GLN GLU LYS ASP ALA SER SER SEQRES 15 B 332 PRO ASP CYS PRO LYS ASN LEU GLY THR VAL GLY ALA VAL SEQRES 16 B 332 ALA LEU ASP CYS LYS GLY ASN VAL ALA TYR ALA THR SER SEQRES 17 B 332 THR GLY GLY ILE VAL ASN LYS MET THR GLY ARG VAL GLY SEQRES 18 B 332 ASP SER PRO CYS ILE GLY SER GLY GLY TYR ALA ASP ASN SEQRES 19 B 332 SER ILE GLY ALA VAL SER THR THR GLY HIS GLY GLU SER SEQRES 20 B 332 ILE LEU LYS VAL ASN LEU ALA ARG LEU ALA LEU PHE HIS SEQRES 21 B 332 LEU GLU GLN GLY GLY LYS THR VAL ASP GLU ALA ALA ASP SEQRES 22 B 332 LEU ALA LEU GLY TYR MET LYS SER ARG LEU LYS GLY LEU SEQRES 23 B 332 GLY GLY LEU ILE LEU VAL SER ARG THR GLY GLU TRP VAL SEQRES 24 B 332 ALA LYS TRP THR SER THR SER MET PRO TRP ALA ALA VAL SEQRES 25 B 332 LYS GLY GLY LYS VAL HIS ALA GLY ILE ASP LEU ASN ASP SEQRES 26 B 332 THR THR VAL THR ASP LEU CYS HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *178(H2 O) HELIX 1 1 CYS A 17 ALA A 40 1 24 HELIX 2 2 SER A 43 ASP A 58 1 16 HELIX 3 3 ASN A 100 THR A 112 1 13 HELIX 4 4 GLY A 119 MET A 129 1 11 HELIX 5 5 PRO A 135 VAL A 140 5 6 HELIX 6 6 THR A 141 ARG A 152 1 12 HELIX 7 7 HIS A 221 VAL A 228 1 8 HELIX 8 8 ASN A 229 GLN A 240 1 12 HELIX 9 9 THR A 244 LYS A 261 1 18 HELIX 10 10 ARG B 20 ALA B 40 1 21 HELIX 11 11 SER B 43 ASP B 58 1 16 HELIX 12 12 ASN B 100 THR B 112 1 13 HELIX 13 13 GLY B 119 MET B 129 1 11 HELIX 14 14 PRO B 135 VAL B 140 5 6 HELIX 15 15 THR B 141 GLU B 151 1 11 HELIX 16 16 HIS B 221 ASN B 229 1 9 HELIX 17 17 ASN B 229 GLN B 240 1 12 HELIX 18 18 THR B 244 LYS B 261 1 18 SHEET 1 A 9 PHE A 116 THR A 118 0 SHEET 2 A 9 GLY A 88 VAL A 95 1 N ALA A 91 O LEU A 117 SHEET 3 A 9 MET A 77 ASP A 83 -1 N ASP A 83 O GLY A 88 SHEET 4 A 9 VAL A 180 THR A 186 -1 O THR A 184 N SER A 80 SHEET 5 A 9 VAL A 169 LEU A 174 -1 N ALA A 171 O ALA A 183 SHEET 6 A 9 VAL A 4 HIS A 8 -1 N VAL A 6 O VAL A 172 SHEET 7 A 9 TRP A 286 LYS A 290 -1 O ALA A 287 N VAL A 7 SHEET 8 A 9 LYS A 293 GLY A 297 -1 O HIS A 295 N ALA A 288 SHEET 9 A 9 THR A 304 ASP A 307 -1 O THR A 306 N VAL A 294 SHEET 1 B 4 GLY A 207 ASP A 210 0 SHEET 2 B 4 GLY A 214 GLY A 220 -1 O GLY A 214 N ASP A 210 SHEET 3 B 4 GLY A 264 SER A 270 -1 O GLY A 265 N THR A 219 SHEET 4 B 4 TRP A 275 TRP A 279 -1 O LYS A 278 N LEU A 266 SHEET 1 C 9 PHE B 116 THR B 118 0 SHEET 2 C 9 GLY B 88 VAL B 95 1 N ALA B 91 O LEU B 117 SHEET 3 C 9 MET B 77 ASP B 83 -1 N MET B 77 O VAL B 95 SHEET 4 C 9 VAL B 180 THR B 186 -1 O THR B 186 N ASP B 78 SHEET 5 C 9 VAL B 169 LEU B 174 -1 N VAL B 169 O SER B 185 SHEET 6 C 9 VAL B 4 HIS B 8 -1 N VAL B 6 O VAL B 172 SHEET 7 C 9 TRP B 286 LYS B 290 -1 O ALA B 287 N VAL B 7 SHEET 8 C 9 LYS B 293 GLY B 297 -1 O HIS B 295 N ALA B 288 SHEET 9 C 9 THR B 304 ASP B 307 -1 O THR B 306 N VAL B 294 SHEET 1 D 4 GLY B 207 ASP B 210 0 SHEET 2 D 4 GLY B 214 GLY B 220 -1 O VAL B 216 N TYR B 208 SHEET 3 D 4 GLY B 264 SER B 270 -1 O GLY B 265 N THR B 219 SHEET 4 D 4 TRP B 275 TRP B 279 -1 O LYS B 278 N LEU B 266 LINK O LEU A 55 NA NA A 401 1555 1555 2.85 LINK O GLU A 56 NA NA A 401 1555 1555 2.49 LINK O ASP A 58 NA NA A 401 1555 1555 2.42 LINK O PHE A 61 NA NA A 401 1555 1555 2.63 LINK O ALA A 63 NA NA A 401 1555 1555 2.38 LINK O HIS A 65 NA NA A 401 1555 1555 2.18 LINK O LEU B 55 NA NA B 401 1555 1555 2.75 LINK O GLU B 56 NA NA B 401 1555 1555 2.53 LINK O ASP B 58 NA NA B 401 1555 1555 2.42 LINK O PHE B 61 NA NA B 401 1555 1555 2.64 LINK O ALA B 63 NA NA B 401 1555 1555 2.27 LINK O HIS B 65 NA NA B 401 1555 1555 2.23 SITE 1 AC1 6 LEU A 55 GLU A 56 ASP A 58 PHE A 61 SITE 2 AC1 6 ALA A 63 HIS A 65 SITE 1 AC2 6 LEU B 55 GLU B 56 ASP B 58 PHE B 61 SITE 2 AC2 6 ALA B 63 HIS B 65 CRYST1 114.872 114.872 138.971 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008705 0.005026 0.000000 0.00000 SCALE2 0.000000 0.010052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007196 0.00000