HEADER DNA BINDING PROTEIN/INHIBITOR 18-DEC-13 4O4K TITLE DNA DOUBLE-STRAND BREAK REPAIR PATHWAY CHOICE IS DIRECTED BY DISTINCT TITLE 2 MRE11 NUCLEASE ACTIVITIES CAVEAT 4O4K THE LIGAND 2PK HAS HIGH REAL SPACE VALUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXONUCLEASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 5 GENE: TM_1635; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA REPAIR DNA DOUBLE-STRAND BREAK REPAIR THERMOPHILIC MRE11, DNA KEYWDS 2 REPAIR DNA DOUBLE-STRAND BREAK REPAIR, DNA BINDING PROTEIN-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SHIBATA,D.MOIANI,A.S.ARVAI,J.PERRY,S.M.HARDING,M.GENOIS,R.MAITY, AUTHOR 2 S.ROSSUM-FIKKERT,A.KERTOKALIO,F.ROMOLI,A.ISMAIL,E.ISMALAJ, AUTHOR 3 E.PETRICCI,M.J.NEALE,R.G.BRISTOW,J.MASSON,C.WYMAN,P.A.JEGGO, AUTHOR 4 J.A.TAINER REVDAT 4 20-SEP-23 4O4K 1 REMARK LINK REVDAT 3 19-FEB-20 4O4K 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 FORMUL REVDAT 2 05-FEB-14 4O4K 1 JRNL REVDAT 1 08-JAN-14 4O4K 0 JRNL AUTH A.SHIBATA,D.MOIANI,A.S.ARVAI,J.PERRY,S.M.HARDING,M.M.GENOIS, JRNL AUTH 2 R.MAITY,S.VAN ROSSUM-FIKKERT,A.KERTOKALIO,F.ROMOLI,A.ISMAIL, JRNL AUTH 3 E.ISMALAJ,E.PETRICCI,M.J.NEALE,R.G.BRISTOW,J.Y.MASSON, JRNL AUTH 4 C.WYMAN,P.A.JEGGO,J.A.TAINER JRNL TITL DNA DOUBLE-STRAND BREAK REPAIR PATHWAY CHOICE IS DIRECTED BY JRNL TITL 2 DISTINCT MRE11 NUCLEASE ACTIVITIES. JRNL REF MOL.CELL V. 53 7 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24316220 JRNL DOI 10.1016/J.MOLCEL.2013.11.003 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 43542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4149 - 4.9348 0.97 3582 161 0.1685 0.1902 REMARK 3 2 4.9348 - 3.9183 1.00 3623 163 0.1548 0.2007 REMARK 3 3 3.9183 - 3.4234 0.99 3566 162 0.1842 0.2431 REMARK 3 4 3.4234 - 3.1105 0.99 3601 160 0.2141 0.2540 REMARK 3 5 3.1105 - 2.8877 0.98 3542 159 0.2282 0.2724 REMARK 3 6 2.8877 - 2.7175 0.97 3537 161 0.2236 0.2853 REMARK 3 7 2.7175 - 2.5814 0.95 3426 152 0.2307 0.3047 REMARK 3 8 2.5814 - 2.4691 0.95 3385 156 0.2327 0.3096 REMARK 3 9 2.4691 - 2.3740 0.92 3292 153 0.2215 0.2715 REMARK 3 10 2.3740 - 2.2921 0.89 3214 141 0.2269 0.3153 REMARK 3 11 2.2921 - 2.2205 0.77 2753 120 0.2504 0.3155 REMARK 3 12 2.2205 - 2.1570 0.64 2317 100 0.2500 0.2987 REMARK 3 13 2.1570 - 2.1002 0.51 1834 82 0.2677 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5304 REMARK 3 ANGLE : 1.237 7188 REMARK 3 CHIRALITY : 0.082 800 REMARK 3 PLANARITY : 0.005 925 REMARK 3 DIHEDRAL : 13.529 1962 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.9642 456.2856 19.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.2570 REMARK 3 T33: 0.2838 T12: 0.0488 REMARK 3 T13: 0.0054 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.1253 L22: 0.1936 REMARK 3 L33: 0.8086 L12: -0.0243 REMARK 3 L13: 0.1968 L23: -0.0930 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.0160 S13: 0.0843 REMARK 3 S21: -0.0454 S22: -0.0542 S23: -0.0059 REMARK 3 S31: 0.1265 S32: 0.0976 S33: -0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000084033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46357 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NZV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6, VAPOR DIFFUSION, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.57700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 VAL B 1 REMARK 465 ILE B 2 REMARK 465 ASN B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 131 CE NZ REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 SER A 143 OG REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 LEU A 146 CG CD1 CD2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ARG A 154 CZ NH1 NH2 REMARK 470 TYR A 189 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 192 CG1 CG2 CD1 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 GLN A 194 CG CD OE1 NE2 REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 278 NZ REMARK 470 LYS A 279 NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 100 CE NZ REMARK 470 LYS B 131 CE NZ REMARK 470 SER B 143 OG REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 LEU B 146 CG CD1 CD2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 ARG B 154 CD NE CZ NH1 NH2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 TYR B 189 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE B 192 CG1 CG2 CD1 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 GLN B 194 CG CD OE1 NE2 REMARK 470 ARG B 196 CD NE CZ NH1 NH2 REMARK 470 GLU B 197 CD OE1 OE2 REMARK 470 GLU B 246 CD OE1 OE2 REMARK 470 LYS B 278 NZ REMARK 470 ARG B 293 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 242 O HOH A 526 2.05 REMARK 500 O ILE A 236 O HOH A 526 2.09 REMARK 500 OG SER A 234 O HOH A 526 2.13 REMARK 500 NH2 ARG B 26 O MET B 314 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 25 -51.89 -126.01 REMARK 500 ARG A 26 90.92 -160.06 REMARK 500 ASP A 95 -66.46 -105.05 REMARK 500 LYS A 170 26.01 -79.98 REMARK 500 ASP A 173 -115.72 57.12 REMARK 500 HIS A 216 -29.58 110.70 REMARK 500 SER A 268 65.87 38.29 REMARK 500 SER A 307 51.69 -151.96 REMARK 500 ASP A 312 73.20 -67.10 REMARK 500 LEU B 7 108.64 -161.45 REMARK 500 SER B 25 -62.43 -108.98 REMARK 500 TRP B 96 108.25 -52.57 REMARK 500 PRO B 140 -163.59 -78.10 REMARK 500 SER B 143 -110.38 42.05 REMARK 500 GLU B 144 -113.11 59.66 REMARK 500 GLU B 172 -81.37 -92.14 REMARK 500 ASP B 173 -69.45 -99.41 REMARK 500 VAL B 208 32.33 -87.61 REMARK 500 HIS B 216 -22.15 113.72 REMARK 500 ALA B 249 -168.55 -119.29 REMARK 500 PRO B 296 39.28 -81.60 REMARK 500 GLU B 304 -61.43 -98.49 REMARK 500 ASP B 312 93.21 -50.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 529 DISTANCE = 8.40 ANGSTROMS REMARK 525 HOH A 530 DISTANCE = 6.68 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 14 OD1 REMARK 620 2 HIS A 16 NE2 109.0 REMARK 620 3 ASP A 58 OD2 77.8 102.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD2 REMARK 620 2 HIS A 180 NE2 94.0 REMARK 620 3 HIS A 216 ND1 120.5 108.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 14 OD1 REMARK 620 2 HIS B 16 NE2 100.6 REMARK 620 3 ASP B 58 OD1 85.9 99.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 58 OD1 REMARK 620 2 ASP B 58 OD2 50.8 REMARK 620 3 HIS B 180 NE2 98.8 73.7 REMARK 620 4 HIS B 216 ND1 111.0 156.2 97.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PK A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PK B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4NZV RELATED DB: PDB REMARK 900 RELATED ID: 4O43 RELATED DB: PDB REMARK 900 RELATED ID: 4O24 RELATED DB: PDB REMARK 900 RELATED ID: 4O5G RELATED DB: PDB DBREF 4O4K A 2 324 UNP Q9X1X0 Q9X1X0_THEMA 2 324 DBREF 4O4K B 2 324 UNP Q9X1X0 Q9X1X0_THEMA 2 324 SEQADV 4O4K MET A -11 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K GLY A -10 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K SER A -9 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K ASP A -8 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K LYS A -7 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K ILE A -6 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A -5 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A -4 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A -3 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A -2 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A -1 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS A 0 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K VAL A 1 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K MET B -11 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K GLY B -10 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K SER B -9 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K ASP B -8 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K LYS B -7 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K ILE B -6 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B -5 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B -4 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B -3 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B -2 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B -1 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K HIS B 0 UNP Q9X1X0 EXPRESSION TAG SEQADV 4O4K VAL B 1 UNP Q9X1X0 EXPRESSION TAG SEQRES 1 A 336 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 A 336 ILE ASN LEU LYS GLU LEU LYS ILE LEU HIS THR SER ASP SEQRES 3 A 336 TRP HIS LEU GLY VAL THR SER TRP THR SER SER ARG PRO SEQRES 4 A 336 VAL ASP ARG ARG GLU GLU LEU LYS LYS ALA LEU ASP LYS SEQRES 5 A 336 VAL VAL GLU GLU ALA GLU LYS ARG GLU VAL ASP LEU ILE SEQRES 6 A 336 LEU LEU THR GLY ASP LEU LEU HIS SER ARG ASN ASN PRO SEQRES 7 A 336 SER VAL VAL ALA LEU HIS ASP LEU LEU ASP TYR LEU LYS SEQRES 8 A 336 ARG MET MET ARG THR ALA PRO VAL VAL VAL LEU PRO GLY SEQRES 9 A 336 ASN HIS ASP TRP LYS GLY LEU LYS LEU PHE GLY ASN PHE SEQRES 10 A 336 VAL THR SER ILE SER SER ASP ILE THR PHE VAL MET SER SEQRES 11 A 336 PHE GLU PRO VAL ASP VAL GLU ALA LYS ARG GLY GLN LYS SEQRES 12 A 336 VAL ARG ILE LEU PRO PHE PRO TYR PRO ASP GLU SER GLU SEQRES 13 A 336 ALA LEU ARG LYS ASN GLU GLY ASP PHE ARG PHE PHE LEU SEQRES 14 A 336 GLU SER ARG LEU ASN LYS LEU TYR GLU GLU ALA LEU LYS SEQRES 15 A 336 LYS GLU ASP PHE ALA ILE PHE MET GLY HIS PHE THR VAL SEQRES 16 A 336 GLU GLY LEU ALA GLY TYR ALA GLY ILE GLU GLN GLY ARG SEQRES 17 A 336 GLU ILE ILE ILE ASN ARG ALA LEU ILE PRO SER VAL VAL SEQRES 18 A 336 ASP TYR ALA ALA LEU GLY HIS ILE HIS SER PHE ARG GLU SEQRES 19 A 336 ILE GLN LYS GLN PRO LEU THR ILE TYR PRO GLY SER LEU SEQRES 20 A 336 ILE ARG ILE ASP PHE GLY GLU GLU ALA ASP GLU LYS GLY SEQRES 21 A 336 ALA VAL PHE VAL GLU LEU LYS ARG GLY GLU PRO PRO ARG SEQRES 22 A 336 TYR GLU ARG ILE ASP ALA SER PRO LEU PRO LEU LYS THR SEQRES 23 A 336 LEU TYR TYR LYS LYS ILE ASP THR SER ALA LEU LYS SER SEQRES 24 A 336 ILE ARG ASP PHE CYS ARG ASN PHE PRO GLY TYR VAL ARG SEQRES 25 A 336 VAL VAL TYR GLU GLU ASP SER GLY ILE LEU PRO ASP LEU SEQRES 26 A 336 MET GLY GLU ILE ASP ASN LEU VAL LYS ILE GLU SEQRES 1 B 336 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS VAL SEQRES 2 B 336 ILE ASN LEU LYS GLU LEU LYS ILE LEU HIS THR SER ASP SEQRES 3 B 336 TRP HIS LEU GLY VAL THR SER TRP THR SER SER ARG PRO SEQRES 4 B 336 VAL ASP ARG ARG GLU GLU LEU LYS LYS ALA LEU ASP LYS SEQRES 5 B 336 VAL VAL GLU GLU ALA GLU LYS ARG GLU VAL ASP LEU ILE SEQRES 6 B 336 LEU LEU THR GLY ASP LEU LEU HIS SER ARG ASN ASN PRO SEQRES 7 B 336 SER VAL VAL ALA LEU HIS ASP LEU LEU ASP TYR LEU LYS SEQRES 8 B 336 ARG MET MET ARG THR ALA PRO VAL VAL VAL LEU PRO GLY SEQRES 9 B 336 ASN HIS ASP TRP LYS GLY LEU LYS LEU PHE GLY ASN PHE SEQRES 10 B 336 VAL THR SER ILE SER SER ASP ILE THR PHE VAL MET SER SEQRES 11 B 336 PHE GLU PRO VAL ASP VAL GLU ALA LYS ARG GLY GLN LYS SEQRES 12 B 336 VAL ARG ILE LEU PRO PHE PRO TYR PRO ASP GLU SER GLU SEQRES 13 B 336 ALA LEU ARG LYS ASN GLU GLY ASP PHE ARG PHE PHE LEU SEQRES 14 B 336 GLU SER ARG LEU ASN LYS LEU TYR GLU GLU ALA LEU LYS SEQRES 15 B 336 LYS GLU ASP PHE ALA ILE PHE MET GLY HIS PHE THR VAL SEQRES 16 B 336 GLU GLY LEU ALA GLY TYR ALA GLY ILE GLU GLN GLY ARG SEQRES 17 B 336 GLU ILE ILE ILE ASN ARG ALA LEU ILE PRO SER VAL VAL SEQRES 18 B 336 ASP TYR ALA ALA LEU GLY HIS ILE HIS SER PHE ARG GLU SEQRES 19 B 336 ILE GLN LYS GLN PRO LEU THR ILE TYR PRO GLY SER LEU SEQRES 20 B 336 ILE ARG ILE ASP PHE GLY GLU GLU ALA ASP GLU LYS GLY SEQRES 21 B 336 ALA VAL PHE VAL GLU LEU LYS ARG GLY GLU PRO PRO ARG SEQRES 22 B 336 TYR GLU ARG ILE ASP ALA SER PRO LEU PRO LEU LYS THR SEQRES 23 B 336 LEU TYR TYR LYS LYS ILE ASP THR SER ALA LEU LYS SER SEQRES 24 B 336 ILE ARG ASP PHE CYS ARG ASN PHE PRO GLY TYR VAL ARG SEQRES 25 B 336 VAL VAL TYR GLU GLU ASP SER GLY ILE LEU PRO ASP LEU SEQRES 26 B 336 MET GLY GLU ILE ASP ASN LEU VAL LYS ILE GLU HET MN A 401 1 HET MN A 402 1 HET 2PK A 403 15 HET MN B 401 1 HET MN B 402 1 HET 2PK B 403 15 HETNAM MN MANGANESE (II) ION HETNAM 2PK (5~{E})-2-AZANYLIDENE-5-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 2PK 1,3-THIAZOLIDIN-4-ONE FORMUL 3 MN 4(MN 2+) FORMUL 5 2PK 2(C10 H8 N2 O2 S) FORMUL 9 HOH *131(H2 O) HELIX 1 1 ARG A 30 GLU A 49 1 20 HELIX 2 2 SER A 67 ALA A 85 1 19 HELIX 3 3 LYS A 97 SER A 110 1 14 HELIX 4 4 ASN A 149 LYS A 170 1 22 HELIX 5 5 ASN A 201 ILE A 205 5 5 HELIX 6 6 ASP A 239 GLU A 243 5 5 HELIX 7 7 ASP A 281 PHE A 295 1 15 HELIX 8 8 ASP A 312 ILE A 317 1 6 HELIX 9 9 ARG B 30 ARG B 48 1 19 HELIX 10 10 SER B 67 ALA B 85 1 19 HELIX 11 11 LYS B 97 SER B 110 1 14 HELIX 12 12 ASN B 149 LYS B 170 1 22 HELIX 13 13 ASN B 201 ILE B 205 5 5 HELIX 14 14 ASP B 239 GLU B 243 5 5 HELIX 15 15 ASP B 281 PHE B 295 1 15 HELIX 16 16 ASP B 312 ILE B 317 1 6 SHEET 1 A 6 ILE A 113 PHE A 115 0 SHEET 2 A 6 VAL A 87 VAL A 89 1 N VAL A 89 O THR A 114 SHEET 3 A 6 LEU A 52 THR A 56 1 N LEU A 55 O VAL A 88 SHEET 4 A 6 GLU A 6 SER A 13 1 N LEU A 10 O LEU A 54 SHEET 5 A 6 GLY A 248 LYS A 255 -1 O VAL A 252 N ILE A 9 SHEET 6 A 6 ARG A 261 ASP A 266 -1 O ARG A 261 N GLU A 253 SHEET 1 B 2 THR A 20 SER A 21 0 SHEET 2 B 2 VAL A 28 ASP A 29 -1 O VAL A 28 N SER A 21 SHEET 1 C 6 VAL A 122 GLU A 125 0 SHEET 2 C 6 LYS A 131 PHE A 137 -1 O VAL A 132 N VAL A 124 SHEET 3 C 6 PHE A 174 HIS A 180 1 O PHE A 174 N ARG A 133 SHEET 4 C 6 TYR A 211 GLY A 215 1 O ALA A 213 N PHE A 177 SHEET 5 C 6 THR A 229 TYR A 231 1 O ILE A 230 N LEU A 214 SHEET 6 C 6 ARG A 221 GLN A 224 -1 N GLN A 224 O THR A 229 SHEET 1 D 2 THR A 182 VAL A 183 0 SHEET 2 D 2 ILE A 199 ILE A 200 1 O ILE A 200 N THR A 182 SHEET 1 E 3 LEU A 272 LYS A 279 0 SHEET 2 E 3 TYR A 298 GLU A 305 1 O ARG A 300 N LEU A 275 SHEET 3 E 3 LEU A 320 LYS A 322 1 O LYS A 322 N VAL A 301 SHEET 1 F 6 ILE B 113 PHE B 115 0 SHEET 2 F 6 VAL B 87 VAL B 89 1 N VAL B 89 O THR B 114 SHEET 3 F 6 LEU B 52 THR B 56 1 N LEU B 55 O VAL B 88 SHEET 4 F 6 GLU B 6 SER B 13 1 N LEU B 10 O LEU B 54 SHEET 5 F 6 GLY B 248 LYS B 255 -1 O VAL B 252 N ILE B 9 SHEET 6 F 6 ARG B 261 ASP B 266 -1 O GLU B 263 N PHE B 251 SHEET 1 G 2 THR B 20 SER B 21 0 SHEET 2 G 2 VAL B 28 ASP B 29 -1 O VAL B 28 N SER B 21 SHEET 1 H 6 VAL B 122 GLU B 125 0 SHEET 2 H 6 LYS B 131 PHE B 137 -1 O VAL B 132 N VAL B 124 SHEET 3 H 6 PHE B 174 HIS B 180 1 O ILE B 176 N LEU B 135 SHEET 4 H 6 TYR B 211 GLY B 215 1 O TYR B 211 N PHE B 177 SHEET 5 H 6 THR B 229 TYR B 231 1 O ILE B 230 N LEU B 214 SHEET 6 H 6 ARG B 221 GLN B 224 -1 N ILE B 223 O THR B 229 SHEET 1 I 2 THR B 182 VAL B 183 0 SHEET 2 I 2 ILE B 199 ILE B 200 1 O ILE B 200 N THR B 182 SHEET 1 J 3 LEU B 272 TYR B 277 0 SHEET 2 J 3 TYR B 298 TYR B 303 1 O ARG B 300 N LEU B 275 SHEET 3 J 3 LEU B 320 GLU B 324 1 O LYS B 322 N VAL B 301 LINK OD1 ASP A 14 MN MN A 402 1555 1555 2.47 LINK NE2 HIS A 16 MN MN A 402 1555 1555 2.76 LINK OD2 ASP A 58 MN MN A 401 1555 1555 2.30 LINK OD2 ASP A 58 MN MN A 402 1555 1555 2.69 LINK NE2 HIS A 180 MN MN A 401 1555 1555 2.55 LINK ND1 HIS A 216 MN MN A 401 1555 1555 2.00 LINK OD1 ASP B 14 MN MN B 402 1555 1555 2.61 LINK NE2 HIS B 16 MN MN B 402 1555 1555 2.75 LINK OD1 ASP B 58 MN MN B 401 1555 1555 2.48 LINK OD2 ASP B 58 MN MN B 401 1555 1555 2.59 LINK OD1 ASP B 58 MN MN B 402 1555 1555 2.53 LINK NE2 HIS B 180 MN MN B 401 1555 1555 2.80 LINK ND1 HIS B 216 MN MN B 401 1555 1555 2.07 CISPEP 1 ALA A 187 GLY A 188 0 -3.21 CISPEP 2 GLN A 226 PRO A 227 0 -2.71 CISPEP 3 ASP B 141 GLU B 142 0 7.49 CISPEP 4 GLU B 142 SER B 143 0 -0.79 CISPEP 5 ALA B 145 LEU B 146 0 5.25 CISPEP 6 ARG B 147 LYS B 148 0 3.01 CISPEP 7 TYR B 189 ALA B 190 0 2.55 CISPEP 8 ILE B 192 GLU B 193 0 4.30 CISPEP 9 GLN B 194 GLY B 195 0 6.70 CISPEP 10 GLN B 226 PRO B 227 0 -2.73 SITE 1 AC1 3 ASP A 58 HIS A 180 HIS A 216 SITE 1 AC2 5 ASP A 14 HIS A 16 ASP A 58 HIS A 216 SITE 2 AC2 5 HIS A 218 SITE 1 AC3 8 ASP A 58 LEU A 59 LEU A 60 ARG A 63 SITE 2 AC3 8 VAL A 89 ASN A 93 HIS A 94 LEU A 99 SITE 1 AC4 3 ASP B 58 HIS B 180 HIS B 216 SITE 1 AC5 5 ASP B 14 HIS B 16 ASP B 58 HIS B 216 SITE 2 AC5 5 HIS B 218 SITE 1 AC6 11 GLY B 57 ASP B 58 LEU B 59 LEU B 60 SITE 2 AC6 11 SER B 62 ARG B 63 VAL B 89 PRO B 91 SITE 3 AC6 11 GLY B 92 ASN B 93 HIS B 94 CRYST1 47.769 113.154 80.891 90.00 101.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020934 0.000000 0.004248 0.00000 SCALE2 0.000000 0.008838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012614 0.00000