HEADER ISOMERASE 19-DEC-13 4O53 TITLE CRYSTAL STRUCTURE OF TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE TITLE 2 ILE45-LEU MUTANT (TVAG_497370) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_497370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR ROSSETAII; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LARA-GONZALEZ,G.M.MONTERO-MORAN,P.ESTRELLA-HERNANDEZ,C.G.BENITEZ- AUTHOR 2 CARDOZA,L.G.BRIEBA REVDAT 3 28-FEB-24 4O53 1 REMARK SEQADV LINK REVDAT 2 07-MAR-18 4O53 1 REMARK REVDAT 1 24-DEC-14 4O53 0 JRNL AUTH S.LARA-GONZALEZ,G.M.MONTERO-MORAN,P.ESTRELLA-HERNANDEZ, JRNL AUTH 2 C.G.BENITEZ-CARDOZA,L.G.BRIEBA JRNL TITL ENGINEERING MUTANTS WITH ALTERED DIMER-MONOMER EQUILIBRIUM JRNL TITL 2 REVEAL THE EXISTENCE OF STABLE MONOMERIC TRIOSEPHOSPHATE JRNL TITL 3 ISOMERASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1396 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4112 - 3.9994 0.99 2392 154 0.1600 0.2176 REMARK 3 2 3.9994 - 3.1746 1.00 2304 146 0.1659 0.1882 REMARK 3 3 3.1746 - 2.7734 1.00 2260 145 0.1755 0.2197 REMARK 3 4 2.7734 - 2.5198 0.99 2240 143 0.1715 0.2500 REMARK 3 5 2.5198 - 2.3392 0.99 2212 141 0.1673 0.2364 REMARK 3 6 2.3392 - 2.2013 0.98 2219 142 0.1505 0.2258 REMARK 3 7 2.2013 - 2.0910 0.98 2184 139 0.1564 0.2314 REMARK 3 8 2.0910 - 2.0000 0.96 2141 137 0.1654 0.2351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1935 REMARK 3 ANGLE : 1.334 2611 REMARK 3 CHIRALITY : 0.088 298 REMARK 3 PLANARITY : 0.007 341 REMARK 3 DIHEDRAL : 12.291 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:17) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9736 23.5440 -15.0934 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1797 REMARK 3 T33: 0.1458 T12: 0.0065 REMARK 3 T13: -0.0141 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 0.2786 L22: 0.1333 REMARK 3 L33: 0.5393 L12: -0.0674 REMARK 3 L13: -0.1742 L23: -0.1936 REMARK 3 S TENSOR REMARK 3 S11: 0.0374 S12: 0.0507 S13: 0.0085 REMARK 3 S21: -0.0561 S22: -0.2673 S23: 0.2540 REMARK 3 S31: -0.0728 S32: -0.1609 S33: -0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:26) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0130 31.5342 -13.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.1623 T22: 0.2337 REMARK 3 T33: 0.1985 T12: 0.0520 REMARK 3 T13: -0.0075 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1679 L22: 0.1637 REMARK 3 L33: 0.1013 L12: 0.0430 REMARK 3 L13: 0.0205 L23: -0.1131 REMARK 3 S TENSOR REMARK 3 S11: -0.0913 S12: 0.3344 S13: 0.2638 REMARK 3 S21: -0.0686 S22: -0.0156 S23: 0.0620 REMARK 3 S31: -0.1716 S32: -0.1418 S33: -0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 27:35) REMARK 3 ORIGIN FOR THE GROUP (A): -25.8797 18.1364 -23.3363 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.3262 REMARK 3 T33: 0.2392 T12: 0.0080 REMARK 3 T13: -0.0331 T23: -0.0900 REMARK 3 L TENSOR REMARK 3 L11: 0.0356 L22: 0.0881 REMARK 3 L33: 0.4314 L12: -0.0486 REMARK 3 L13: 0.1046 L23: -0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.2321 S13: -0.2759 REMARK 3 S21: -0.0295 S22: -0.0239 S23: 0.2737 REMARK 3 S31: 0.3448 S32: -0.2584 S33: 0.0057 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 36:98) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9189 20.7197 -4.5600 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.1197 REMARK 3 T33: 0.1188 T12: -0.0118 REMARK 3 T13: 0.0140 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.1647 L22: 0.4261 REMARK 3 L33: 0.7857 L12: -0.1069 REMARK 3 L13: -0.0312 L23: 0.5046 REMARK 3 S TENSOR REMARK 3 S11: -0.0231 S12: 0.1006 S13: 0.0040 REMARK 3 S21: 0.1008 S22: -0.0532 S23: 0.0846 REMARK 3 S31: 0.0570 S32: -0.1140 S33: 0.0004 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 99:118) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9018 16.8611 -1.8309 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1412 REMARK 3 T33: 0.1562 T12: 0.0123 REMARK 3 T13: 0.0121 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.3942 L22: 0.4481 REMARK 3 L33: 0.5882 L12: -0.0969 REMARK 3 L13: 0.2637 L23: 0.2438 REMARK 3 S TENSOR REMARK 3 S11: -0.1511 S12: -0.0069 S13: 0.1236 REMARK 3 S21: 0.0534 S22: 0.0868 S23: -0.2020 REMARK 3 S31: 0.1535 S32: 0.1070 S33: -0.0010 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 119:133) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0386 17.6113 -13.7628 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.1482 REMARK 3 T33: 0.1404 T12: 0.0035 REMARK 3 T13: -0.0153 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.2289 L22: 0.2424 REMARK 3 L33: 0.6034 L12: 0.0355 REMARK 3 L13: 0.3564 L23: 0.1661 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.0912 S13: -0.1470 REMARK 3 S21: 0.0771 S22: -0.0808 S23: -0.0314 REMARK 3 S31: 0.0427 S32: 0.0797 S33: 0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 134:149) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2457 13.7399 -15.6443 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.2390 REMARK 3 T33: 0.3112 T12: 0.0181 REMARK 3 T13: -0.0086 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.2958 L22: 0.1684 REMARK 3 L33: 1.2130 L12: -0.1790 REMARK 3 L13: -0.5529 L23: 0.4404 REMARK 3 S TENSOR REMARK 3 S11: -0.1773 S12: 0.1852 S13: -0.3830 REMARK 3 S21: 0.1069 S22: 0.1979 S23: -0.0784 REMARK 3 S31: 0.2193 S32: 0.2786 S33: 0.0271 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 150:195) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9834 13.0395 -18.1364 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1105 REMARK 3 T33: 0.1486 T12: 0.0194 REMARK 3 T13: 0.0097 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 0.7824 L22: 0.6618 REMARK 3 L33: 0.7683 L12: -0.0643 REMARK 3 L13: 0.1664 L23: 0.6280 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: 0.0817 S13: -0.0548 REMARK 3 S21: 0.0514 S22: 0.0784 S23: -0.0808 REMARK 3 S31: 0.0983 S32: 0.0267 S33: 0.0006 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 196:206) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6838 1.5963 -16.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.2563 T22: 0.1489 REMARK 3 T33: 0.2006 T12: 0.0257 REMARK 3 T13: 0.0473 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2169 L22: 0.1295 REMARK 3 L33: 0.8555 L12: -0.1636 REMARK 3 L13: 0.3098 L23: -0.1730 REMARK 3 S TENSOR REMARK 3 S11: -0.1989 S12: -0.1984 S13: -0.2066 REMARK 3 S21: 0.2215 S22: 0.2219 S23: 0.0534 REMARK 3 S31: 0.5261 S32: 0.1004 S33: 0.0391 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 207:237) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5760 19.4391 -24.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1655 REMARK 3 T33: 0.1562 T12: 0.0172 REMARK 3 T13: 0.0028 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1453 L22: 0.0626 REMARK 3 L33: 0.2621 L12: 0.1020 REMARK 3 L13: 0.0019 L23: 0.0095 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: 0.2170 S13: 0.0097 REMARK 3 S21: -0.0485 S22: -0.0467 S23: 0.0115 REMARK 3 S31: -0.0362 S32: -0.0273 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 238:243) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0751 25.8118 -24.4343 REMARK 3 T TENSOR REMARK 3 T11: 0.2076 T22: 0.2437 REMARK 3 T33: 0.1531 T12: 0.0178 REMARK 3 T13: -0.0289 T23: -0.0536 REMARK 3 L TENSOR REMARK 3 L11: 0.6068 L22: 0.6561 REMARK 3 L33: 0.2647 L12: 0.5634 REMARK 3 L13: 0.0528 L23: 0.2325 REMARK 3 S TENSOR REMARK 3 S11: 0.0071 S12: 0.3006 S13: 0.1630 REMARK 3 S21: -0.3705 S22: -0.0722 S23: 0.3092 REMARK 3 S31: -0.3171 S32: 0.3054 S33: 0.0127 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 244:252) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5769 14.6371 -28.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.2240 REMARK 3 T33: 0.1241 T12: -0.0353 REMARK 3 T13: 0.0075 T23: -0.0803 REMARK 3 L TENSOR REMARK 3 L11: 0.0279 L22: 0.4681 REMARK 3 L33: 0.6541 L12: -0.1087 REMARK 3 L13: 0.1311 L23: -0.5512 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.2346 S13: -0.2049 REMARK 3 S21: -0.2113 S22: 0.0861 S23: -0.0385 REMARK 3 S31: 0.1953 S32: -0.1835 S33: 0.0495 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5419 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19121 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 55.954 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.15100 REMARK 200 R SYM FOR SHELL (I) : 0.15100 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 18% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.97700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.57850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.97700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.57850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 55.95400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -145.86 56.78 REMARK 500 ARG A 55 131.13 -37.08 REMARK 500 ASP A 99 -72.43 -83.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 136 O REMARK 620 2 HOH A 513 O 107.3 REMARK 620 3 HOH A 554 O 68.7 84.9 REMARK 620 4 HOH A 571 O 74.2 78.7 132.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 156 O REMARK 620 2 ASP A 159 OD1 77.6 REMARK 620 3 ASP A 159 OD2 128.0 52.7 REMARK 620 4 HOH A 548 O 72.1 142.3 159.2 REMARK 620 5 HOH A 555 O 87.7 106.8 92.6 94.0 REMARK 620 6 HOH A 557 O 106.4 94.8 93.2 73.4 156.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 222 O REMARK 620 2 CYS A 224 O 93.4 REMARK 620 3 VAL A 227 O 111.2 95.9 REMARK 620 4 SER A 251 OG 80.0 157.3 106.8 REMARK 620 5 HOH A 560 O 147.7 90.7 100.2 84.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4V RELATED DB: PDB REMARK 900 RELATED ID: 4O4W RELATED DB: PDB REMARK 900 RELATED ID: 4O50 RELATED DB: PDB REMARK 900 RELATED ID: 4O52 RELATED DB: PDB REMARK 900 RELATED ID: 4O54 RELATED DB: PDB REMARK 900 RELATED ID: 4O57 RELATED DB: PDB REMARK 900 RELATED ID: 3QSR RELATED DB: PDB DBREF 4O53 A 1 252 UNP A2EGX9 A2EGX9_TRIVA 1 252 SEQADV 4O53 LEU A 45 UNP A2EGX9 ILE 45 ENGINEERED MUTATION SEQRES 1 A 252 MET ARG THR PHE PHE VAL GLY GLY ASN TRP LYS ALA ASN SEQRES 2 A 252 PRO LYS THR VAL GLU GLU ALA GLU LYS LEU ILE GLU MET SEQRES 3 A 252 LEU ASN GLY ALA LYS VAL GLU GLY ASN VAL GLU VAL VAL SEQRES 4 A 252 VAL ALA ALA PRO PHE LEU PHE LEU PRO THR LEU GLN GLN SEQRES 5 A 252 LYS LEU ARG LYS ASP TRP LYS VAL SER ALA GLU ASN VAL SEQRES 6 A 252 PHE THR LYS PRO ASN GLY ALA PHE THR GLY GLU VAL THR SEQRES 7 A 252 VAL PRO MET ILE LYS SER PHE GLY ILE GLU TRP THR ILE SEQRES 8 A 252 LEU GLY HIS SER GLU ARG ARG ASP ILE LEU LYS GLU ASP SEQRES 9 A 252 ASP GLU PHE LEU ALA ALA LYS ALA LYS PHE ALA LEU GLU SEQRES 10 A 252 ASN GLY MET LYS ILE ILE TYR CYS CYS GLY GLU HIS LEU SEQRES 11 A 252 SER GLU ARG GLU ALA GLY LYS ALA SER GLU PHE VAL SER SEQRES 12 A 252 ALA GLN ILE GLU LYS MET ILE PRO ALA ILE PRO ALA GLY SEQRES 13 A 252 LYS TRP ASP ASP VAL VAL ILE ALA TYR GLU PRO ILE TRP SEQRES 14 A 252 ALA ILE GLY THR GLY LYS VAL ALA SER THR GLN ASP ALA SEQRES 15 A 252 GLN GLU MET CYS LYS VAL ILE ARG ASP ILE LEU ALA ALA SEQRES 16 A 252 LYS VAL GLY ALA ASP ILE ALA ASN LYS VAL ARG ILE LEU SEQRES 17 A 252 TYR GLY GLY SER VAL LYS PRO ASN ASN CYS ASN GLU LEU SEQRES 18 A 252 ALA ALA CYS PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY SEQRES 19 A 252 ALA SER LEU GLU PRO GLY PHE ILE ASN ILE VAL ASN SER SEQRES 20 A 252 ASN VAL HIS SER LYS HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HETNAM NA SODIUM ION FORMUL 2 NA 3(NA 1+) FORMUL 5 HOH *181(H2 O) HELIX 1 1 THR A 16 GLY A 29 1 14 HELIX 2 2 PRO A 43 LEU A 45 5 3 HELIX 3 3 PHE A 46 LEU A 54 1 9 HELIX 4 4 THR A 78 PHE A 85 1 8 HELIX 5 5 HIS A 94 ILE A 100 1 7 HELIX 6 6 ASP A 104 ASN A 118 1 15 HELIX 7 7 HIS A 129 GLY A 136 1 8 HELIX 8 8 LYS A 137 ILE A 150 1 14 HELIX 9 9 PRO A 151 ILE A 153 5 3 HELIX 10 10 LYS A 157 ASP A 159 5 3 HELIX 11 11 PRO A 167 ILE A 171 5 5 HELIX 12 12 SER A 178 GLY A 198 1 21 HELIX 13 13 GLY A 198 VAL A 205 1 8 HELIX 14 14 ASN A 217 CYS A 224 1 8 HELIX 15 15 GLY A 233 PRO A 239 5 7 HELIX 16 16 GLY A 240 ASN A 246 1 7 HELIX 17 17 SER A 247 SER A 251 5 5 SHEET 1 A 9 PHE A 4 ASN A 9 0 SHEET 2 A 9 VAL A 36 ALA A 41 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 LYS A 59 ALA A 62 1 O LYS A 59 N VAL A 40 SHEET 4 A 9 TRP A 89 LEU A 92 1 O TRP A 89 N ALA A 62 SHEET 5 A 9 LYS A 121 CYS A 126 1 O ILE A 123 N LEU A 92 SHEET 6 A 9 VAL A 161 TYR A 165 1 O VAL A 162 N TYR A 124 SHEET 7 A 9 ARG A 206 TYR A 209 1 O LEU A 208 N ILE A 163 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 PHE A 4 ASN A 9 1 N GLY A 7 O PHE A 230 LINK O GLY A 136 NA NA A 303 1555 1555 2.40 LINK O GLY A 156 NA NA A 302 1555 1555 2.23 LINK OD1 ASP A 159 NA NA A 302 1555 1555 2.40 LINK OD2 ASP A 159 NA NA A 302 1555 1555 2.52 LINK O ALA A 222 NA NA A 301 1555 1555 2.37 LINK O CYS A 224 NA NA A 301 1555 1555 2.34 LINK O VAL A 227 NA NA A 301 1555 1555 2.32 LINK OG SER A 251 NA NA A 301 1555 1555 2.43 LINK NA NA A 301 O HOH A 560 1555 1555 2.49 LINK NA NA A 302 O HOH A 548 1555 1555 2.40 LINK NA NA A 302 O HOH A 555 1555 1555 2.35 LINK NA NA A 302 O HOH A 557 1555 1555 2.35 LINK NA NA A 303 O HOH A 513 1555 1555 2.35 LINK NA NA A 303 O HOH A 554 1555 1555 2.54 LINK NA NA A 303 O HOH A 571 1555 1555 2.45 CISPEP 1 ASN A 13 PRO A 14 0 -8.31 SITE 1 AC1 5 ALA A 222 CYS A 224 VAL A 227 SER A 251 SITE 2 AC1 5 HOH A 560 SITE 1 AC2 5 GLY A 156 ASP A 159 HOH A 548 HOH A 555 SITE 2 AC2 5 HOH A 557 SITE 1 AC3 4 GLY A 136 HOH A 513 HOH A 554 HOH A 571 CRYST1 46.891 55.954 105.157 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021326 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009510 0.00000