HEADER ISOMERASE 19-DEC-13 4O57 TITLE CRYSTAL STRUCTURE OF TRICHOMONAS VAGINALIS TRIOSEPHOSPHATE ISOMERASE TITLE 2 ILE45-TYR MUTANT (TVAG_497370) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; SOURCE 3 ORGANISM_TAXID: 5722; SOURCE 4 GENE: TVAG_497370; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR ROSSETAII; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS TIM BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LARA-GONZALEZ,P.ESTRELLA-HERNANDEZ,G.M.MONTERO-MORAN,C.G.BENITEZ- AUTHOR 2 CARDOZA,L.G.BRIEBA REVDAT 1 24-DEC-14 4O57 0 JRNL AUTH S.LARA-GONZALEZ,P.ESTRELLA-HERNANDEZ,G.M.MONTERO-MORAN, JRNL AUTH 2 C.G.BENITEZ-CARDOZA,L.G.BRIEBA JRNL TITL ENGINEERING MUTANTS WITH ALTERED DIMER-MONOMER EQUILIBRIUM JRNL TITL 2 REVEAL THE EXISTENCE OF STABLE MONOMERIC TRIOSEPHOSPHATE JRNL TITL 3 ISOMERASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1396) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3356 - 3.8613 0.99 2743 144 0.1754 0.2153 REMARK 3 2 3.8613 - 3.0654 1.00 2642 139 0.1755 0.1904 REMARK 3 3 3.0654 - 2.6780 1.00 2616 138 0.1868 0.2158 REMARK 3 4 2.6780 - 2.4333 1.00 2602 137 0.1760 0.1917 REMARK 3 5 2.4333 - 2.2589 1.00 2562 135 0.1710 0.2070 REMARK 3 6 2.2589 - 2.1257 1.00 2588 136 0.1655 0.2061 REMARK 3 7 2.1257 - 2.0193 1.00 2559 135 0.1768 0.2286 REMARK 3 8 2.0193 - 1.9314 1.00 2554 134 0.1733 0.1889 REMARK 3 9 1.9314 - 1.8570 1.00 2581 136 0.1799 0.1962 REMARK 3 10 1.8570 - 1.7930 0.92 2336 123 0.2082 0.2423 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1890 REMARK 3 ANGLE : 1.442 2565 REMARK 3 CHIRALITY : 0.088 291 REMARK 3 PLANARITY : 0.008 336 REMARK 3 DIHEDRAL : 14.785 661 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9276 -17.8056 20.8627 REMARK 3 T TENSOR REMARK 3 T11: 0.1863 T22: 0.1849 REMARK 3 T33: 0.2127 T12: 0.0256 REMARK 3 T13: 0.0772 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 0.5661 L22: 0.2034 REMARK 3 L33: 0.6873 L12: 0.0446 REMARK 3 L13: 0.1955 L23: -0.3404 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: -0.0885 S13: -0.2539 REMARK 3 S21: -0.2837 S22: -0.0456 S23: -0.2313 REMARK 3 S31: 0.1731 S32: 0.3832 S33: 0.0433 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 8:35) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7942 -0.9138 16.0779 REMARK 3 T TENSOR REMARK 3 T11: 0.2426 T22: 0.2729 REMARK 3 T33: 0.3179 T12: -0.0164 REMARK 3 T13: 0.0202 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 1.2329 L22: 0.8415 REMARK 3 L33: 0.7253 L12: 0.2594 REMARK 3 L13: 0.3314 L23: 0.6715 REMARK 3 S TENSOR REMARK 3 S11: -0.1103 S12: -0.0362 S13: 0.3336 REMARK 3 S21: -0.0500 S22: -0.0771 S23: -0.1926 REMARK 3 S31: -0.3604 S32: 0.2069 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 36:66) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6564 -6.6148 8.6046 REMARK 3 T TENSOR REMARK 3 T11: 0.2587 T22: 0.2704 REMARK 3 T33: 0.1887 T12: 0.0253 REMARK 3 T13: 0.0667 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 1.3390 L22: 1.6772 REMARK 3 L33: 0.8866 L12: 0.4107 REMARK 3 L13: -0.6651 L23: 0.5603 REMARK 3 S TENSOR REMARK 3 S11: 0.0112 S12: 0.3599 S13: 0.1546 REMARK 3 S21: -0.4839 S22: -0.0673 S23: 0.0766 REMARK 3 S31: -0.1244 S32: 0.1475 S33: 0.0125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 74:88) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2915 -8.4836 -2.6511 REMARK 3 T TENSOR REMARK 3 T11: 0.9034 T22: 0.5280 REMARK 3 T33: 0.5389 T12: 0.1982 REMARK 3 T13: 0.2193 T23: 0.1044 REMARK 3 L TENSOR REMARK 3 L11: 5.3934 L22: 1.1682 REMARK 3 L33: 0.2858 L12: 2.5153 REMARK 3 L13: 1.2825 L23: 0.5765 REMARK 3 S TENSOR REMARK 3 S11: 0.4598 S12: 1.0456 S13: 1.4341 REMARK 3 S21: -0.8720 S22: -0.4942 S23: 0.2945 REMARK 3 S31: -0.1999 S32: 0.6616 S33: -0.5188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 89:119) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8820 -10.7949 4.8100 REMARK 3 T TENSOR REMARK 3 T11: 0.6016 T22: 0.4921 REMARK 3 T33: 0.3205 T12: 0.1403 REMARK 3 T13: -0.1050 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 1.7097 L22: 6.0540 REMARK 3 L33: 3.1033 L12: 2.0203 REMARK 3 L13: 0.0522 L23: 3.3482 REMARK 3 S TENSOR REMARK 3 S11: 0.1846 S12: 0.5201 S13: 0.4938 REMARK 3 S21: -1.3914 S22: -0.7692 S23: 1.3529 REMARK 3 S31: -0.6452 S32: -1.0894 S33: -0.1603 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 120:140) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6665 -11.1375 15.9058 REMARK 3 T TENSOR REMARK 3 T11: 0.1814 T22: 0.1760 REMARK 3 T33: 0.2337 T12: -0.0174 REMARK 3 T13: 0.0186 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8292 L22: 0.9255 REMARK 3 L33: 1.2779 L12: -0.0987 REMARK 3 L13: 0.5526 L23: -0.4062 REMARK 3 S TENSOR REMARK 3 S11: 0.1710 S12: 0.1173 S13: -0.0716 REMARK 3 S21: -0.2920 S22: -0.0610 S23: 0.2733 REMARK 3 S31: 0.0765 S32: -0.2467 S33: 0.0130 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 141:167) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5205 -18.9656 11.6280 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.2198 REMARK 3 T33: 0.2407 T12: 0.0267 REMARK 3 T13: -0.0398 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.8037 L22: 0.6124 REMARK 3 L33: 0.6514 L12: -0.0516 REMARK 3 L13: 0.0992 L23: -0.4339 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: 0.2338 S13: -0.2354 REMARK 3 S21: -0.6326 S22: -0.1990 S23: 0.3285 REMARK 3 S31: 0.0195 S32: -0.1212 S33: 0.0010 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 168:192) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9084 -11.5037 24.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1685 REMARK 3 T33: 0.2539 T12: 0.0011 REMARK 3 T13: 0.0378 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 0.4762 L22: 0.4781 REMARK 3 L33: 0.8257 L12: -0.2985 REMARK 3 L13: -0.5236 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0315 S13: -0.0239 REMARK 3 S21: -0.1236 S22: 0.1134 S23: 0.3259 REMARK 3 S31: -0.0024 S32: -0.0802 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 193:236) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5448 -15.4454 22.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1702 REMARK 3 T33: 0.1517 T12: -0.0025 REMARK 3 T13: 0.0362 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.2349 L22: 0.8203 REMARK 3 L33: 1.6282 L12: -0.1444 REMARK 3 L13: -0.4182 L23: -0.8742 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: -0.0717 S13: -0.0057 REMARK 3 S21: -0.0546 S22: -0.0156 S23: -0.0180 REMARK 3 S31: 0.0780 S32: -0.0069 S33: -0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 237:252) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2836 -8.4453 26.2881 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.2358 REMARK 3 T33: 0.1759 T12: -0.0254 REMARK 3 T13: 0.0200 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.0928 L22: 0.2448 REMARK 3 L33: 1.1063 L12: -0.0134 REMARK 3 L13: 0.2941 L23: 0.3517 REMARK 3 S TENSOR REMARK 3 S11: 0.0968 S12: -0.2479 S13: 0.0144 REMARK 3 S21: 0.1962 S22: -0.2831 S23: 0.0330 REMARK 3 S31: -0.2770 S32: 0.4092 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 35.436 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : 0.33200 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 CITRATE, 30% PEG 4000, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.17300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.15400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.17300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 67 REMARK 465 LYS A 68 REMARK 465 PRO A 69 REMARK 465 ASN A 70 REMARK 465 GLY A 71 REMARK 465 ALA A 72 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 83 CB CG CD CE NZ REMARK 470 SER A 84 CB OG REMARK 470 PHE A 85 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 ILE A 100 CG1 CG2 CD1 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 252 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -140.99 56.20 REMARK 500 PRO A 14 -167.19 -76.56 REMARK 500 ARG A 55 126.00 -38.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 222 O REMARK 620 2 HOH A 412 O 154.9 REMARK 620 3 VAL A 227 O 108.4 94.3 REMARK 620 4 CSO A 224 O 96.5 92.6 93.8 REMARK 620 5 HOH A 475 O 96.3 62.7 154.7 78.0 REMARK 620 6 SER A 251 OG 82.8 81.2 104.2 161.3 83.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O4V RELATED DB: PDB REMARK 900 RELATED ID: 4O4W RELATED DB: PDB REMARK 900 RELATED ID: 4O50 RELATED DB: PDB REMARK 900 RELATED ID: 4O52 RELATED DB: PDB REMARK 900 RELATED ID: 4O53 RELATED DB: PDB REMARK 900 RELATED ID: 4O54 RELATED DB: PDB REMARK 900 RELATED ID: 3QSR RELATED DB: PDB DBREF 4O57 A 1 252 UNP A2EGX9 A2EGX9_TRIVA 1 252 SEQADV 4O57 TYR A 45 UNP A2EGX9 ILE 45 ENGINEERED MUTATION SEQRES 1 A 252 MET ARG THR PHE PHE VAL GLY GLY ASN TRP LYS ALA ASN SEQRES 2 A 252 PRO LYS THR VAL GLU GLU ALA GLU LYS LEU ILE GLU MET SEQRES 3 A 252 LEU ASN GLY ALA LYS VAL GLU GLY ASN VAL GLU VAL VAL SEQRES 4 A 252 VAL ALA ALA PRO PHE TYR PHE LEU PRO THR LEU GLN GLN SEQRES 5 A 252 LYS LEU ARG LYS ASP TRP LYS VAL SER ALA GLU ASN VAL SEQRES 6 A 252 PHE THR LYS PRO ASN GLY ALA PHE THR GLY GLU VAL THR SEQRES 7 A 252 VAL PRO MET ILE LYS SER PHE GLY ILE GLU TRP THR ILE SEQRES 8 A 252 LEU GLY HIS SER GLU ARG ARG ASP ILE LEU LYS GLU ASP SEQRES 9 A 252 ASP GLU PHE LEU ALA ALA LYS ALA LYS PHE ALA LEU GLU SEQRES 10 A 252 ASN GLY MET LYS ILE ILE TYR CYS CYS GLY GLU HIS LEU SEQRES 11 A 252 SER GLU ARG GLU ALA GLY LYS ALA SER GLU PHE VAL SER SEQRES 12 A 252 ALA GLN ILE GLU LYS MET ILE PRO ALA ILE PRO ALA GLY SEQRES 13 A 252 LYS TRP ASP ASP VAL VAL ILE ALA TYR GLU PRO ILE TRP SEQRES 14 A 252 ALA ILE GLY THR GLY LYS VAL ALA SER THR GLN ASP ALA SEQRES 15 A 252 GLN GLU MET CYS LYS VAL ILE ARG ASP ILE LEU ALA ALA SEQRES 16 A 252 LYS VAL GLY ALA ASP ILE ALA ASN LYS VAL ARG ILE LEU SEQRES 17 A 252 TYR GLY GLY SER VAL LYS PRO ASN ASN CYS ASN GLU LEU SEQRES 18 A 252 ALA ALA CSO PRO ASP VAL ASP GLY PHE LEU VAL GLY GLY SEQRES 19 A 252 ALA SER LEU GLU PRO GLY PHE ILE ASN ILE VAL ASN SER SEQRES 20 A 252 ASN VAL HIS SER LYS MODRES 4O57 CSO A 224 CYS S-HYDROXYCYSTEINE HET CSO A 224 12 HET NA A 301 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM NA SODIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 NA NA 1+ FORMUL 3 HOH *100(H2 O) HELIX 1 1 THR A 16 GLY A 29 1 14 HELIX 2 2 PRO A 43 TYR A 45 5 3 HELIX 3 3 PHE A 46 LEU A 54 1 9 HELIX 4 4 THR A 78 GLY A 86 1 9 HELIX 5 5 HIS A 94 LYS A 102 1 9 HELIX 6 6 ASP A 104 ASN A 118 1 15 HELIX 7 7 HIS A 129 ALA A 135 1 7 HELIX 8 8 LYS A 137 ILE A 150 1 14 HELIX 9 9 PRO A 151 ILE A 153 5 3 HELIX 10 10 LYS A 157 ASP A 159 5 3 HELIX 11 11 PRO A 167 ILE A 171 5 5 HELIX 12 12 SER A 178 GLY A 198 1 21 HELIX 13 13 GLY A 198 VAL A 205 1 8 HELIX 14 14 ASN A 217 ALA A 223 1 7 HELIX 15 15 GLY A 233 PRO A 239 5 7 HELIX 16 16 GLY A 240 ASN A 246 1 7 HELIX 17 17 SER A 247 SER A 251 5 5 SHEET 1 A 9 PHE A 4 ASN A 9 0 SHEET 2 A 9 VAL A 36 ALA A 41 1 O ALA A 41 N GLY A 8 SHEET 3 A 9 LYS A 59 ALA A 62 1 O SER A 61 N VAL A 40 SHEET 4 A 9 TRP A 89 LEU A 92 1 O TRP A 89 N ALA A 62 SHEET 5 A 9 LYS A 121 CYS A 126 1 O CYS A 125 N LEU A 92 SHEET 6 A 9 VAL A 161 TYR A 165 1 O VAL A 162 N TYR A 124 SHEET 7 A 9 ARG A 206 TYR A 209 1 O LEU A 208 N ILE A 163 SHEET 8 A 9 GLY A 229 VAL A 232 1 O GLY A 229 N TYR A 209 SHEET 9 A 9 PHE A 4 ASN A 9 1 N GLY A 7 O VAL A 232 LINK C ALA A 223 N CSO A 224 1555 1555 1.34 LINK C CSO A 224 N PRO A 225 1555 1555 1.34 LINK O ALA A 222 NA NA A 301 1555 1555 2.27 LINK NA NA A 301 O HOH A 412 1555 1555 2.30 LINK O VAL A 227 NA NA A 301 1555 1555 2.31 LINK O CSO A 224 NA NA A 301 1555 1555 2.33 LINK NA NA A 301 O HOH A 475 1555 1555 2.44 LINK OG SER A 251 NA NA A 301 1555 1555 2.45 CISPEP 1 ASN A 13 PRO A 14 0 -13.53 SITE 1 AC1 6 ALA A 222 CSO A 224 VAL A 227 SER A 251 SITE 2 AC1 6 HOH A 412 HOH A 475 CRYST1 47.285 56.346 106.308 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009407 0.00000