data_4O5E # _entry.id 4O5E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4O5E pdb_00004o5e 10.2210/pdb4o5e/pdb NDB NA2819 ? ? RCSB RCSB084063 ? ? WWPDB D_1000084063 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2014-08-13 3 'Structure model' 1 2 2015-05-20 4 'Structure model' 1 3 2015-05-27 5 'Structure model' 1 4 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Source and taxonomy' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.value' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4O5E _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-12-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ISB . unspecified PDB 1BPX . unspecified PDB 4O5C . unspecified PDB 4O5K . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Koag, M.C.' 1 'Lee, S.' 2 # _citation.id primary _citation.title ;Transition-state destabilization reveals how human DNA polymerase beta proceeds across the chemically unstable lesion N7-methylguanine. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 42 _citation.page_first 8755 _citation.page_last 8766 _citation.year 2014 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24966350 _citation.pdbx_database_id_DOI 10.1093/nar/gku554 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Koag, M.C.' 1 ? primary 'Kou, Y.' 2 ? primary 'Ouzon-Shubeita, H.' 3 ? primary 'Lee, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase beta' 37536.770 1 '2.7.7.7, 4.2.99.-' ? 'DNA polymerase beta' ? 2 polymer syn ;DNA (5'-D(*CP*CP*GP*AP*CP*(FMG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') ; 4877.169 1 ? ? 'template DNA' template 3 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3') ; 3085.029 1 ? ? 'up primer DNA' 'up primer' 4 polymer syn ;DNA (5'-D(P*GP*TP*CP*GP*G)-3') ; 1536.035 1 ? ? 'down primer DNA' 'down primer' 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 7 non-polymer syn "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine" 481.184 1 ? ? ? ? 8 water nat water 18.015 71 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLE KIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEV KKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKND EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWK YREPKDRSE ; ;PQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLE KIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEV KKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKND EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWK YREPKDRSE ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DG)(DA)(DC)(FMG)(DT)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC)' CCGACGTCGCATCAGC T ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DA)' GCTGATGCGA P ? 4 polydeoxyribonucleotide no no '(DG)(DT)(DC)(DG)(DG)' GTCGG D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MAGNESIUM ION' MG 6 'SODIUM ION' NA 7 "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine" 1FZ 8 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 GLU n 1 4 THR n 1 5 LEU n 1 6 ASN n 1 7 GLY n 1 8 GLY n 1 9 ILE n 1 10 THR n 1 11 ASP n 1 12 MET n 1 13 LEU n 1 14 THR n 1 15 GLU n 1 16 LEU n 1 17 ALA n 1 18 ASN n 1 19 PHE n 1 20 GLU n 1 21 LYS n 1 22 ASN n 1 23 VAL n 1 24 SER n 1 25 GLN n 1 26 ALA n 1 27 ILE n 1 28 HIS n 1 29 LYS n 1 30 TYR n 1 31 ASN n 1 32 ALA n 1 33 TYR n 1 34 ARG n 1 35 LYS n 1 36 ALA n 1 37 ALA n 1 38 SER n 1 39 VAL n 1 40 ILE n 1 41 ALA n 1 42 LYS n 1 43 TYR n 1 44 PRO n 1 45 HIS n 1 46 LYS n 1 47 ILE n 1 48 LYS n 1 49 SER n 1 50 GLY n 1 51 ALA n 1 52 GLU n 1 53 ALA n 1 54 LYS n 1 55 LYS n 1 56 LEU n 1 57 PRO n 1 58 GLY n 1 59 VAL n 1 60 GLY n 1 61 THR n 1 62 LYS n 1 63 ILE n 1 64 ALA n 1 65 GLU n 1 66 LYS n 1 67 ILE n 1 68 ASP n 1 69 GLU n 1 70 PHE n 1 71 LEU n 1 72 ALA n 1 73 THR n 1 74 GLY n 1 75 LYS n 1 76 LEU n 1 77 ARG n 1 78 LYS n 1 79 LEU n 1 80 GLU n 1 81 LYS n 1 82 ILE n 1 83 ARG n 1 84 GLN n 1 85 ASP n 1 86 ASP n 1 87 THR n 1 88 SER n 1 89 SER n 1 90 SER n 1 91 ILE n 1 92 ASN n 1 93 PHE n 1 94 LEU n 1 95 THR n 1 96 ARG n 1 97 VAL n 1 98 SER n 1 99 GLY n 1 100 ILE n 1 101 GLY n 1 102 PRO n 1 103 SER n 1 104 ALA n 1 105 ALA n 1 106 ARG n 1 107 LYS n 1 108 PHE n 1 109 VAL n 1 110 ASP n 1 111 GLU n 1 112 GLY n 1 113 ILE n 1 114 LYS n 1 115 THR n 1 116 LEU n 1 117 GLU n 1 118 ASP n 1 119 LEU n 1 120 ARG n 1 121 LYS n 1 122 ASN n 1 123 GLU n 1 124 ASP n 1 125 LYS n 1 126 LEU n 1 127 ASN n 1 128 HIS n 1 129 HIS n 1 130 GLN n 1 131 ARG n 1 132 ILE n 1 133 GLY n 1 134 LEU n 1 135 LYS n 1 136 TYR n 1 137 PHE n 1 138 GLY n 1 139 ASP n 1 140 PHE n 1 141 GLU n 1 142 LYS n 1 143 ARG n 1 144 ILE n 1 145 PRO n 1 146 ARG n 1 147 GLU n 1 148 GLU n 1 149 MET n 1 150 LEU n 1 151 GLN n 1 152 MET n 1 153 GLN n 1 154 ASP n 1 155 ILE n 1 156 VAL n 1 157 LEU n 1 158 ASN n 1 159 GLU n 1 160 VAL n 1 161 LYS n 1 162 LYS n 1 163 VAL n 1 164 ASP n 1 165 SER n 1 166 GLU n 1 167 TYR n 1 168 ILE n 1 169 ALA n 1 170 THR n 1 171 VAL n 1 172 CYS n 1 173 GLY n 1 174 SER n 1 175 PHE n 1 176 ARG n 1 177 ARG n 1 178 GLY n 1 179 ALA n 1 180 GLU n 1 181 SER n 1 182 SER n 1 183 GLY n 1 184 ASP n 1 185 MET n 1 186 ASP n 1 187 VAL n 1 188 LEU n 1 189 LEU n 1 190 THR n 1 191 HIS n 1 192 PRO n 1 193 SER n 1 194 PHE n 1 195 THR n 1 196 SER n 1 197 GLU n 1 198 SER n 1 199 THR n 1 200 LYS n 1 201 GLN n 1 202 PRO n 1 203 LYS n 1 204 LEU n 1 205 LEU n 1 206 HIS n 1 207 GLN n 1 208 VAL n 1 209 VAL n 1 210 GLU n 1 211 GLN n 1 212 LEU n 1 213 GLN n 1 214 LYS n 1 215 VAL n 1 216 HIS n 1 217 PHE n 1 218 ILE n 1 219 THR n 1 220 ASP n 1 221 THR n 1 222 LEU n 1 223 SER n 1 224 LYS n 1 225 GLY n 1 226 GLU n 1 227 THR n 1 228 LYS n 1 229 PHE n 1 230 MET n 1 231 GLY n 1 232 VAL n 1 233 CYS n 1 234 GLN n 1 235 LEU n 1 236 PRO n 1 237 SER n 1 238 LYS n 1 239 ASN n 1 240 ASP n 1 241 GLU n 1 242 LYS n 1 243 GLU n 1 244 TYR n 1 245 PRO n 1 246 HIS n 1 247 ARG n 1 248 ARG n 1 249 ILE n 1 250 ASP n 1 251 ILE n 1 252 ARG n 1 253 LEU n 1 254 ILE n 1 255 PRO n 1 256 LYS n 1 257 ASP n 1 258 GLN n 1 259 TYR n 1 260 TYR n 1 261 CYS n 1 262 GLY n 1 263 VAL n 1 264 LEU n 1 265 TYR n 1 266 PHE n 1 267 THR n 1 268 GLY n 1 269 SER n 1 270 ASP n 1 271 ILE n 1 272 PHE n 1 273 ASN n 1 274 LYS n 1 275 ASN n 1 276 MET n 1 277 ARG n 1 278 ALA n 1 279 HIS n 1 280 ALA n 1 281 LEU n 1 282 GLU n 1 283 LYS n 1 284 GLY n 1 285 PHE n 1 286 THR n 1 287 ILE n 1 288 ASN n 1 289 GLU n 1 290 TYR n 1 291 THR n 1 292 ILE n 1 293 ARG n 1 294 PRO n 1 295 LEU n 1 296 GLY n 1 297 VAL n 1 298 THR n 1 299 GLY n 1 300 VAL n 1 301 ALA n 1 302 GLY n 1 303 GLU n 1 304 PRO n 1 305 LEU n 1 306 PRO n 1 307 VAL n 1 308 ASP n 1 309 SER n 1 310 GLU n 1 311 LYS n 1 312 ASP n 1 313 ILE n 1 314 PHE n 1 315 ASP n 1 316 TYR n 1 317 ILE n 1 318 GLN n 1 319 TRP n 1 320 LYS n 1 321 TYR n 1 322 ARG n 1 323 GLU n 1 324 PRO n 1 325 LYS n 1 326 ASP n 1 327 ARG n 1 328 SER n 1 329 GLU n 2 1 DC n 2 2 DC n 2 3 DG n 2 4 DA n 2 5 DC n 2 6 FMG n 2 7 DT n 2 8 DC n 2 9 DG n 2 10 DC n 2 11 DA n 2 12 DT n 2 13 DC n 2 14 DA n 2 15 DG n 2 16 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DA n 3 6 DT n 3 7 DG n 3 8 DC n 3 9 DG n 3 10 DA n 4 1 DG n 4 2 DT n 4 3 DC n 4 4 DG n 4 5 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene POLB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 'synthetic template DNA' 3 1 sample ? ? 'synthetic construct' ? 32630 'synthetic up primer' 4 1 sample ? ? 'synthetic construct' ? 32630 'synthetic down primer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1FZ non-polymer . "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine" ? 'C10 H18 N3 O13 P3' 481.184 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FMG 'DNA linking' n '2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7-methyl-6-oxo-6,9-dihydro-1H-purin-7-ium' ? 'C11 H16 F N5 O7 P 1' 380.246 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 7 7 PRO PRO A . n A 1 2 GLN 2 8 8 GLN GLN A . n A 1 3 GLU 3 9 9 GLU GLU A . n A 1 4 THR 4 10 10 THR THR A . n A 1 5 LEU 5 11 11 LEU LEU A . n A 1 6 ASN 6 12 12 ASN ASN A . n A 1 7 GLY 7 13 13 GLY GLY A . n A 1 8 GLY 8 14 14 GLY GLY A . n A 1 9 ILE 9 15 15 ILE ILE A . n A 1 10 THR 10 16 16 THR THR A . n A 1 11 ASP 11 17 17 ASP ASP A . n A 1 12 MET 12 18 18 MET MET A . n A 1 13 LEU 13 19 19 LEU LEU A . n A 1 14 THR 14 20 20 THR THR A . n A 1 15 GLU 15 21 21 GLU GLU A . n A 1 16 LEU 16 22 22 LEU LEU A . n A 1 17 ALA 17 23 23 ALA ALA A . n A 1 18 ASN 18 24 24 ASN ASN A . n A 1 19 PHE 19 25 25 PHE PHE A . n A 1 20 GLU 20 26 26 GLU GLU A . n A 1 21 LYS 21 27 27 LYS LYS A . n A 1 22 ASN 22 28 28 ASN ASN A . n A 1 23 VAL 23 29 29 VAL VAL A . n A 1 24 SER 24 30 30 SER SER A . n A 1 25 GLN 25 31 31 GLN GLN A . n A 1 26 ALA 26 32 32 ALA ALA A . n A 1 27 ILE 27 33 33 ILE ILE A . n A 1 28 HIS 28 34 34 HIS HIS A . n A 1 29 LYS 29 35 35 LYS LYS A . n A 1 30 TYR 30 36 36 TYR TYR A . n A 1 31 ASN 31 37 37 ASN ASN A . n A 1 32 ALA 32 38 38 ALA ALA A . n A 1 33 TYR 33 39 39 TYR TYR A . n A 1 34 ARG 34 40 40 ARG ARG A . n A 1 35 LYS 35 41 41 LYS LYS A . n A 1 36 ALA 36 42 42 ALA ALA A . n A 1 37 ALA 37 43 43 ALA ALA A . n A 1 38 SER 38 44 44 SER SER A . n A 1 39 VAL 39 45 45 VAL VAL A . n A 1 40 ILE 40 46 46 ILE ILE A . n A 1 41 ALA 41 47 47 ALA ALA A . n A 1 42 LYS 42 48 48 LYS LYS A . n A 1 43 TYR 43 49 49 TYR TYR A . n A 1 44 PRO 44 50 50 PRO PRO A . n A 1 45 HIS 45 51 51 HIS HIS A . n A 1 46 LYS 46 52 52 LYS LYS A . n A 1 47 ILE 47 53 53 ILE ILE A . n A 1 48 LYS 48 54 54 LYS LYS A . n A 1 49 SER 49 55 55 SER SER A . n A 1 50 GLY 50 56 56 GLY GLY A . n A 1 51 ALA 51 57 57 ALA ALA A . n A 1 52 GLU 52 58 58 GLU GLU A . n A 1 53 ALA 53 59 59 ALA ALA A . n A 1 54 LYS 54 60 60 LYS LYS A . n A 1 55 LYS 55 61 61 LYS LYS A . n A 1 56 LEU 56 62 62 LEU LEU A . n A 1 57 PRO 57 63 63 PRO PRO A . n A 1 58 GLY 58 64 64 GLY GLY A . n A 1 59 VAL 59 65 65 VAL VAL A . n A 1 60 GLY 60 66 66 GLY GLY A . n A 1 61 THR 61 67 67 THR THR A . n A 1 62 LYS 62 68 68 LYS LYS A . n A 1 63 ILE 63 69 69 ILE ILE A . n A 1 64 ALA 64 70 70 ALA ALA A . n A 1 65 GLU 65 71 71 GLU GLU A . n A 1 66 LYS 66 72 72 LYS LYS A . n A 1 67 ILE 67 73 73 ILE ILE A . n A 1 68 ASP 68 74 74 ASP ASP A . n A 1 69 GLU 69 75 75 GLU GLU A . n A 1 70 PHE 70 76 76 PHE PHE A . n A 1 71 LEU 71 77 77 LEU LEU A . n A 1 72 ALA 72 78 78 ALA ALA A . n A 1 73 THR 73 79 79 THR THR A . n A 1 74 GLY 74 80 80 GLY GLY A . n A 1 75 LYS 75 81 81 LYS LYS A . n A 1 76 LEU 76 82 82 LEU LEU A . n A 1 77 ARG 77 83 83 ARG ARG A . n A 1 78 LYS 78 84 84 LYS LYS A . n A 1 79 LEU 79 85 85 LEU LEU A . n A 1 80 GLU 80 86 86 GLU GLU A . n A 1 81 LYS 81 87 87 LYS LYS A . n A 1 82 ILE 82 88 88 ILE ILE A . n A 1 83 ARG 83 89 89 ARG ARG A . n A 1 84 GLN 84 90 90 GLN GLN A . n A 1 85 ASP 85 91 91 ASP ASP A . n A 1 86 ASP 86 92 92 ASP ASP A . n A 1 87 THR 87 93 93 THR THR A . n A 1 88 SER 88 94 94 SER SER A . n A 1 89 SER 89 95 95 SER SER A . n A 1 90 SER 90 96 96 SER SER A . n A 1 91 ILE 91 97 97 ILE ILE A . n A 1 92 ASN 92 98 98 ASN ASN A . n A 1 93 PHE 93 99 99 PHE PHE A . n A 1 94 LEU 94 100 100 LEU LEU A . n A 1 95 THR 95 101 101 THR THR A . n A 1 96 ARG 96 102 102 ARG ARG A . n A 1 97 VAL 97 103 103 VAL VAL A . n A 1 98 SER 98 104 104 SER SER A . n A 1 99 GLY 99 105 105 GLY GLY A . n A 1 100 ILE 100 106 106 ILE ILE A . n A 1 101 GLY 101 107 107 GLY GLY A . n A 1 102 PRO 102 108 108 PRO PRO A . n A 1 103 SER 103 109 109 SER SER A . n A 1 104 ALA 104 110 110 ALA ALA A . n A 1 105 ALA 105 111 111 ALA ALA A . n A 1 106 ARG 106 112 112 ARG ARG A . n A 1 107 LYS 107 113 113 LYS LYS A . n A 1 108 PHE 108 114 114 PHE PHE A . n A 1 109 VAL 109 115 115 VAL VAL A . n A 1 110 ASP 110 116 116 ASP ASP A . n A 1 111 GLU 111 117 117 GLU GLU A . n A 1 112 GLY 112 118 118 GLY GLY A . n A 1 113 ILE 113 119 119 ILE ILE A . n A 1 114 LYS 114 120 120 LYS LYS A . n A 1 115 THR 115 121 121 THR THR A . n A 1 116 LEU 116 122 122 LEU LEU A . n A 1 117 GLU 117 123 123 GLU GLU A . n A 1 118 ASP 118 124 124 ASP ASP A . n A 1 119 LEU 119 125 125 LEU LEU A . n A 1 120 ARG 120 126 126 ARG ARG A . n A 1 121 LYS 121 127 127 LYS LYS A . n A 1 122 ASN 122 128 128 ASN ASN A . n A 1 123 GLU 123 129 129 GLU GLU A . n A 1 124 ASP 124 130 130 ASP ASP A . n A 1 125 LYS 125 131 131 LYS LYS A . n A 1 126 LEU 126 132 132 LEU LEU A . n A 1 127 ASN 127 133 133 ASN ASN A . n A 1 128 HIS 128 134 134 HIS HIS A . n A 1 129 HIS 129 135 135 HIS HIS A . n A 1 130 GLN 130 136 136 GLN GLN A . n A 1 131 ARG 131 137 137 ARG ARG A . n A 1 132 ILE 132 138 138 ILE ILE A . n A 1 133 GLY 133 139 139 GLY GLY A . n A 1 134 LEU 134 140 140 LEU LEU A . n A 1 135 LYS 135 141 141 LYS LYS A . n A 1 136 TYR 136 142 142 TYR TYR A . n A 1 137 PHE 137 143 143 PHE PHE A . n A 1 138 GLY 138 144 144 GLY GLY A . n A 1 139 ASP 139 145 145 ASP ASP A . n A 1 140 PHE 140 146 146 PHE PHE A . n A 1 141 GLU 141 147 147 GLU GLU A . n A 1 142 LYS 142 148 148 LYS LYS A . n A 1 143 ARG 143 149 149 ARG ARG A . n A 1 144 ILE 144 150 150 ILE ILE A . n A 1 145 PRO 145 151 151 PRO PRO A . n A 1 146 ARG 146 152 152 ARG ARG A . n A 1 147 GLU 147 153 153 GLU GLU A . n A 1 148 GLU 148 154 154 GLU GLU A . n A 1 149 MET 149 155 155 MET MET A . n A 1 150 LEU 150 156 156 LEU LEU A . n A 1 151 GLN 151 157 157 GLN GLN A . n A 1 152 MET 152 158 158 MET MET A . n A 1 153 GLN 153 159 159 GLN GLN A . n A 1 154 ASP 154 160 160 ASP ASP A . n A 1 155 ILE 155 161 161 ILE ILE A . n A 1 156 VAL 156 162 162 VAL VAL A . n A 1 157 LEU 157 163 163 LEU LEU A . n A 1 158 ASN 158 164 164 ASN ASN A . n A 1 159 GLU 159 165 165 GLU GLU A . n A 1 160 VAL 160 166 166 VAL VAL A . n A 1 161 LYS 161 167 167 LYS LYS A . n A 1 162 LYS 162 168 168 LYS LYS A . n A 1 163 VAL 163 169 169 VAL VAL A . n A 1 164 ASP 164 170 170 ASP ASP A . n A 1 165 SER 165 171 171 SER SER A . n A 1 166 GLU 166 172 172 GLU GLU A . n A 1 167 TYR 167 173 173 TYR TYR A . n A 1 168 ILE 168 174 174 ILE ILE A . n A 1 169 ALA 169 175 175 ALA ALA A . n A 1 170 THR 170 176 176 THR THR A . n A 1 171 VAL 171 177 177 VAL VAL A . n A 1 172 CYS 172 178 178 CYS CYS A . n A 1 173 GLY 173 179 179 GLY GLY A . n A 1 174 SER 174 180 180 SER SER A . n A 1 175 PHE 175 181 181 PHE PHE A . n A 1 176 ARG 176 182 182 ARG ARG A . n A 1 177 ARG 177 183 183 ARG ARG A . n A 1 178 GLY 178 184 184 GLY GLY A . n A 1 179 ALA 179 185 185 ALA ALA A . n A 1 180 GLU 180 186 186 GLU GLU A . n A 1 181 SER 181 187 187 SER SER A . n A 1 182 SER 182 188 188 SER SER A . n A 1 183 GLY 183 189 189 GLY GLY A . n A 1 184 ASP 184 190 190 ASP ASP A . n A 1 185 MET 185 191 191 MET MET A . n A 1 186 ASP 186 192 192 ASP ASP A . n A 1 187 VAL 187 193 193 VAL VAL A . n A 1 188 LEU 188 194 194 LEU LEU A . n A 1 189 LEU 189 195 195 LEU LEU A . n A 1 190 THR 190 196 196 THR THR A . n A 1 191 HIS 191 197 197 HIS HIS A . n A 1 192 PRO 192 198 198 PRO PRO A . n A 1 193 SER 193 199 199 SER SER A . n A 1 194 PHE 194 200 200 PHE PHE A . n A 1 195 THR 195 201 201 THR THR A . n A 1 196 SER 196 202 202 SER SER A . n A 1 197 GLU 197 203 203 GLU GLU A . n A 1 198 SER 198 204 204 SER SER A . n A 1 199 THR 199 205 ? ? ? A . n A 1 200 LYS 200 206 ? ? ? A . n A 1 201 GLN 201 207 207 GLN GLN A . n A 1 202 PRO 202 208 208 PRO PRO A . n A 1 203 LYS 203 209 209 LYS LYS A . n A 1 204 LEU 204 210 210 LEU LEU A . n A 1 205 LEU 205 211 211 LEU LEU A . n A 1 206 HIS 206 212 212 HIS HIS A . n A 1 207 GLN 207 213 213 GLN GLN A . n A 1 208 VAL 208 214 214 VAL VAL A . n A 1 209 VAL 209 215 215 VAL VAL A . n A 1 210 GLU 210 216 216 GLU GLU A . n A 1 211 GLN 211 217 217 GLN GLN A . n A 1 212 LEU 212 218 218 LEU LEU A . n A 1 213 GLN 213 219 219 GLN GLN A . n A 1 214 LYS 214 220 220 LYS LYS A . n A 1 215 VAL 215 221 221 VAL VAL A . n A 1 216 HIS 216 222 222 HIS HIS A . n A 1 217 PHE 217 223 223 PHE PHE A . n A 1 218 ILE 218 224 224 ILE ILE A . n A 1 219 THR 219 225 225 THR THR A . n A 1 220 ASP 220 226 226 ASP ASP A . n A 1 221 THR 221 227 227 THR THR A . n A 1 222 LEU 222 228 228 LEU LEU A . n A 1 223 SER 223 229 229 SER SER A . n A 1 224 LYS 224 230 230 LYS LYS A . n A 1 225 GLY 225 231 231 GLY GLY A . n A 1 226 GLU 226 232 232 GLU GLU A . n A 1 227 THR 227 233 233 THR THR A . n A 1 228 LYS 228 234 234 LYS LYS A . n A 1 229 PHE 229 235 235 PHE PHE A . n A 1 230 MET 230 236 236 MET MET A . n A 1 231 GLY 231 237 237 GLY GLY A . n A 1 232 VAL 232 238 238 VAL VAL A . n A 1 233 CYS 233 239 239 CYS CYS A . n A 1 234 GLN 234 240 240 GLN GLN A . n A 1 235 LEU 235 241 241 LEU LEU A . n A 1 236 PRO 236 242 242 PRO PRO A . n A 1 237 SER 237 243 243 SER SER A . n A 1 238 LYS 238 244 244 LYS LYS A . n A 1 239 ASN 239 245 245 ASN ASN A . n A 1 240 ASP 240 246 246 ASP ASP A . n A 1 241 GLU 241 247 247 GLU GLU A . n A 1 242 LYS 242 248 248 LYS LYS A . n A 1 243 GLU 243 249 249 GLU GLU A . n A 1 244 TYR 244 250 250 TYR TYR A . n A 1 245 PRO 245 251 251 PRO PRO A . n A 1 246 HIS 246 252 252 HIS HIS A . n A 1 247 ARG 247 253 253 ARG ARG A . n A 1 248 ARG 248 254 254 ARG ARG A . n A 1 249 ILE 249 255 255 ILE ILE A . n A 1 250 ASP 250 256 256 ASP ASP A . n A 1 251 ILE 251 257 257 ILE ILE A . n A 1 252 ARG 252 258 258 ARG ARG A . n A 1 253 LEU 253 259 259 LEU LEU A . n A 1 254 ILE 254 260 260 ILE ILE A . n A 1 255 PRO 255 261 261 PRO PRO A . n A 1 256 LYS 256 262 262 LYS LYS A . n A 1 257 ASP 257 263 263 ASP ASP A . n A 1 258 GLN 258 264 264 GLN GLN A . n A 1 259 TYR 259 265 265 TYR TYR A . n A 1 260 TYR 260 266 266 TYR TYR A . n A 1 261 CYS 261 267 267 CYS CYS A . n A 1 262 GLY 262 268 268 GLY GLY A . n A 1 263 VAL 263 269 269 VAL VAL A . n A 1 264 LEU 264 270 270 LEU LEU A . n A 1 265 TYR 265 271 271 TYR TYR A . n A 1 266 PHE 266 272 272 PHE PHE A . n A 1 267 THR 267 273 273 THR THR A . n A 1 268 GLY 268 274 274 GLY GLY A . n A 1 269 SER 269 275 275 SER SER A . n A 1 270 ASP 270 276 276 ASP ASP A . n A 1 271 ILE 271 277 277 ILE ILE A . n A 1 272 PHE 272 278 278 PHE PHE A . n A 1 273 ASN 273 279 279 ASN ASN A . n A 1 274 LYS 274 280 280 LYS LYS A . n A 1 275 ASN 275 281 281 ASN ASN A . n A 1 276 MET 276 282 282 MET MET A . n A 1 277 ARG 277 283 283 ARG ARG A . n A 1 278 ALA 278 284 284 ALA ALA A . n A 1 279 HIS 279 285 285 HIS HIS A . n A 1 280 ALA 280 286 286 ALA ALA A . n A 1 281 LEU 281 287 287 LEU LEU A . n A 1 282 GLU 282 288 288 GLU GLU A . n A 1 283 LYS 283 289 289 LYS LYS A . n A 1 284 GLY 284 290 290 GLY GLY A . n A 1 285 PHE 285 291 291 PHE PHE A . n A 1 286 THR 286 292 292 THR THR A . n A 1 287 ILE 287 293 293 ILE ILE A . n A 1 288 ASN 288 294 294 ASN ASN A . n A 1 289 GLU 289 295 295 GLU GLU A . n A 1 290 TYR 290 296 296 TYR TYR A . n A 1 291 THR 291 297 297 THR THR A . n A 1 292 ILE 292 298 298 ILE ILE A . n A 1 293 ARG 293 299 299 ARG ARG A . n A 1 294 PRO 294 300 300 PRO PRO A . n A 1 295 LEU 295 301 301 LEU LEU A . n A 1 296 GLY 296 302 302 GLY GLY A . n A 1 297 VAL 297 303 303 VAL VAL A . n A 1 298 THR 298 304 304 THR THR A . n A 1 299 GLY 299 305 305 GLY GLY A . n A 1 300 VAL 300 306 306 VAL VAL A . n A 1 301 ALA 301 307 307 ALA ALA A . n A 1 302 GLY 302 308 308 GLY GLY A . n A 1 303 GLU 303 309 309 GLU GLU A . n A 1 304 PRO 304 310 310 PRO PRO A . n A 1 305 LEU 305 311 311 LEU LEU A . n A 1 306 PRO 306 312 312 PRO PRO A . n A 1 307 VAL 307 313 313 VAL VAL A . n A 1 308 ASP 308 314 314 ASP ASP A . n A 1 309 SER 309 315 315 SER SER A . n A 1 310 GLU 310 316 316 GLU GLU A . n A 1 311 LYS 311 317 317 LYS LYS A . n A 1 312 ASP 312 318 318 ASP ASP A . n A 1 313 ILE 313 319 319 ILE ILE A . n A 1 314 PHE 314 320 320 PHE PHE A . n A 1 315 ASP 315 321 321 ASP ASP A . n A 1 316 TYR 316 322 322 TYR TYR A . n A 1 317 ILE 317 323 323 ILE ILE A . n A 1 318 GLN 318 324 324 GLN GLN A . n A 1 319 TRP 319 325 325 TRP TRP A . n A 1 320 LYS 320 326 326 LYS LYS A . n A 1 321 TYR 321 327 327 TYR TYR A . n A 1 322 ARG 322 328 328 ARG ARG A . n A 1 323 GLU 323 329 329 GLU GLU A . n A 1 324 PRO 324 330 330 PRO PRO A . n A 1 325 LYS 325 331 331 LYS LYS A . n A 1 326 ASP 326 332 332 ASP ASP A . n A 1 327 ARG 327 333 333 ARG ARG A . n A 1 328 SER 328 334 334 SER SER A . n A 1 329 GLU 329 335 335 GLU GLU A . n B 2 1 DC 1 1 1 DC DC T . n B 2 2 DC 2 2 2 DC DC T . n B 2 3 DG 3 3 3 DG DG T . n B 2 4 DA 4 4 4 DA DA T . n B 2 5 DC 5 5 5 DC DC T . n B 2 6 FMG 6 6 6 FMG FMG T . n B 2 7 DT 7 7 7 DT DT T . n B 2 8 DC 8 8 8 DC DC T . n B 2 9 DG 9 9 9 DG DG T . n B 2 10 DC 10 10 10 DC DC T . n B 2 11 DA 11 11 11 DA DA T . n B 2 12 DT 12 12 12 DT DT T . n B 2 13 DC 13 13 13 DC DC T . n B 2 14 DA 14 14 14 DA DA T . n B 2 15 DG 15 15 15 DG DG T . n B 2 16 DC 16 16 16 DC DC T . n C 3 1 DG 1 1 1 DG DG P . n C 3 2 DC 2 2 2 DC DC P . n C 3 3 DT 3 3 3 DT DT P . n C 3 4 DG 4 4 4 DG DG P . n C 3 5 DA 5 5 5 DA DA P . n C 3 6 DT 6 6 6 DT DT P . n C 3 7 DG 7 7 7 DG DG P . n C 3 8 DC 8 8 8 DC DC P . n C 3 9 DG 9 9 9 DG DG P . n C 3 10 DA 10 10 10 DA DA P . n D 4 1 DG 1 1 1 DG DG D . n D 4 2 DT 2 2 2 DT DT D . n D 4 3 DC 3 3 3 DC DC D . n D 4 4 DG 4 4 4 DG DG D . n D 4 5 DG 5 5 5 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG 1 401 400 MG MG A . F 6 NA 1 402 402 NA NA A . G 6 NA 1 403 403 NA NA A . H 7 1FZ 1 404 404 1FZ 1FZ A . I 8 HOH 1 501 1 HOH HOH A . I 8 HOH 2 502 2 HOH HOH A . I 8 HOH 3 503 5 HOH HOH A . I 8 HOH 4 504 6 HOH HOH A . I 8 HOH 5 505 7 HOH HOH A . I 8 HOH 6 506 8 HOH HOH A . I 8 HOH 7 507 10 HOH HOH A . I 8 HOH 8 508 11 HOH HOH A . I 8 HOH 9 509 12 HOH HOH A . I 8 HOH 10 510 13 HOH HOH A . I 8 HOH 11 511 14 HOH HOH A . I 8 HOH 12 512 16 HOH HOH A . I 8 HOH 13 513 17 HOH HOH A . I 8 HOH 14 514 18 HOH HOH A . I 8 HOH 15 515 20 HOH HOH A . I 8 HOH 16 516 21 HOH HOH A . I 8 HOH 17 517 22 HOH HOH A . I 8 HOH 18 518 23 HOH HOH A . I 8 HOH 19 519 24 HOH HOH A . I 8 HOH 20 520 25 HOH HOH A . I 8 HOH 21 521 26 HOH HOH A . I 8 HOH 22 522 27 HOH HOH A . I 8 HOH 23 523 28 HOH HOH A . I 8 HOH 24 524 30 HOH HOH A . I 8 HOH 25 525 34 HOH HOH A . I 8 HOH 26 526 35 HOH HOH A . I 8 HOH 27 527 37 HOH HOH A . I 8 HOH 28 528 38 HOH HOH A . I 8 HOH 29 529 39 HOH HOH A . I 8 HOH 30 530 40 HOH HOH A . I 8 HOH 31 531 41 HOH HOH A . I 8 HOH 32 532 43 HOH HOH A . I 8 HOH 33 533 45 HOH HOH A . I 8 HOH 34 534 48 HOH HOH A . I 8 HOH 35 535 49 HOH HOH A . I 8 HOH 36 536 50 HOH HOH A . I 8 HOH 37 537 51 HOH HOH A . I 8 HOH 38 538 52 HOH HOH A . I 8 HOH 39 539 53 HOH HOH A . I 8 HOH 40 540 54 HOH HOH A . I 8 HOH 41 541 55 HOH HOH A . I 8 HOH 42 542 56 HOH HOH A . I 8 HOH 43 543 57 HOH HOH A . I 8 HOH 44 544 58 HOH HOH A . I 8 HOH 45 545 59 HOH HOH A . I 8 HOH 46 546 61 HOH HOH A . I 8 HOH 47 547 63 HOH HOH A . I 8 HOH 48 548 65 HOH HOH A . I 8 HOH 49 549 67 HOH HOH A . I 8 HOH 50 550 69 HOH HOH A . I 8 HOH 51 551 70 HOH HOH A . I 8 HOH 52 552 72 HOH HOH A . I 8 HOH 53 553 73 HOH HOH A . I 8 HOH 54 554 75 HOH HOH A . I 8 HOH 55 555 76 HOH HOH A . I 8 HOH 56 556 77 HOH HOH A . I 8 HOH 57 557 78 HOH HOH A . I 8 HOH 58 558 79 HOH HOH A . I 8 HOH 59 559 80 HOH HOH A . I 8 HOH 60 560 81 HOH HOH A . I 8 HOH 61 561 82 HOH HOH A . I 8 HOH 62 562 83 HOH HOH A . I 8 HOH 63 563 84 HOH HOH A . J 8 HOH 1 101 9 HOH HOH T . J 8 HOH 2 102 15 HOH HOH T . J 8 HOH 3 103 44 HOH HOH T . K 8 HOH 1 101 4 HOH HOH P . K 8 HOH 2 102 19 HOH HOH P . K 8 HOH 3 103 29 HOH HOH P . L 8 HOH 1 101 64 HOH HOH D . L 8 HOH 2 102 66 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 8 ? CG ? A GLN 2 CG 2 1 Y 1 A GLN 8 ? CD ? A GLN 2 CD 3 1 Y 1 A GLN 8 ? OE1 ? A GLN 2 OE1 4 1 Y 1 A GLN 8 ? NE2 ? A GLN 2 NE2 5 1 Y 1 A GLU 9 ? CG ? A GLU 3 CG 6 1 Y 1 A GLU 9 ? CD ? A GLU 3 CD 7 1 Y 1 A GLU 9 ? OE1 ? A GLU 3 OE1 8 1 Y 1 A GLU 9 ? OE2 ? A GLU 3 OE2 9 1 Y 1 A GLU 203 ? CG ? A GLU 197 CG 10 1 Y 1 A GLU 203 ? CD ? A GLU 197 CD 11 1 Y 1 A GLU 203 ? OE1 ? A GLU 197 OE1 12 1 Y 1 A GLU 203 ? OE2 ? A GLU 197 OE2 13 1 Y 1 A GLN 207 ? CG ? A GLN 201 CG 14 1 Y 1 A GLN 207 ? CD ? A GLN 201 CD 15 1 Y 1 A GLN 207 ? OE1 ? A GLN 201 OE1 16 1 Y 1 A GLN 207 ? NE2 ? A GLN 201 NE2 17 1 Y 1 A PRO 208 ? CG ? A PRO 202 CG 18 1 Y 1 A PRO 208 ? CD ? A PRO 202 CD 19 1 Y 1 A LYS 209 ? CG ? A LYS 203 CG 20 1 Y 1 A LYS 209 ? CD ? A LYS 203 CD 21 1 Y 1 A LYS 209 ? CE ? A LYS 203 CE 22 1 Y 1 A LYS 209 ? NZ ? A LYS 203 NZ 23 1 Y 1 A LYS 244 ? CG ? A LYS 238 CG 24 1 Y 1 A LYS 244 ? CD ? A LYS 238 CD 25 1 Y 1 A LYS 244 ? CE ? A LYS 238 CE 26 1 Y 1 A LYS 244 ? NZ ? A LYS 238 NZ 27 1 Y 1 A ASN 245 ? CG ? A ASN 239 CG 28 1 Y 1 A ASN 245 ? OD1 ? A ASN 239 OD1 29 1 Y 1 A ASN 245 ? ND2 ? A ASN 239 ND2 30 1 Y 1 A ASP 246 ? CG ? A ASP 240 CG 31 1 Y 1 A ASP 246 ? OD1 ? A ASP 240 OD1 32 1 Y 1 A ASP 246 ? OD2 ? A ASP 240 OD2 33 1 Y 1 A GLU 247 ? CG ? A GLU 241 CG 34 1 Y 1 A GLU 247 ? CD ? A GLU 241 CD 35 1 Y 1 A GLU 247 ? OE1 ? A GLU 241 OE1 36 1 Y 1 A GLU 247 ? OE2 ? A GLU 241 OE2 37 1 Y 1 A LYS 248 ? CG ? A LYS 242 CG 38 1 Y 1 A LYS 248 ? CD ? A LYS 242 CD 39 1 Y 1 A LYS 248 ? CE ? A LYS 242 CE 40 1 Y 1 A LYS 248 ? NZ ? A LYS 242 NZ 41 1 Y 1 A LYS 326 ? CG ? A LYS 320 CG 42 1 Y 1 A LYS 326 ? CD ? A LYS 320 CD 43 1 Y 1 A LYS 326 ? CE ? A LYS 320 CE 44 1 Y 1 A LYS 326 ? NZ ? A LYS 320 NZ # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.8.1_1168 ? ? ? ? refinement ? ? ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 StructureStudio . ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _cell.length_a 54.425 _cell.length_b 78.920 _cell.length_c 54.819 _cell.angle_alpha 90.000 _cell.angle_beta 105.970 _cell.angle_gamma 90.000 _cell.entry_id 4O5E _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 4O5E _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 4 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 4O5E _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '14%-23% PEG3400, and 350 mM sodium acetate in 50 mM imidazole, pH 7.5, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.details ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2013-10-19 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97648 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.3' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97648 _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.3 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.532 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI ? _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs ? _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4O5E _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 14851 _reflns.d_resolution_low 20 _reflns.pdbx_redundancy ? _reflns.number_obs 14806 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 5.0500 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_R_Free_selection_details ? _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4O5E _refine.aniso_B[2][3] ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.4000 _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] ? _refine.pdbx_stereochemistry_target_values ML _refine.aniso_B[3][3] ? _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] ? _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.2088 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.correlation_coeff_Fo_to_Fc ? _refine.ls_number_reflns_R_free 698 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 92.6300 _refine.ls_R_factor_R_work 0.2054 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.5320 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min 11.790 _refine.occupancy_min 1.000 _refine.B_iso_mean 34.6507 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] ? _refine.B_iso_max 91.670 _refine.ls_d_res_low 19.7300 _refine.pdbx_overall_phase_error 29.2500 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.aniso_B[1][2] ? _refine.ls_R_factor_R_free 0.2728 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 13821 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2579 _refine_hist.pdbx_number_atoms_nucleic_acid 634 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 3316 _refine_hist.d_res_high 2.5320 _refine_hist.d_res_low 19.7300 # _struct.entry_id 4O5E _struct.title 'Structure of human DNA polymerase complexed with N7MG in the template base paired with incoming non-hydrolyzable TTP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O5E _struct_keywords.pdbx_keywords 'Transferase, Lyase/DNA' _struct_keywords.text 'DNA binding, polymerase fold, nucleotidyl transfer, DNA, nucleus, Transferase, Lyase-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 7 ? I N N 8 ? J N N 8 ? K N N 8 ? L N N 8 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPOLB_HUMAN P06746 1 ;PQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLE KIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEV KKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKND EKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWK YREPKDRSE ; 7 ? 2 PDB 4O5E 4O5E 2 ? ? ? 3 PDB 4O5E 4O5E 3 ? ? ? 4 PDB 4O5E 4O5E 4 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4O5E A 1 ? 329 ? P06746 7 ? 335 ? 7 335 2 2 4O5E T 1 ? 16 ? 4O5E 1 ? 16 ? 1 16 3 3 4O5E P 1 ? 10 ? 4O5E 1 ? 10 ? 1 10 4 4 4O5E D 1 ? 5 ? 4O5E 1 ? 5 ? 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4260 ? 1 MORE -55 ? 1 'SSA (A^2)' 21030 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 2 ? VAL A 23 ? GLN A 8 VAL A 29 1 ? 22 HELX_P HELX_P2 2 ALA A 26 ? LYS A 42 ? ALA A 32 LYS A 48 1 ? 17 HELX_P HELX_P3 3 SER A 49 ? LYS A 55 ? SER A 55 LYS A 61 1 ? 7 HELX_P HELX_P4 4 GLY A 60 ? GLY A 74 ? GLY A 66 GLY A 80 1 ? 15 HELX_P HELX_P5 5 LEU A 76 ? GLN A 84 ? LEU A 82 GLN A 90 1 ? 9 HELX_P HELX_P6 6 ASP A 85 ? THR A 95 ? ASP A 91 THR A 101 1 ? 11 HELX_P HELX_P7 7 GLY A 101 ? GLU A 111 ? GLY A 107 GLU A 117 1 ? 11 HELX_P HELX_P8 8 THR A 115 ? LYS A 121 ? THR A 121 LYS A 127 1 ? 7 HELX_P HELX_P9 9 ASN A 122 ? LEU A 126 ? ASN A 128 LEU A 132 5 ? 5 HELX_P HELX_P10 10 ASN A 127 ? TYR A 136 ? ASN A 133 TYR A 142 1 ? 10 HELX_P HELX_P11 11 TYR A 136 ? GLU A 141 ? TYR A 142 GLU A 147 1 ? 6 HELX_P HELX_P12 12 ARG A 146 ? ASP A 164 ? ARG A 152 ASP A 170 1 ? 19 HELX_P HELX_P13 13 CYS A 172 ? ARG A 177 ? CYS A 178 ARG A 183 1 ? 6 HELX_P HELX_P14 14 LYS A 203 ? VAL A 215 ? LYS A 209 VAL A 221 1 ? 13 HELX_P HELX_P15 15 PRO A 255 ? ASP A 257 ? PRO A 261 ASP A 263 5 ? 3 HELX_P HELX_P16 16 GLN A 258 ? GLY A 268 ? GLN A 264 GLY A 274 1 ? 11 HELX_P HELX_P17 17 SER A 269 ? GLU A 282 ? SER A 275 GLU A 288 1 ? 14 HELX_P HELX_P18 18 SER A 309 ? ILE A 317 ? SER A 315 ILE A 323 1 ? 9 HELX_P HELX_P19 19 GLU A 323 ? ARG A 327 ? GLU A 329 ARG A 333 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DC 5 "O3'" ? ? ? 1_555 B FMG 6 P ? ? T DC 5 T FMG 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B FMG 6 "O3'" ? ? ? 1_555 B DT 7 P ? ? T FMG 6 T DT 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A LYS 54 O ? ? ? 1_555 F NA . NA ? ? A LYS 60 A NA 402 1_555 ? ? ? ? ? ? ? 2.790 ? ? metalc2 metalc ? ? A VAL 59 O ? ? ? 1_555 F NA . NA ? ? A VAL 65 A NA 402 1_555 ? ? ? ? ? ? ? 2.507 ? ? metalc3 metalc ? ? A THR 95 O ? ? ? 1_555 G NA . NA ? ? A THR 101 A NA 403 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc4 metalc ? ? A VAL 97 O ? ? ? 1_555 G NA . NA ? ? A VAL 103 A NA 403 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc5 metalc ? ? A ILE 100 O ? ? ? 1_555 G NA . NA ? ? A ILE 106 A NA 403 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc6 metalc ? ? A ASP 184 OD1 ? ? ? 1_555 E MG . MG ? ? A ASP 190 A MG 401 1_555 ? ? ? ? ? ? ? 2.252 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H 1FZ . O2B ? ? A MG 401 A 1FZ 404 1_555 ? ? ? ? ? ? ? 2.467 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H 1FZ . O1G ? ? A MG 401 A 1FZ 404 1_555 ? ? ? ? ? ? ? 2.532 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H 1FZ . O1A ? ? A MG 401 A 1FZ 404 1_555 ? ? ? ? ? ? ? 2.828 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 562 1_555 ? ? ? ? ? ? ? 2.303 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 I HOH . O ? ? A MG 401 A HOH 563 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc12 metalc ? ? F NA . NA ? ? ? 1_555 D DC 3 OP1 ? ? A NA 402 D DC 3 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc13 metalc ? ? F NA . NA ? ? ? 1_555 D DC 3 OP2 ? ? A NA 402 D DC 3 1_555 ? ? ? ? ? ? ? 3.069 ? ? metalc14 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 403 A HOH 506 1_555 ? ? ? ? ? ? ? 3.067 ? ? metalc15 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 403 A HOH 559 1_555 ? ? ? ? ? ? ? 2.871 ? ? metalc16 metalc ? ? G NA . NA ? ? ? 1_555 C DG 9 OP1 ? ? A NA 403 P DG 9 1_555 ? ? ? ? ? ? ? 2.292 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 D DG 5 N1 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 D DG 5 O6 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 D DG 5 N2 ? ? T DC 1 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 D DG 4 N1 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 D DG 4 O6 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 D DG 4 N2 ? ? T DC 2 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 D DC 3 N3 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 D DC 3 O2 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DC 3 N4 ? ? T DG 3 D DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 D DT 2 N3 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 D DT 2 O4 ? ? T DA 4 D DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 D DG 1 N1 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 D DG 1 O6 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 D DG 1 N2 ? ? T DC 5 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 10 N1 ? ? T DT 7 P DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 10 N6 ? ? T DT 7 P DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 9 N1 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 9 O6 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 9 N2 ? ? T DC 8 P DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 8 N3 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 8 O2 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 8 N4 ? ? T DG 9 P DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DT 6 O4 ? ? T DC 10 P DT 6 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 7 N1 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 7 O6 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 7 N2 ? ? T DC 10 P DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 6 N3 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 6 O4 ? ? T DA 11 P DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 5 N1 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 5 N6 ? ? T DT 12 P DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 4 N1 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 4 O6 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 4 N2 ? ? T DC 13 P DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 3 N3 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 14 N6 ? ? ? 1_555 C DT 3 O4 ? ? T DA 14 P DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DG 15 N1 ? ? ? 1_555 C DC 2 N3 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DG 15 N2 ? ? ? 1_555 C DC 2 O2 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B DG 15 O6 ? ? ? 1_555 C DC 2 N4 ? ? T DG 15 P DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B DC 16 N3 ? ? ? 1_555 C DG 1 N1 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B DC 16 N4 ? ? ? 1_555 C DG 1 O6 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 1 N2 ? ? T DC 16 P DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 54 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 O ? A VAL 59 ? A VAL 65 ? 1_555 78.4 ? 2 O ? A LYS 54 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 137.9 ? 3 O ? A VAL 59 ? A VAL 65 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP1 ? D DC 3 ? D DC 3 ? 1_555 91.2 ? 4 O ? A LYS 54 ? A LYS 60 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP2 ? D DC 3 ? D DC 3 ? 1_555 162.9 ? 5 O ? A VAL 59 ? A VAL 65 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP2 ? D DC 3 ? D DC 3 ? 1_555 88.0 ? 6 OP1 ? D DC 3 ? D DC 3 ? 1_555 NA ? F NA . ? A NA 402 ? 1_555 OP2 ? D DC 3 ? D DC 3 ? 1_555 51.6 ? 7 O ? A THR 95 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? A VAL 97 ? A VAL 103 ? 1_555 94.1 ? 8 O ? A THR 95 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? A ILE 100 ? A ILE 106 ? 1_555 88.6 ? 9 O ? A VAL 97 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? A ILE 100 ? A ILE 106 ? 1_555 79.7 ? 10 O ? A THR 95 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 50.1 ? 11 O ? A VAL 97 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 131.0 ? 12 O ? A ILE 100 ? A ILE 106 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 506 ? 1_555 123.4 ? 13 O ? A THR 95 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 559 ? 1_555 97.0 ? 14 O ? A VAL 97 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 559 ? 1_555 98.2 ? 15 O ? A ILE 100 ? A ILE 106 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 559 ? 1_555 174.1 ? 16 O ? I HOH . ? A HOH 506 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 O ? I HOH . ? A HOH 559 ? 1_555 62.1 ? 17 O ? A THR 95 ? A THR 101 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 171.3 ? 18 O ? A VAL 97 ? A VAL 103 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 94.0 ? 19 O ? A ILE 100 ? A ILE 106 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 89.9 ? 20 O ? I HOH . ? A HOH 506 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 124.9 ? 21 O ? I HOH . ? A HOH 559 ? 1_555 NA ? G NA . ? A NA 403 ? 1_555 OP1 ? C DG 9 ? P DG 9 ? 1_555 84.8 ? 22 OD1 ? A ASP 184 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O2B ? H 1FZ . ? A 1FZ 404 ? 1_555 136.3 ? 23 OD1 ? A ASP 184 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O1G ? H 1FZ . ? A 1FZ 404 ? 1_555 86.0 ? 24 O2B ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O1G ? H 1FZ . ? A 1FZ 404 ? 1_555 81.3 ? 25 OD1 ? A ASP 184 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O1A ? H 1FZ . ? A 1FZ 404 ? 1_555 81.1 ? 26 O2B ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O1A ? H 1FZ . ? A 1FZ 404 ? 1_555 57.6 ? 27 O1G ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O1A ? H 1FZ . ? A 1FZ 404 ? 1_555 90.8 ? 28 OD1 ? A ASP 184 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 562 ? 1_555 125.4 ? 29 O2B ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 562 ? 1_555 78.7 ? 30 O1G ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 562 ? 1_555 54.6 ? 31 O1A ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 562 ? 1_555 128.7 ? 32 OD1 ? A ASP 184 ? A ASP 190 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 563 ? 1_555 78.8 ? 33 O2B ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 563 ? 1_555 85.8 ? 34 O1G ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 563 ? 1_555 141.7 ? 35 O1A ? H 1FZ . ? A 1FZ 404 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 563 ? 1_555 52.5 ? 36 O ? I HOH . ? A HOH 562 ? 1_555 MG ? E MG . ? A MG 401 ? 1_555 O ? I HOH . ? A HOH 563 ? 1_555 155.4 ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 268 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 274 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 269 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 275 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 144 ? PRO A 145 ? ILE A 150 PRO A 151 A 2 SER A 181 ? SER A 182 ? SER A 187 SER A 188 B 1 ILE A 168 ? VAL A 171 ? ILE A 174 VAL A 177 B 2 MET A 185 ? THR A 190 ? MET A 191 THR A 196 B 3 ARG A 247 ? LEU A 253 ? ARG A 253 LEU A 259 B 4 LYS A 228 ? CYS A 233 ? LYS A 234 CYS A 239 B 5 ILE A 218 ? LYS A 224 ? ILE A 224 LYS A 230 C 1 PHE A 285 ? ILE A 287 ? PHE A 291 ILE A 293 C 2 ILE A 292 ? PRO A 294 ? ILE A 298 PRO A 300 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 144 ? N ILE A 150 O SER A 182 ? O SER A 188 B 1 2 N ILE A 168 ? N ILE A 174 O THR A 190 ? O THR A 196 B 2 3 N LEU A 189 ? N LEU A 195 O ARG A 252 ? O ARG A 258 B 3 4 O ARG A 247 ? O ARG A 253 N CYS A 233 ? N CYS A 239 B 4 5 O MET A 230 ? O MET A 236 N SER A 223 ? N SER A 229 C 1 2 N THR A 286 ? N THR A 292 O ARG A 293 ? O ARG A 299 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 401 ? 4 'BINDING SITE FOR RESIDUE MG A 401' AC2 Software A NA 402 ? 4 'BINDING SITE FOR RESIDUE NA A 402' AC3 Software A NA 403 ? 6 'BINDING SITE FOR RESIDUE NA A 403' AC4 Software A 1FZ 404 ? 17 'BINDING SITE FOR RESIDUE 1FZ A 404' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASP A 184 ? ASP A 190 . ? 1_555 ? 2 AC1 4 1FZ H . ? 1FZ A 404 . ? 1_555 ? 3 AC1 4 HOH I . ? HOH A 562 . ? 1_555 ? 4 AC1 4 HOH I . ? HOH A 563 . ? 1_555 ? 5 AC2 4 LYS A 54 ? LYS A 60 . ? 1_555 ? 6 AC2 4 LEU A 56 ? LEU A 62 . ? 1_555 ? 7 AC2 4 VAL A 59 ? VAL A 65 . ? 1_555 ? 8 AC2 4 DC D 3 ? DC D 3 . ? 1_555 ? 9 AC3 6 THR A 95 ? THR A 101 . ? 1_555 ? 10 AC3 6 VAL A 97 ? VAL A 103 . ? 1_555 ? 11 AC3 6 ILE A 100 ? ILE A 106 . ? 1_555 ? 12 AC3 6 HOH I . ? HOH A 506 . ? 1_555 ? 13 AC3 6 HOH I . ? HOH A 559 . ? 1_555 ? 14 AC3 6 DG C 9 ? DG P 9 . ? 1_555 ? 15 AC4 17 ARG A 143 ? ARG A 149 . ? 1_555 ? 16 AC4 17 GLY A 173 ? GLY A 179 . ? 1_555 ? 17 AC4 17 SER A 174 ? SER A 180 . ? 1_555 ? 18 AC4 17 ARG A 177 ? ARG A 183 . ? 1_555 ? 19 AC4 17 GLY A 183 ? GLY A 189 . ? 1_555 ? 20 AC4 17 ASP A 184 ? ASP A 190 . ? 1_555 ? 21 AC4 17 TYR A 265 ? TYR A 271 . ? 1_555 ? 22 AC4 17 GLY A 268 ? GLY A 274 . ? 1_555 ? 23 AC4 17 SER A 269 ? SER A 275 . ? 1_555 ? 24 AC4 17 ASP A 270 ? ASP A 276 . ? 1_555 ? 25 AC4 17 ASN A 273 ? ASN A 279 . ? 1_555 ? 26 AC4 17 MG E . ? MG A 401 . ? 1_555 ? 27 AC4 17 HOH I . ? HOH A 526 . ? 1_555 ? 28 AC4 17 HOH I . ? HOH A 535 . ? 1_555 ? 29 AC4 17 HOH I . ? HOH A 562 . ? 1_555 ? 30 AC4 17 HOH I . ? HOH A 563 . ? 1_555 ? 31 AC4 17 DA C 10 ? DA P 10 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 D _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 D _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.479 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.128 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 10 ? ? -61.76 0.17 2 1 PRO A 50 ? ? -81.78 40.46 3 1 ASN A 128 ? ? -147.44 55.45 4 1 CYS A 178 ? ? -100.47 -145.02 5 1 ASN A 245 ? ? -139.05 -119.42 6 1 ASN A 294 ? ? -111.65 -168.85 7 1 ASP A 332 ? ? -109.22 56.33 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id FMG _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id T _pdbx_struct_mod_residue.auth_comp_id FMG _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 205 ? A THR 199 2 1 Y 1 A LYS 206 ? A LYS 200 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1FZ O2 O N N 1 1FZ O4 O N N 2 1FZ C4 C N N 3 1FZ C5 C N N 4 1FZ C6 C N N 5 1FZ C5M C N N 6 1FZ N3 N N N 7 1FZ C2 C N N 8 1FZ N1 N N N 9 1FZ "C1'" C N R 10 1FZ "C2'" C N N 11 1FZ "C3'" C N S 12 1FZ "O3'" O N N 13 1FZ "O4'" O N N 14 1FZ "C4'" C N R 15 1FZ "C5'" C N N 16 1FZ "O5'" O N N 17 1FZ PA P N N 18 1FZ O1A O N N 19 1FZ O2A O N N 20 1FZ N3A N N N 21 1FZ PB P N N 22 1FZ O1B O N N 23 1FZ O2B O N N 24 1FZ O3B O N N 25 1FZ PG P N N 26 1FZ O1G O N N 27 1FZ O3G O N N 28 1FZ O2G O N N 29 1FZ H1 H N N 30 1FZ H2 H N N 31 1FZ H3 H N N 32 1FZ H4 H N N 33 1FZ H5 H N N 34 1FZ H6 H N N 35 1FZ H7 H N N 36 1FZ H8 H N N 37 1FZ H9 H N N 38 1FZ H10 H N N 39 1FZ H11 H N N 40 1FZ H12 H N N 41 1FZ H13 H N N 42 1FZ H14 H N N 43 1FZ H15 H N N 44 1FZ H16 H N N 45 1FZ H17 H N N 46 1FZ H18 H N N 47 ALA N N N N 48 ALA CA C N S 49 ALA C C N N 50 ALA O O N N 51 ALA CB C N N 52 ALA OXT O N N 53 ALA H H N N 54 ALA H2 H N N 55 ALA HA H N N 56 ALA HB1 H N N 57 ALA HB2 H N N 58 ALA HB3 H N N 59 ALA HXT H N N 60 ARG N N N N 61 ARG CA C N S 62 ARG C C N N 63 ARG O O N N 64 ARG CB C N N 65 ARG CG C N N 66 ARG CD C N N 67 ARG NE N N N 68 ARG CZ C N N 69 ARG NH1 N N N 70 ARG NH2 N N N 71 ARG OXT O N N 72 ARG H H N N 73 ARG H2 H N N 74 ARG HA H N N 75 ARG HB2 H N N 76 ARG HB3 H N N 77 ARG HG2 H N N 78 ARG HG3 H N N 79 ARG HD2 H N N 80 ARG HD3 H N N 81 ARG HE H N N 82 ARG HH11 H N N 83 ARG HH12 H N N 84 ARG HH21 H N N 85 ARG HH22 H N N 86 ARG HXT H N N 87 ASN N N N N 88 ASN CA C N S 89 ASN C C N N 90 ASN O O N N 91 ASN CB C N N 92 ASN CG C N N 93 ASN OD1 O N N 94 ASN ND2 N N N 95 ASN OXT O N N 96 ASN H H N N 97 ASN H2 H N N 98 ASN HA H N N 99 ASN HB2 H N N 100 ASN HB3 H N N 101 ASN HD21 H N N 102 ASN HD22 H N N 103 ASN HXT H N N 104 ASP N N N N 105 ASP CA C N S 106 ASP C C N N 107 ASP O O N N 108 ASP CB C N N 109 ASP CG C N N 110 ASP OD1 O N N 111 ASP OD2 O N N 112 ASP OXT O N N 113 ASP H H N N 114 ASP H2 H N N 115 ASP HA H N N 116 ASP HB2 H N N 117 ASP HB3 H N N 118 ASP HD2 H N N 119 ASP HXT H N N 120 CYS N N N N 121 CYS CA C N R 122 CYS C C N N 123 CYS O O N N 124 CYS CB C N N 125 CYS SG S N N 126 CYS OXT O N N 127 CYS H H N N 128 CYS H2 H N N 129 CYS HA H N N 130 CYS HB2 H N N 131 CYS HB3 H N N 132 CYS HG H N N 133 CYS HXT H N N 134 DA OP3 O N N 135 DA P P N N 136 DA OP1 O N N 137 DA OP2 O N N 138 DA "O5'" O N N 139 DA "C5'" C N N 140 DA "C4'" C N R 141 DA "O4'" O N N 142 DA "C3'" C N S 143 DA "O3'" O N N 144 DA "C2'" C N N 145 DA "C1'" C N R 146 DA N9 N Y N 147 DA C8 C Y N 148 DA N7 N Y N 149 DA C5 C Y N 150 DA C6 C Y N 151 DA N6 N N N 152 DA N1 N Y N 153 DA C2 C Y N 154 DA N3 N Y N 155 DA C4 C Y N 156 DA HOP3 H N N 157 DA HOP2 H N N 158 DA "H5'" H N N 159 DA "H5''" H N N 160 DA "H4'" H N N 161 DA "H3'" H N N 162 DA "HO3'" H N N 163 DA "H2'" H N N 164 DA "H2''" H N N 165 DA "H1'" H N N 166 DA H8 H N N 167 DA H61 H N N 168 DA H62 H N N 169 DA H2 H N N 170 DC OP3 O N N 171 DC P P N N 172 DC OP1 O N N 173 DC OP2 O N N 174 DC "O5'" O N N 175 DC "C5'" C N N 176 DC "C4'" C N R 177 DC "O4'" O N N 178 DC "C3'" C N S 179 DC "O3'" O N N 180 DC "C2'" C N N 181 DC "C1'" C N R 182 DC N1 N N N 183 DC C2 C N N 184 DC O2 O N N 185 DC N3 N N N 186 DC C4 C N N 187 DC N4 N N N 188 DC C5 C N N 189 DC C6 C N N 190 DC HOP3 H N N 191 DC HOP2 H N N 192 DC "H5'" H N N 193 DC "H5''" H N N 194 DC "H4'" H N N 195 DC "H3'" H N N 196 DC "HO3'" H N N 197 DC "H2'" H N N 198 DC "H2''" H N N 199 DC "H1'" H N N 200 DC H41 H N N 201 DC H42 H N N 202 DC H5 H N N 203 DC H6 H N N 204 DG OP3 O N N 205 DG P P N N 206 DG OP1 O N N 207 DG OP2 O N N 208 DG "O5'" O N N 209 DG "C5'" C N N 210 DG "C4'" C N R 211 DG "O4'" O N N 212 DG "C3'" C N S 213 DG "O3'" O N N 214 DG "C2'" C N N 215 DG "C1'" C N R 216 DG N9 N Y N 217 DG C8 C Y N 218 DG N7 N Y N 219 DG C5 C Y N 220 DG C6 C N N 221 DG O6 O N N 222 DG N1 N N N 223 DG C2 C N N 224 DG N2 N N N 225 DG N3 N N N 226 DG C4 C Y N 227 DG HOP3 H N N 228 DG HOP2 H N N 229 DG "H5'" H N N 230 DG "H5''" H N N 231 DG "H4'" H N N 232 DG "H3'" H N N 233 DG "HO3'" H N N 234 DG "H2'" H N N 235 DG "H2''" H N N 236 DG "H1'" H N N 237 DG H8 H N N 238 DG H1 H N N 239 DG H21 H N N 240 DG H22 H N N 241 DT OP3 O N N 242 DT P P N N 243 DT OP1 O N N 244 DT OP2 O N N 245 DT "O5'" O N N 246 DT "C5'" C N N 247 DT "C4'" C N R 248 DT "O4'" O N N 249 DT "C3'" C N S 250 DT "O3'" O N N 251 DT "C2'" C N N 252 DT "C1'" C N R 253 DT N1 N N N 254 DT C2 C N N 255 DT O2 O N N 256 DT N3 N N N 257 DT C4 C N N 258 DT O4 O N N 259 DT C5 C N N 260 DT C7 C N N 261 DT C6 C N N 262 DT HOP3 H N N 263 DT HOP2 H N N 264 DT "H5'" H N N 265 DT "H5''" H N N 266 DT "H4'" H N N 267 DT "H3'" H N N 268 DT "HO3'" H N N 269 DT "H2'" H N N 270 DT "H2''" H N N 271 DT "H1'" H N N 272 DT H3 H N N 273 DT H71 H N N 274 DT H72 H N N 275 DT H73 H N N 276 DT H6 H N N 277 FMG P P N N 278 FMG OP2 O N N 279 FMG OP1 O N N 280 FMG OP3 O N N 281 FMG "O5'" O N N 282 FMG "F1'" F N N 283 FMG N9 N Y N 284 FMG C8 C Y N 285 FMG N7 N Y N 286 FMG CM7 C N N 287 FMG C5 C Y N 288 FMG C4 C Y N 289 FMG N3 N N N 290 FMG C2 C N N 291 FMG N2 N N N 292 FMG N1 N N N 293 FMG C6 C N N 294 FMG O6 O N N 295 FMG "C2'" C N S 296 FMG "C5'" C N N 297 FMG "C4'" C N R 298 FMG "O4'" O N N 299 FMG "C1'" C N R 300 FMG "C3'" C N R 301 FMG "O3'" O N N 302 FMG H8 H N N 303 FMG HM7 H N N 304 FMG HM7A H N N 305 FMG HM7B H N N 306 FMG HN2 H N N 307 FMG HN2A H N N 308 FMG HN1 H N N 309 FMG "H2'" H N N 310 FMG "H5'" H N N 311 FMG "H5'A" H N N 312 FMG "H4'" H N N 313 FMG "H1'" H N N 314 FMG "H3'" H N N 315 FMG "HO3'" H N N 316 FMG HOP2 H N N 317 FMG HOP3 H N N 318 GLN N N N N 319 GLN CA C N S 320 GLN C C N N 321 GLN O O N N 322 GLN CB C N N 323 GLN CG C N N 324 GLN CD C N N 325 GLN OE1 O N N 326 GLN NE2 N N N 327 GLN OXT O N N 328 GLN H H N N 329 GLN H2 H N N 330 GLN HA H N N 331 GLN HB2 H N N 332 GLN HB3 H N N 333 GLN HG2 H N N 334 GLN HG3 H N N 335 GLN HE21 H N N 336 GLN HE22 H N N 337 GLN HXT H N N 338 GLU N N N N 339 GLU CA C N S 340 GLU C C N N 341 GLU O O N N 342 GLU CB C N N 343 GLU CG C N N 344 GLU CD C N N 345 GLU OE1 O N N 346 GLU OE2 O N N 347 GLU OXT O N N 348 GLU H H N N 349 GLU H2 H N N 350 GLU HA H N N 351 GLU HB2 H N N 352 GLU HB3 H N N 353 GLU HG2 H N N 354 GLU HG3 H N N 355 GLU HE2 H N N 356 GLU HXT H N N 357 GLY N N N N 358 GLY CA C N N 359 GLY C C N N 360 GLY O O N N 361 GLY OXT O N N 362 GLY H H N N 363 GLY H2 H N N 364 GLY HA2 H N N 365 GLY HA3 H N N 366 GLY HXT H N N 367 HIS N N N N 368 HIS CA C N S 369 HIS C C N N 370 HIS O O N N 371 HIS CB C N N 372 HIS CG C Y N 373 HIS ND1 N Y N 374 HIS CD2 C Y N 375 HIS CE1 C Y N 376 HIS NE2 N Y N 377 HIS OXT O N N 378 HIS H H N N 379 HIS H2 H N N 380 HIS HA H N N 381 HIS HB2 H N N 382 HIS HB3 H N N 383 HIS HD1 H N N 384 HIS HD2 H N N 385 HIS HE1 H N N 386 HIS HE2 H N N 387 HIS HXT H N N 388 HOH O O N N 389 HOH H1 H N N 390 HOH H2 H N N 391 ILE N N N N 392 ILE CA C N S 393 ILE C C N N 394 ILE O O N N 395 ILE CB C N S 396 ILE CG1 C N N 397 ILE CG2 C N N 398 ILE CD1 C N N 399 ILE OXT O N N 400 ILE H H N N 401 ILE H2 H N N 402 ILE HA H N N 403 ILE HB H N N 404 ILE HG12 H N N 405 ILE HG13 H N N 406 ILE HG21 H N N 407 ILE HG22 H N N 408 ILE HG23 H N N 409 ILE HD11 H N N 410 ILE HD12 H N N 411 ILE HD13 H N N 412 ILE HXT H N N 413 LEU N N N N 414 LEU CA C N S 415 LEU C C N N 416 LEU O O N N 417 LEU CB C N N 418 LEU CG C N N 419 LEU CD1 C N N 420 LEU CD2 C N N 421 LEU OXT O N N 422 LEU H H N N 423 LEU H2 H N N 424 LEU HA H N N 425 LEU HB2 H N N 426 LEU HB3 H N N 427 LEU HG H N N 428 LEU HD11 H N N 429 LEU HD12 H N N 430 LEU HD13 H N N 431 LEU HD21 H N N 432 LEU HD22 H N N 433 LEU HD23 H N N 434 LEU HXT H N N 435 LYS N N N N 436 LYS CA C N S 437 LYS C C N N 438 LYS O O N N 439 LYS CB C N N 440 LYS CG C N N 441 LYS CD C N N 442 LYS CE C N N 443 LYS NZ N N N 444 LYS OXT O N N 445 LYS H H N N 446 LYS H2 H N N 447 LYS HA H N N 448 LYS HB2 H N N 449 LYS HB3 H N N 450 LYS HG2 H N N 451 LYS HG3 H N N 452 LYS HD2 H N N 453 LYS HD3 H N N 454 LYS HE2 H N N 455 LYS HE3 H N N 456 LYS HZ1 H N N 457 LYS HZ2 H N N 458 LYS HZ3 H N N 459 LYS HXT H N N 460 MET N N N N 461 MET CA C N S 462 MET C C N N 463 MET O O N N 464 MET CB C N N 465 MET CG C N N 466 MET SD S N N 467 MET CE C N N 468 MET OXT O N N 469 MET H H N N 470 MET H2 H N N 471 MET HA H N N 472 MET HB2 H N N 473 MET HB3 H N N 474 MET HG2 H N N 475 MET HG3 H N N 476 MET HE1 H N N 477 MET HE2 H N N 478 MET HE3 H N N 479 MET HXT H N N 480 MG MG MG N N 481 NA NA NA N N 482 PHE N N N N 483 PHE CA C N S 484 PHE C C N N 485 PHE O O N N 486 PHE CB C N N 487 PHE CG C Y N 488 PHE CD1 C Y N 489 PHE CD2 C Y N 490 PHE CE1 C Y N 491 PHE CE2 C Y N 492 PHE CZ C Y N 493 PHE OXT O N N 494 PHE H H N N 495 PHE H2 H N N 496 PHE HA H N N 497 PHE HB2 H N N 498 PHE HB3 H N N 499 PHE HD1 H N N 500 PHE HD2 H N N 501 PHE HE1 H N N 502 PHE HE2 H N N 503 PHE HZ H N N 504 PHE HXT H N N 505 PRO N N N N 506 PRO CA C N S 507 PRO C C N N 508 PRO O O N N 509 PRO CB C N N 510 PRO CG C N N 511 PRO CD C N N 512 PRO OXT O N N 513 PRO H H N N 514 PRO HA H N N 515 PRO HB2 H N N 516 PRO HB3 H N N 517 PRO HG2 H N N 518 PRO HG3 H N N 519 PRO HD2 H N N 520 PRO HD3 H N N 521 PRO HXT H N N 522 SER N N N N 523 SER CA C N S 524 SER C C N N 525 SER O O N N 526 SER CB C N N 527 SER OG O N N 528 SER OXT O N N 529 SER H H N N 530 SER H2 H N N 531 SER HA H N N 532 SER HB2 H N N 533 SER HB3 H N N 534 SER HG H N N 535 SER HXT H N N 536 THR N N N N 537 THR CA C N S 538 THR C C N N 539 THR O O N N 540 THR CB C N R 541 THR OG1 O N N 542 THR CG2 C N N 543 THR OXT O N N 544 THR H H N N 545 THR H2 H N N 546 THR HA H N N 547 THR HB H N N 548 THR HG1 H N N 549 THR HG21 H N N 550 THR HG22 H N N 551 THR HG23 H N N 552 THR HXT H N N 553 TRP N N N N 554 TRP CA C N S 555 TRP C C N N 556 TRP O O N N 557 TRP CB C N N 558 TRP CG C Y N 559 TRP CD1 C Y N 560 TRP CD2 C Y N 561 TRP NE1 N Y N 562 TRP CE2 C Y N 563 TRP CE3 C Y N 564 TRP CZ2 C Y N 565 TRP CZ3 C Y N 566 TRP CH2 C Y N 567 TRP OXT O N N 568 TRP H H N N 569 TRP H2 H N N 570 TRP HA H N N 571 TRP HB2 H N N 572 TRP HB3 H N N 573 TRP HD1 H N N 574 TRP HE1 H N N 575 TRP HE3 H N N 576 TRP HZ2 H N N 577 TRP HZ3 H N N 578 TRP HH2 H N N 579 TRP HXT H N N 580 TYR N N N N 581 TYR CA C N S 582 TYR C C N N 583 TYR O O N N 584 TYR CB C N N 585 TYR CG C Y N 586 TYR CD1 C Y N 587 TYR CD2 C Y N 588 TYR CE1 C Y N 589 TYR CE2 C Y N 590 TYR CZ C Y N 591 TYR OH O N N 592 TYR OXT O N N 593 TYR H H N N 594 TYR H2 H N N 595 TYR HA H N N 596 TYR HB2 H N N 597 TYR HB3 H N N 598 TYR HD1 H N N 599 TYR HD2 H N N 600 TYR HE1 H N N 601 TYR HE2 H N N 602 TYR HH H N N 603 TYR HXT H N N 604 VAL N N N N 605 VAL CA C N S 606 VAL C C N N 607 VAL O O N N 608 VAL CB C N N 609 VAL CG1 C N N 610 VAL CG2 C N N 611 VAL OXT O N N 612 VAL H H N N 613 VAL H2 H N N 614 VAL HA H N N 615 VAL HB H N N 616 VAL HG11 H N N 617 VAL HG12 H N N 618 VAL HG13 H N N 619 VAL HG21 H N N 620 VAL HG22 H N N 621 VAL HG23 H N N 622 VAL HXT H N N 623 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1FZ O3G PG doub N N 1 1FZ O1G PG sing N N 2 1FZ O2G PG sing N N 3 1FZ PG O3B sing N N 4 1FZ O1A PA doub N N 5 1FZ O3B PB sing N N 6 1FZ O2B PB doub N N 7 1FZ PB N3A sing N N 8 1FZ PB O1B sing N N 9 1FZ PA N3A sing N N 10 1FZ PA O2A sing N N 11 1FZ PA "O5'" sing N N 12 1FZ "C5'" "O5'" sing N N 13 1FZ "C5'" "C4'" sing N N 14 1FZ "O3'" "C3'" sing N N 15 1FZ "C4'" "C3'" sing N N 16 1FZ "C4'" "O4'" sing N N 17 1FZ "C3'" "C2'" sing N N 18 1FZ "O4'" "C1'" sing N N 19 1FZ C5M C5 sing N N 20 1FZ "C2'" "C1'" sing N N 21 1FZ C6 C5 doub N N 22 1FZ C6 N1 sing N N 23 1FZ "C1'" N1 sing N N 24 1FZ C5 C4 sing N N 25 1FZ N1 C2 sing N N 26 1FZ C4 O4 doub N N 27 1FZ C4 N3 sing N N 28 1FZ C2 N3 sing N N 29 1FZ C2 O2 doub N N 30 1FZ C6 H1 sing N N 31 1FZ C5M H2 sing N N 32 1FZ C5M H3 sing N N 33 1FZ C5M H4 sing N N 34 1FZ N3 H5 sing N N 35 1FZ "C1'" H6 sing N N 36 1FZ "C2'" H7 sing N N 37 1FZ "C2'" H8 sing N N 38 1FZ "C3'" H9 sing N N 39 1FZ "O3'" H10 sing N N 40 1FZ "C4'" H11 sing N N 41 1FZ "C5'" H12 sing N N 42 1FZ "C5'" H13 sing N N 43 1FZ O2A H14 sing N N 44 1FZ N3A H15 sing N N 45 1FZ O1B H16 sing N N 46 1FZ O1G H17 sing N N 47 1FZ O2G H18 sing N N 48 ALA N CA sing N N 49 ALA N H sing N N 50 ALA N H2 sing N N 51 ALA CA C sing N N 52 ALA CA CB sing N N 53 ALA CA HA sing N N 54 ALA C O doub N N 55 ALA C OXT sing N N 56 ALA CB HB1 sing N N 57 ALA CB HB2 sing N N 58 ALA CB HB3 sing N N 59 ALA OXT HXT sing N N 60 ARG N CA sing N N 61 ARG N H sing N N 62 ARG N H2 sing N N 63 ARG CA C sing N N 64 ARG CA CB sing N N 65 ARG CA HA sing N N 66 ARG C O doub N N 67 ARG C OXT sing N N 68 ARG CB CG sing N N 69 ARG CB HB2 sing N N 70 ARG CB HB3 sing N N 71 ARG CG CD sing N N 72 ARG CG HG2 sing N N 73 ARG CG HG3 sing N N 74 ARG CD NE sing N N 75 ARG CD HD2 sing N N 76 ARG CD HD3 sing N N 77 ARG NE CZ sing N N 78 ARG NE HE sing N N 79 ARG CZ NH1 sing N N 80 ARG CZ NH2 doub N N 81 ARG NH1 HH11 sing N N 82 ARG NH1 HH12 sing N N 83 ARG NH2 HH21 sing N N 84 ARG NH2 HH22 sing N N 85 ARG OXT HXT sing N N 86 ASN N CA sing N N 87 ASN N H sing N N 88 ASN N H2 sing N N 89 ASN CA C sing N N 90 ASN CA CB sing N N 91 ASN CA HA sing N N 92 ASN C O doub N N 93 ASN C OXT sing N N 94 ASN CB CG sing N N 95 ASN CB HB2 sing N N 96 ASN CB HB3 sing N N 97 ASN CG OD1 doub N N 98 ASN CG ND2 sing N N 99 ASN ND2 HD21 sing N N 100 ASN ND2 HD22 sing N N 101 ASN OXT HXT sing N N 102 ASP N CA sing N N 103 ASP N H sing N N 104 ASP N H2 sing N N 105 ASP CA C sing N N 106 ASP CA CB sing N N 107 ASP CA HA sing N N 108 ASP C O doub N N 109 ASP C OXT sing N N 110 ASP CB CG sing N N 111 ASP CB HB2 sing N N 112 ASP CB HB3 sing N N 113 ASP CG OD1 doub N N 114 ASP CG OD2 sing N N 115 ASP OD2 HD2 sing N N 116 ASP OXT HXT sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 DA OP3 P sing N N 131 DA OP3 HOP3 sing N N 132 DA P OP1 doub N N 133 DA P OP2 sing N N 134 DA P "O5'" sing N N 135 DA OP2 HOP2 sing N N 136 DA "O5'" "C5'" sing N N 137 DA "C5'" "C4'" sing N N 138 DA "C5'" "H5'" sing N N 139 DA "C5'" "H5''" sing N N 140 DA "C4'" "O4'" sing N N 141 DA "C4'" "C3'" sing N N 142 DA "C4'" "H4'" sing N N 143 DA "O4'" "C1'" sing N N 144 DA "C3'" "O3'" sing N N 145 DA "C3'" "C2'" sing N N 146 DA "C3'" "H3'" sing N N 147 DA "O3'" "HO3'" sing N N 148 DA "C2'" "C1'" sing N N 149 DA "C2'" "H2'" sing N N 150 DA "C2'" "H2''" sing N N 151 DA "C1'" N9 sing N N 152 DA "C1'" "H1'" sing N N 153 DA N9 C8 sing Y N 154 DA N9 C4 sing Y N 155 DA C8 N7 doub Y N 156 DA C8 H8 sing N N 157 DA N7 C5 sing Y N 158 DA C5 C6 sing Y N 159 DA C5 C4 doub Y N 160 DA C6 N6 sing N N 161 DA C6 N1 doub Y N 162 DA N6 H61 sing N N 163 DA N6 H62 sing N N 164 DA N1 C2 sing Y N 165 DA C2 N3 doub Y N 166 DA C2 H2 sing N N 167 DA N3 C4 sing Y N 168 DC OP3 P sing N N 169 DC OP3 HOP3 sing N N 170 DC P OP1 doub N N 171 DC P OP2 sing N N 172 DC P "O5'" sing N N 173 DC OP2 HOP2 sing N N 174 DC "O5'" "C5'" sing N N 175 DC "C5'" "C4'" sing N N 176 DC "C5'" "H5'" sing N N 177 DC "C5'" "H5''" sing N N 178 DC "C4'" "O4'" sing N N 179 DC "C4'" "C3'" sing N N 180 DC "C4'" "H4'" sing N N 181 DC "O4'" "C1'" sing N N 182 DC "C3'" "O3'" sing N N 183 DC "C3'" "C2'" sing N N 184 DC "C3'" "H3'" sing N N 185 DC "O3'" "HO3'" sing N N 186 DC "C2'" "C1'" sing N N 187 DC "C2'" "H2'" sing N N 188 DC "C2'" "H2''" sing N N 189 DC "C1'" N1 sing N N 190 DC "C1'" "H1'" sing N N 191 DC N1 C2 sing N N 192 DC N1 C6 sing N N 193 DC C2 O2 doub N N 194 DC C2 N3 sing N N 195 DC N3 C4 doub N N 196 DC C4 N4 sing N N 197 DC C4 C5 sing N N 198 DC N4 H41 sing N N 199 DC N4 H42 sing N N 200 DC C5 C6 doub N N 201 DC C5 H5 sing N N 202 DC C6 H6 sing N N 203 DG OP3 P sing N N 204 DG OP3 HOP3 sing N N 205 DG P OP1 doub N N 206 DG P OP2 sing N N 207 DG P "O5'" sing N N 208 DG OP2 HOP2 sing N N 209 DG "O5'" "C5'" sing N N 210 DG "C5'" "C4'" sing N N 211 DG "C5'" "H5'" sing N N 212 DG "C5'" "H5''" sing N N 213 DG "C4'" "O4'" sing N N 214 DG "C4'" "C3'" sing N N 215 DG "C4'" "H4'" sing N N 216 DG "O4'" "C1'" sing N N 217 DG "C3'" "O3'" sing N N 218 DG "C3'" "C2'" sing N N 219 DG "C3'" "H3'" sing N N 220 DG "O3'" "HO3'" sing N N 221 DG "C2'" "C1'" sing N N 222 DG "C2'" "H2'" sing N N 223 DG "C2'" "H2''" sing N N 224 DG "C1'" N9 sing N N 225 DG "C1'" "H1'" sing N N 226 DG N9 C8 sing Y N 227 DG N9 C4 sing Y N 228 DG C8 N7 doub Y N 229 DG C8 H8 sing N N 230 DG N7 C5 sing Y N 231 DG C5 C6 sing N N 232 DG C5 C4 doub Y N 233 DG C6 O6 doub N N 234 DG C6 N1 sing N N 235 DG N1 C2 sing N N 236 DG N1 H1 sing N N 237 DG C2 N2 sing N N 238 DG C2 N3 doub N N 239 DG N2 H21 sing N N 240 DG N2 H22 sing N N 241 DG N3 C4 sing N N 242 DT OP3 P sing N N 243 DT OP3 HOP3 sing N N 244 DT P OP1 doub N N 245 DT P OP2 sing N N 246 DT P "O5'" sing N N 247 DT OP2 HOP2 sing N N 248 DT "O5'" "C5'" sing N N 249 DT "C5'" "C4'" sing N N 250 DT "C5'" "H5'" sing N N 251 DT "C5'" "H5''" sing N N 252 DT "C4'" "O4'" sing N N 253 DT "C4'" "C3'" sing N N 254 DT "C4'" "H4'" sing N N 255 DT "O4'" "C1'" sing N N 256 DT "C3'" "O3'" sing N N 257 DT "C3'" "C2'" sing N N 258 DT "C3'" "H3'" sing N N 259 DT "O3'" "HO3'" sing N N 260 DT "C2'" "C1'" sing N N 261 DT "C2'" "H2'" sing N N 262 DT "C2'" "H2''" sing N N 263 DT "C1'" N1 sing N N 264 DT "C1'" "H1'" sing N N 265 DT N1 C2 sing N N 266 DT N1 C6 sing N N 267 DT C2 O2 doub N N 268 DT C2 N3 sing N N 269 DT N3 C4 sing N N 270 DT N3 H3 sing N N 271 DT C4 O4 doub N N 272 DT C4 C5 sing N N 273 DT C5 C7 sing N N 274 DT C5 C6 doub N N 275 DT C7 H71 sing N N 276 DT C7 H72 sing N N 277 DT C7 H73 sing N N 278 DT C6 H6 sing N N 279 FMG P OP2 sing N N 280 FMG P OP1 doub N N 281 FMG P OP3 sing N N 282 FMG P "O5'" sing N N 283 FMG "O5'" "C5'" sing N N 284 FMG "F1'" "C2'" sing N N 285 FMG N9 C8 sing Y N 286 FMG N9 C4 sing Y N 287 FMG N9 "C1'" sing N N 288 FMG C8 N7 doub Y N 289 FMG C8 H8 sing N N 290 FMG N7 CM7 sing N N 291 FMG N7 C5 sing Y N 292 FMG CM7 HM7 sing N N 293 FMG CM7 HM7A sing N N 294 FMG CM7 HM7B sing N N 295 FMG C5 C4 doub Y N 296 FMG C5 C6 sing N N 297 FMG C4 N3 sing N N 298 FMG N3 C2 doub N N 299 FMG C2 N2 sing N N 300 FMG C2 N1 sing N N 301 FMG N2 HN2 sing N N 302 FMG N2 HN2A sing N N 303 FMG N1 C6 sing N N 304 FMG N1 HN1 sing N N 305 FMG C6 O6 doub N N 306 FMG "C2'" "C1'" sing N N 307 FMG "C2'" "C3'" sing N N 308 FMG "C2'" "H2'" sing N N 309 FMG "C5'" "C4'" sing N N 310 FMG "C5'" "H5'" sing N N 311 FMG "C5'" "H5'A" sing N N 312 FMG "C4'" "O4'" sing N N 313 FMG "C4'" "C3'" sing N N 314 FMG "C4'" "H4'" sing N N 315 FMG "O4'" "C1'" sing N N 316 FMG "C1'" "H1'" sing N N 317 FMG "C3'" "O3'" sing N N 318 FMG "C3'" "H3'" sing N N 319 FMG "O3'" "HO3'" sing N N 320 FMG OP2 HOP2 sing N N 321 FMG OP3 HOP3 sing N N 322 GLN N CA sing N N 323 GLN N H sing N N 324 GLN N H2 sing N N 325 GLN CA C sing N N 326 GLN CA CB sing N N 327 GLN CA HA sing N N 328 GLN C O doub N N 329 GLN C OXT sing N N 330 GLN CB CG sing N N 331 GLN CB HB2 sing N N 332 GLN CB HB3 sing N N 333 GLN CG CD sing N N 334 GLN CG HG2 sing N N 335 GLN CG HG3 sing N N 336 GLN CD OE1 doub N N 337 GLN CD NE2 sing N N 338 GLN NE2 HE21 sing N N 339 GLN NE2 HE22 sing N N 340 GLN OXT HXT sing N N 341 GLU N CA sing N N 342 GLU N H sing N N 343 GLU N H2 sing N N 344 GLU CA C sing N N 345 GLU CA CB sing N N 346 GLU CA HA sing N N 347 GLU C O doub N N 348 GLU C OXT sing N N 349 GLU CB CG sing N N 350 GLU CB HB2 sing N N 351 GLU CB HB3 sing N N 352 GLU CG CD sing N N 353 GLU CG HG2 sing N N 354 GLU CG HG3 sing N N 355 GLU CD OE1 doub N N 356 GLU CD OE2 sing N N 357 GLU OE2 HE2 sing N N 358 GLU OXT HXT sing N N 359 GLY N CA sing N N 360 GLY N H sing N N 361 GLY N H2 sing N N 362 GLY CA C sing N N 363 GLY CA HA2 sing N N 364 GLY CA HA3 sing N N 365 GLY C O doub N N 366 GLY C OXT sing N N 367 GLY OXT HXT sing N N 368 HIS N CA sing N N 369 HIS N H sing N N 370 HIS N H2 sing N N 371 HIS CA C sing N N 372 HIS CA CB sing N N 373 HIS CA HA sing N N 374 HIS C O doub N N 375 HIS C OXT sing N N 376 HIS CB CG sing N N 377 HIS CB HB2 sing N N 378 HIS CB HB3 sing N N 379 HIS CG ND1 sing Y N 380 HIS CG CD2 doub Y N 381 HIS ND1 CE1 doub Y N 382 HIS ND1 HD1 sing N N 383 HIS CD2 NE2 sing Y N 384 HIS CD2 HD2 sing N N 385 HIS CE1 NE2 sing Y N 386 HIS CE1 HE1 sing N N 387 HIS NE2 HE2 sing N N 388 HIS OXT HXT sing N N 389 HOH O H1 sing N N 390 HOH O H2 sing N N 391 ILE N CA sing N N 392 ILE N H sing N N 393 ILE N H2 sing N N 394 ILE CA C sing N N 395 ILE CA CB sing N N 396 ILE CA HA sing N N 397 ILE C O doub N N 398 ILE C OXT sing N N 399 ILE CB CG1 sing N N 400 ILE CB CG2 sing N N 401 ILE CB HB sing N N 402 ILE CG1 CD1 sing N N 403 ILE CG1 HG12 sing N N 404 ILE CG1 HG13 sing N N 405 ILE CG2 HG21 sing N N 406 ILE CG2 HG22 sing N N 407 ILE CG2 HG23 sing N N 408 ILE CD1 HD11 sing N N 409 ILE CD1 HD12 sing N N 410 ILE CD1 HD13 sing N N 411 ILE OXT HXT sing N N 412 LEU N CA sing N N 413 LEU N H sing N N 414 LEU N H2 sing N N 415 LEU CA C sing N N 416 LEU CA CB sing N N 417 LEU CA HA sing N N 418 LEU C O doub N N 419 LEU C OXT sing N N 420 LEU CB CG sing N N 421 LEU CB HB2 sing N N 422 LEU CB HB3 sing N N 423 LEU CG CD1 sing N N 424 LEU CG CD2 sing N N 425 LEU CG HG sing N N 426 LEU CD1 HD11 sing N N 427 LEU CD1 HD12 sing N N 428 LEU CD1 HD13 sing N N 429 LEU CD2 HD21 sing N N 430 LEU CD2 HD22 sing N N 431 LEU CD2 HD23 sing N N 432 LEU OXT HXT sing N N 433 LYS N CA sing N N 434 LYS N H sing N N 435 LYS N H2 sing N N 436 LYS CA C sing N N 437 LYS CA CB sing N N 438 LYS CA HA sing N N 439 LYS C O doub N N 440 LYS C OXT sing N N 441 LYS CB CG sing N N 442 LYS CB HB2 sing N N 443 LYS CB HB3 sing N N 444 LYS CG CD sing N N 445 LYS CG HG2 sing N N 446 LYS CG HG3 sing N N 447 LYS CD CE sing N N 448 LYS CD HD2 sing N N 449 LYS CD HD3 sing N N 450 LYS CE NZ sing N N 451 LYS CE HE2 sing N N 452 LYS CE HE3 sing N N 453 LYS NZ HZ1 sing N N 454 LYS NZ HZ2 sing N N 455 LYS NZ HZ3 sing N N 456 LYS OXT HXT sing N N 457 MET N CA sing N N 458 MET N H sing N N 459 MET N H2 sing N N 460 MET CA C sing N N 461 MET CA CB sing N N 462 MET CA HA sing N N 463 MET C O doub N N 464 MET C OXT sing N N 465 MET CB CG sing N N 466 MET CB HB2 sing N N 467 MET CB HB3 sing N N 468 MET CG SD sing N N 469 MET CG HG2 sing N N 470 MET CG HG3 sing N N 471 MET SD CE sing N N 472 MET CE HE1 sing N N 473 MET CE HE2 sing N N 474 MET CE HE3 sing N N 475 MET OXT HXT sing N N 476 PHE N CA sing N N 477 PHE N H sing N N 478 PHE N H2 sing N N 479 PHE CA C sing N N 480 PHE CA CB sing N N 481 PHE CA HA sing N N 482 PHE C O doub N N 483 PHE C OXT sing N N 484 PHE CB CG sing N N 485 PHE CB HB2 sing N N 486 PHE CB HB3 sing N N 487 PHE CG CD1 doub Y N 488 PHE CG CD2 sing Y N 489 PHE CD1 CE1 sing Y N 490 PHE CD1 HD1 sing N N 491 PHE CD2 CE2 doub Y N 492 PHE CD2 HD2 sing N N 493 PHE CE1 CZ doub Y N 494 PHE CE1 HE1 sing N N 495 PHE CE2 CZ sing Y N 496 PHE CE2 HE2 sing N N 497 PHE CZ HZ sing N N 498 PHE OXT HXT sing N N 499 PRO N CA sing N N 500 PRO N CD sing N N 501 PRO N H sing N N 502 PRO CA C sing N N 503 PRO CA CB sing N N 504 PRO CA HA sing N N 505 PRO C O doub N N 506 PRO C OXT sing N N 507 PRO CB CG sing N N 508 PRO CB HB2 sing N N 509 PRO CB HB3 sing N N 510 PRO CG CD sing N N 511 PRO CG HG2 sing N N 512 PRO CG HG3 sing N N 513 PRO CD HD2 sing N N 514 PRO CD HD3 sing N N 515 PRO OXT HXT sing N N 516 SER N CA sing N N 517 SER N H sing N N 518 SER N H2 sing N N 519 SER CA C sing N N 520 SER CA CB sing N N 521 SER CA HA sing N N 522 SER C O doub N N 523 SER C OXT sing N N 524 SER CB OG sing N N 525 SER CB HB2 sing N N 526 SER CB HB3 sing N N 527 SER OG HG sing N N 528 SER OXT HXT sing N N 529 THR N CA sing N N 530 THR N H sing N N 531 THR N H2 sing N N 532 THR CA C sing N N 533 THR CA CB sing N N 534 THR CA HA sing N N 535 THR C O doub N N 536 THR C OXT sing N N 537 THR CB OG1 sing N N 538 THR CB CG2 sing N N 539 THR CB HB sing N N 540 THR OG1 HG1 sing N N 541 THR CG2 HG21 sing N N 542 THR CG2 HG22 sing N N 543 THR CG2 HG23 sing N N 544 THR OXT HXT sing N N 545 TRP N CA sing N N 546 TRP N H sing N N 547 TRP N H2 sing N N 548 TRP CA C sing N N 549 TRP CA CB sing N N 550 TRP CA HA sing N N 551 TRP C O doub N N 552 TRP C OXT sing N N 553 TRP CB CG sing N N 554 TRP CB HB2 sing N N 555 TRP CB HB3 sing N N 556 TRP CG CD1 doub Y N 557 TRP CG CD2 sing Y N 558 TRP CD1 NE1 sing Y N 559 TRP CD1 HD1 sing N N 560 TRP CD2 CE2 doub Y N 561 TRP CD2 CE3 sing Y N 562 TRP NE1 CE2 sing Y N 563 TRP NE1 HE1 sing N N 564 TRP CE2 CZ2 sing Y N 565 TRP CE3 CZ3 doub Y N 566 TRP CE3 HE3 sing N N 567 TRP CZ2 CH2 doub Y N 568 TRP CZ2 HZ2 sing N N 569 TRP CZ3 CH2 sing Y N 570 TRP CZ3 HZ3 sing N N 571 TRP CH2 HH2 sing N N 572 TRP OXT HXT sing N N 573 TYR N CA sing N N 574 TYR N H sing N N 575 TYR N H2 sing N N 576 TYR CA C sing N N 577 TYR CA CB sing N N 578 TYR CA HA sing N N 579 TYR C O doub N N 580 TYR C OXT sing N N 581 TYR CB CG sing N N 582 TYR CB HB2 sing N N 583 TYR CB HB3 sing N N 584 TYR CG CD1 doub Y N 585 TYR CG CD2 sing Y N 586 TYR CD1 CE1 sing Y N 587 TYR CD1 HD1 sing N N 588 TYR CD2 CE2 doub Y N 589 TYR CD2 HD2 sing N N 590 TYR CE1 CZ doub Y N 591 TYR CE1 HE1 sing N N 592 TYR CE2 CZ sing Y N 593 TYR CE2 HE2 sing N N 594 TYR CZ OH sing N N 595 TYR OH HH sing N N 596 TYR OXT HXT sing N N 597 VAL N CA sing N N 598 VAL N H sing N N 599 VAL N H2 sing N N 600 VAL CA C sing N N 601 VAL CA CB sing N N 602 VAL CA HA sing N N 603 VAL C O doub N N 604 VAL C OXT sing N N 605 VAL CB CG1 sing N N 606 VAL CB CG2 sing N N 607 VAL CB HB sing N N 608 VAL CG1 HG11 sing N N 609 VAL CG1 HG12 sing N N 610 VAL CG1 HG13 sing N N 611 VAL CG2 HG21 sing N N 612 VAL CG2 HG22 sing N N 613 VAL CG2 HG23 sing N N 614 VAL OXT HXT sing N N 615 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4O5E 'double helix' 4O5E 'b-form double helix' 4O5E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 D DG 5 1_555 -0.606 -0.115 0.727 -9.823 -14.866 -0.250 1 T_DC1:DG5_D T 1 ? D 5 ? 19 1 1 B DC 2 1_555 D DG 4 1_555 0.316 -0.444 0.145 -1.955 -8.560 -0.527 2 T_DC2:DG4_D T 2 ? D 4 ? 19 1 1 B DG 3 1_555 D DC 3 1_555 0.025 -0.151 0.062 3.298 -9.133 -1.753 3 T_DG3:DC3_D T 3 ? D 3 ? 19 1 1 B DA 4 1_555 D DT 2 1_555 0.134 0.165 0.534 6.744 -9.638 2.542 4 T_DA4:DT2_D T 4 ? D 2 ? 20 1 1 B DC 5 1_555 D DG 1 1_555 0.158 -0.171 0.179 8.433 0.484 2.636 5 T_DC5:DG1_D T 5 ? D 1 ? 19 1 1 B DT 7 1_555 C DA 10 1_555 -0.362 -0.090 -0.106 -21.530 0.395 7.205 6 T_DT7:DA10_P T 7 ? P 10 ? 20 1 1 B DC 8 1_555 C DG 9 1_555 1.007 -0.162 -0.586 7.230 -18.860 9.403 7 T_DC8:DG9_P T 8 ? P 9 ? 19 1 1 B DG 9 1_555 C DC 8 1_555 -0.218 -0.029 0.075 -1.600 -11.968 2.071 8 T_DG9:DC8_P T 9 ? P 8 ? 19 1 1 B DC 10 1_555 C DG 7 1_555 0.195 -0.200 0.704 0.913 -10.911 -2.412 9 T_DC10:DG7_P T 10 ? P 7 ? 19 1 1 B DA 11 1_555 C DT 6 1_555 -0.026 0.006 0.640 5.817 -15.909 0.355 10 T_DA11:DT6_P T 11 ? P 6 ? 20 1 1 B DT 12 1_555 C DA 5 1_555 0.020 -0.057 0.197 9.578 -13.301 3.982 11 T_DT12:DA5_P T 12 ? P 5 ? 20 1 1 B DC 13 1_555 C DG 4 1_555 0.066 -0.283 0.353 -1.940 -14.531 -2.162 12 T_DC13:DG4_P T 13 ? P 4 ? 19 1 1 B DA 14 1_555 C DT 3 1_555 -0.075 -0.097 0.197 0.799 -7.956 -2.174 13 T_DA14:DT3_P T 14 ? P 3 ? 20 1 1 B DG 15 1_555 C DC 2 1_555 0.036 -0.216 0.157 1.209 -7.692 3.483 14 T_DG15:DC2_P T 15 ? P 2 ? 19 1 1 B DC 16 1_555 C DG 1 1_555 -0.122 -0.114 -0.032 16.207 -19.883 4.286 15 T_DC16:DG1_P T 16 ? P 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 D DG 5 1_555 B DC 2 1_555 D DG 4 1_555 1.009 0.762 3.178 5.655 -0.738 42.753 1.109 -0.822 3.267 -1.007 -7.716 43.114 1 TT_DC1DC2:DG4DG5_DD T 1 ? D 5 ? T 2 ? D 4 ? 1 B DC 2 1_555 D DG 4 1_555 B DG 3 1_555 D DC 3 1_555 -0.957 0.651 3.166 -2.517 6.545 32.835 0.055 1.246 3.293 11.416 4.391 33.555 2 TT_DC2DG3:DC3DG4_DD T 2 ? D 4 ? T 3 ? D 3 ? 1 B DG 3 1_555 D DC 3 1_555 B DA 4 1_555 D DT 2 1_555 -0.316 -0.221 3.129 -5.284 0.491 36.291 -0.417 -0.196 3.140 0.784 8.428 36.664 3 TT_DG3DA4:DT2DC3_DD T 3 ? D 3 ? T 4 ? D 2 ? 1 B DA 4 1_555 D DT 2 1_555 B DC 5 1_555 D DG 1 1_555 0.635 -0.589 3.368 0.640 0.702 27.977 -1.388 -1.157 3.366 1.451 -1.323 27.993 4 TT_DA4DC5:DG1DT2_DD T 4 ? D 2 ? T 5 ? D 1 ? 1 B DT 7 1_555 C DA 10 1_555 B DC 8 1_555 C DG 9 1_555 -0.090 0.786 2.803 8.293 7.895 29.845 0.159 1.498 2.793 14.667 -15.406 31.919 5 TT_DT7DC8:DG9DA10_PP T 7 ? P 10 ? T 8 ? P 9 ? 1 B DC 8 1_555 C DG 9 1_555 B DG 9 1_555 C DC 8 1_555 -1.247 1.071 3.593 -10.231 12.920 31.856 -0.533 0.227 3.935 21.810 17.272 35.768 6 TT_DC8DG9:DC8DG9_PP T 8 ? P 9 ? T 9 ? P 8 ? 1 B DG 9 1_555 C DC 8 1_555 B DC 10 1_555 C DG 7 1_555 -0.463 -0.578 3.174 -6.430 4.287 30.564 -1.842 -0.315 3.097 7.973 11.959 31.503 7 TT_DG9DC10:DG7DC8_PP T 9 ? P 8 ? T 10 ? P 7 ? 1 B DC 10 1_555 C DG 7 1_555 B DA 11 1_555 C DT 6 1_555 -0.014 -0.192 2.926 1.555 2.085 36.704 -0.558 0.210 2.908 3.305 -2.465 36.793 8 TT_DC10DA11:DT6DG7_PP T 10 ? P 7 ? T 11 ? P 6 ? 1 B DA 11 1_555 C DT 6 1_555 B DT 12 1_555 C DA 5 1_555 0.478 -0.580 3.234 2.870 -1.588 31.671 -0.768 -0.348 3.288 -2.899 -5.241 31.836 9 TT_DA11DT12:DA5DT6_PP T 11 ? P 6 ? T 12 ? P 5 ? 1 B DT 12 1_555 C DA 5 1_555 B DC 13 1_555 C DG 4 1_555 0.141 -0.189 3.457 0.084 -6.061 41.813 0.398 -0.187 3.451 -8.439 -0.117 42.231 10 TT_DT12DC13:DG4DA5_PP T 12 ? P 5 ? T 13 ? P 4 ? 1 B DC 13 1_555 C DG 4 1_555 B DA 14 1_555 C DT 3 1_555 -0.381 -0.105 3.067 2.747 5.973 35.156 -0.973 0.989 2.973 9.784 -4.499 35.746 11 TT_DC13DA14:DT3DG4_PP T 13 ? P 4 ? T 14 ? P 3 ? 1 B DA 14 1_555 C DT 3 1_555 B DG 15 1_555 C DC 2 1_555 0.473 -0.537 3.270 -2.260 3.341 32.591 -1.515 -1.220 3.161 5.925 4.008 32.833 12 TT_DA14DG15:DC2DT3_PP T 14 ? P 3 ? T 15 ? P 2 ? 1 B DG 15 1_555 C DC 2 1_555 B DC 16 1_555 C DG 1 1_555 0.290 -0.610 2.880 -0.121 4.240 31.853 -1.762 -0.542 2.777 7.683 0.219 32.127 13 TT_DG15DC16:DG1DC2_PP T 15 ? P 2 ? T 16 ? P 1 ? # _atom_sites.entry_id 4O5E _atom_sites.fract_transf_matrix[1][1] 0.018374 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005259 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012671 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018974 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F MG N NA O P S # loop_