HEADER VIRAL PROTEIN 19-DEC-13 4O5N TITLE CRYSTAL STRUCTURE OF A/VICTORIA/361/2011 (H3N2) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 1331560; SOURCE 4 STRAIN: A/SINGAPORE/H2011.447/2011(H3N2); SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_TAXID: 1331560; SOURCE 11 STRAIN: A/SINGAPORE/H2011.447/2011(H3N2); SOURCE 12 GENE: HA; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS VIRAL FUSION PROTEIN, VIRUS ATTACHMENT AND ENTRY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.S.LEE,I.A.WILSON REVDAT 5 20-NOV-24 4O5N 1 REMARK REVDAT 4 20-SEP-23 4O5N 1 HETSYN REVDAT 3 29-JUL-20 4O5N 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 14-MAY-14 4O5N 1 JRNL REVDAT 1 16-APR-14 4O5N 0 JRNL AUTH P.S.LEE,N.OHSHIMA,R.L.STANFIELD,W.YU,Y.IBA,Y.OKUNO, JRNL AUTH 2 Y.KUROSAWA,I.A.WILSON JRNL TITL RECEPTOR MIMICRY BY ANTIBODY F045-092 FACILITATES UNIVERSAL JRNL TITL 2 BINDING TO THE H3 SUBTYPE OF INFLUENZA VIRUS. JRNL REF NAT COMMUN V. 5 3614 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24717798 JRNL DOI 10.1038/NCOMMS4614 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 75930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8555 - 5.2477 0.99 2874 134 0.1838 0.1942 REMARK 3 2 5.2477 - 4.1660 1.00 2726 164 0.1403 0.1475 REMARK 3 3 4.1660 - 3.6397 1.00 2717 153 0.1463 0.1544 REMARK 3 4 3.6397 - 3.3070 1.00 2702 154 0.1623 0.1728 REMARK 3 5 3.3070 - 3.0700 1.00 2660 161 0.1676 0.1885 REMARK 3 6 3.0700 - 2.8890 1.00 2696 134 0.1621 0.1897 REMARK 3 7 2.8890 - 2.7444 1.00 2688 133 0.1668 0.1839 REMARK 3 8 2.7444 - 2.6249 1.00 2675 132 0.1662 0.2112 REMARK 3 9 2.6249 - 2.5239 1.00 2657 145 0.1638 0.1714 REMARK 3 10 2.5239 - 2.4368 1.00 2667 157 0.1650 0.1832 REMARK 3 11 2.4368 - 2.3606 1.00 2649 148 0.1564 0.2029 REMARK 3 12 2.3606 - 2.2931 1.00 2663 121 0.1541 0.2025 REMARK 3 13 2.2931 - 2.2327 1.00 2678 128 0.1525 0.1815 REMARK 3 14 2.2327 - 2.1783 1.00 2676 137 0.1531 0.1713 REMARK 3 15 2.1783 - 2.1288 1.00 2634 140 0.1506 0.1938 REMARK 3 16 2.1288 - 2.0834 1.00 2645 148 0.1593 0.1645 REMARK 3 17 2.0834 - 2.0418 1.00 2669 125 0.1664 0.2221 REMARK 3 18 2.0418 - 2.0032 1.00 2632 141 0.1678 0.1922 REMARK 3 19 2.0032 - 1.9675 1.00 2660 150 0.1745 0.2195 REMARK 3 20 1.9675 - 1.9341 1.00 2642 142 0.1801 0.1884 REMARK 3 21 1.9341 - 1.9029 1.00 2626 134 0.1874 0.2336 REMARK 3 22 1.9029 - 1.8736 1.00 2627 163 0.1934 0.2070 REMARK 3 23 1.8736 - 1.8461 1.00 2657 139 0.2014 0.2668 REMARK 3 24 1.8461 - 1.8201 1.00 2632 130 0.2099 0.2667 REMARK 3 25 1.8201 - 1.7955 1.00 2639 135 0.2173 0.2711 REMARK 3 26 1.7955 - 1.7722 1.00 2671 130 0.2291 0.2276 REMARK 3 27 1.7722 - 1.7500 1.00 2654 136 0.2309 0.2570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4206 REMARK 3 ANGLE : 1.182 5698 REMARK 3 CHIRALITY : 0.081 635 REMARK 3 PLANARITY : 0.005 729 REMARK 3 DIHEDRAL : 17.569 1612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 9:325 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1767 -32.2550 -71.4922 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.3159 REMARK 3 T33: 0.2418 T12: -0.0036 REMARK 3 T13: -0.0717 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.6219 L22: 0.5352 REMARK 3 L33: 1.9783 L12: -0.0339 REMARK 3 L13: 0.2906 L23: -0.1088 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: 0.3300 S13: -0.0046 REMARK 3 S21: -0.3252 S22: 0.0381 S23: 0.1348 REMARK 3 S31: 0.0285 S32: -0.1414 S33: -0.1016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 1:173 REMARK 3 ORIGIN FOR THE GROUP (A): 39.2814 -33.9048 -20.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.1149 REMARK 3 T33: 0.2050 T12: -0.0181 REMARK 3 T13: 0.0036 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.3625 L22: 0.2122 REMARK 3 L33: 3.5645 L12: -0.0163 REMARK 3 L13: -0.5512 L23: 0.0889 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0413 S13: 0.0032 REMARK 3 S21: 0.0258 S22: 0.0404 S23: 0.0699 REMARK 3 S31: 0.0149 S32: -0.1593 S33: -0.0787 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75930 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : 0.89000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YP7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8,000, 20% PEG 300, 10% REMARK 280 GLYCEROL, 0.1 M TRIS PH 8.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 50.34350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.06583 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 127.76900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 50.34350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.06583 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 127.76900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 50.34350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.06583 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 127.76900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 50.34350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.06583 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 127.76900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 50.34350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.06583 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 127.76900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 50.34350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.06583 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 127.76900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 58.13167 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 255.53800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 58.13167 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 255.53800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 58.13167 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 255.53800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 58.13167 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 255.53800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 58.13167 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 255.53800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 58.13167 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 255.53800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 44580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 50.34350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -87.19750 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 100.68700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 LYS A 326 REMARK 465 GLN A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 -116.67 51.92 REMARK 500 ASN A 96 38.67 -140.93 REMARK 500 CYS A 97 -156.09 -126.11 REMARK 500 TRP A 127 43.64 -102.37 REMARK 500 SER A 143 -0.55 68.74 REMARK 500 SER A 146 -157.35 -146.09 REMARK 500 ALA A 196 19.68 59.64 REMARK 500 THR A 206 -168.59 -129.09 REMARK 500 ALA B 5 -68.76 -90.58 REMARK 500 PHE B 63 -111.98 -120.96 REMARK 500 GLN B 65 -136.52 -130.50 REMARK 500 GLN B 65 -136.01 -130.81 REMARK 500 ARG B 127 -121.17 52.39 REMARK 500 TYR B 141 36.82 -90.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O58 RELATED DB: PDB REMARK 900 RELATED ID: 4O5I RELATED DB: PDB REMARK 900 RELATED ID: 4O5L RELATED DB: PDB DBREF 4O5N A 11 329 UNP R9U684 R9U684_9INFA 27 345 DBREF 4O5N B 1 176 UNP R9U684 R9U684_9INFA 346 521 SEQADV 4O5N ALA A 7 UNP R9U684 EXPRESSION TAG SEQADV 4O5N ASP A 8 UNP R9U684 EXPRESSION TAG SEQADV 4O5N PRO A 9 UNP R9U684 EXPRESSION TAG SEQADV 4O5N GLY A 10 UNP R9U684 EXPRESSION TAG SEQRES 1 A 323 ALA ASP PRO GLY ALA THR LEU CYS LEU GLY HIS HIS ALA SEQRES 2 A 323 VAL PRO ASN GLY THR ILE VAL LYS THR ILE THR ASN ASP SEQRES 3 A 323 GLN ILE GLU VAL THR ASN ALA THR GLU LEU VAL GLN ASN SEQRES 4 A 323 SER SER ILE GLY GLU ILE CYS ASP SER PRO HIS GLN ILE SEQRES 5 A 323 LEU ASP GLY GLU ASN CYS THR LEU ILE ASP ALA LEU LEU SEQRES 6 A 323 GLY ASP PRO GLN CYS ASP GLY PHE GLN ASN LYS LYS TRP SEQRES 7 A 323 ASP LEU PHE VAL GLU ARG SER LYS ALA TYR SER ASN CYS SEQRES 8 A 323 TYR PRO TYR ASP VAL PRO ASP TYR ALA SER LEU ARG SER SEQRES 9 A 323 LEU VAL ALA SER SER GLY THR LEU GLU PHE ASN ASN GLU SEQRES 10 A 323 SER PHE ASN TRP THR GLY VAL THR GLN ASN GLY THR SER SEQRES 11 A 323 SER ALA CYS ILE ARG ARG SER ASN ASN SER PHE PHE SER SEQRES 12 A 323 ARG LEU ASN TRP LEU THR HIS LEU ASN PHE LYS TYR PRO SEQRES 13 A 323 ALA LEU ASN VAL THR MET PRO ASN ASN GLU GLN PHE ASP SEQRES 14 A 323 LYS LEU TYR ILE TRP GLY VAL HIS HIS PRO GLY THR ASP SEQRES 15 A 323 LYS ASP GLN ILE PHE LEU TYR ALA GLN SER SER GLY ARG SEQRES 16 A 323 ILE THR VAL SER THR LYS ARG SER GLN GLN ALA VAL ILE SEQRES 17 A 323 PRO ASN ILE GLY SER ARG PRO ARG ILE ARG ASN ILE PRO SEQRES 18 A 323 SER ARG ILE SER ILE TYR TRP THR ILE VAL LYS PRO GLY SEQRES 19 A 323 ASP ILE LEU LEU ILE ASN SER THR GLY ASN LEU ILE ALA SEQRES 20 A 323 PRO ARG GLY TYR PHE LYS ILE ARG SER GLY LYS SER SER SEQRES 21 A 323 ILE MET ARG SER ASP ALA PRO ILE GLY LYS CYS ASN SER SEQRES 22 A 323 GLU CYS ILE THR PRO ASN GLY SER ILE PRO ASN ASP LYS SEQRES 23 A 323 PRO PHE GLN ASN VAL ASN ARG ILE THR TYR GLY ALA CYS SEQRES 24 A 323 PRO ARG TYR VAL LYS GLN SER THR LEU LYS LEU ALA THR SEQRES 25 A 323 GLY MET ARG ASN VAL PRO GLU LYS GLN THR ARG SEQRES 1 B 176 GLY ILE PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 176 TRP GLU GLY MET VAL ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 176 GLN ASN SER GLU GLY ARG GLY GLN ALA ALA ASP LEU LYS SEQRES 4 B 176 SER THR GLN ALA ALA ILE ASP GLN ILE ASN GLY LYS LEU SEQRES 5 B 176 ASN ARG LEU ILE GLY LYS THR ASN GLU LYS PHE HIS GLN SEQRES 6 B 176 ILE GLU LYS GLU PHE SER GLU VAL GLU GLY ARG ILE GLN SEQRES 7 B 176 ASP LEU GLU LYS TYR VAL GLU ASP THR LYS ILE ASP LEU SEQRES 8 B 176 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA LEU GLU ASN SEQRES 9 B 176 GLN HIS THR ILE ASP LEU THR ASP SER GLU MET ASN LYS SEQRES 10 B 176 LEU PHE GLU LYS THR LYS LYS GLN LEU ARG GLU ASN ALA SEQRES 11 B 176 GLU ASP MET GLY ASN GLY CYS PHE LYS ILE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN ALA CYS ILE GLY SER ILE ARG ASN GLY THR SEQRES 13 B 176 TYR ASP HIS ASP VAL TYR ARG ASP GLU ALA LEU ASN ASN SEQRES 14 B 176 ARG PHE GLN ILE LYS GLY VAL MODRES 4O5N ASN A 133 ASN GLYCOSYLATION SITE MODRES 4O5N ASN A 63 ASN GLYCOSYLATION SITE MODRES 4O5N ASN A 165 ASN GLYCOSYLATION SITE MODRES 4O5N ASN A 285 ASN GLYCOSYLATION SITE MODRES 4O5N ASN A 22 ASN GLYCOSYLATION SITE MODRES 4O5N ASN A 38 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG A 401 14 HET NAG A 402 14 HET NAG A 408 14 HET NAG A 409 14 HET GOL A 410 6 HET GOL A 411 6 HET PEG B 201 7 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HET GOL B 207 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 9 GOL 8(C3 H8 O3) FORMUL 11 PEG C4 H10 O3 FORMUL 18 HOH *426(H2 O) HELIX 1 1 THR A 65 GLY A 72 1 8 HELIX 2 2 ASP A 73 GLN A 80 5 8 HELIX 3 3 ASP A 104 GLY A 116 1 13 HELIX 4 4 THR A 187 ALA A 196 1 10 HELIX 5 5 ASP B 37 ILE B 56 1 20 HELIX 6 6 GLY B 75 ARG B 127 1 53 HELIX 7 7 ASP B 145 ASN B 154 1 10 HELIX 8 8 ASP B 158 PHE B 171 1 14 SHEET 1 A 5 GLY B 31 ALA B 36 0 SHEET 2 A 5 TYR B 22 ASN B 28 -1 N PHE B 24 O ALA B 35 SHEET 3 A 5 ALA A 11 HIS A 17 -1 N CYS A 14 O ARG B 25 SHEET 4 A 5 CYS B 137 ILE B 140 -1 O ILE B 140 N ALA A 11 SHEET 5 A 5 ALA B 130 ASP B 132 -1 N GLU B 131 O LYS B 139 SHEET 1 B 2 THR A 24 VAL A 26 0 SHEET 2 B 2 ILE A 34 VAL A 36 -1 O VAL A 36 N THR A 24 SHEET 1 C 2 ALA A 39 GLU A 41 0 SHEET 2 C 2 LYS A 315 ALA A 317 -1 O LEU A 316 N THR A 40 SHEET 1 D 3 VAL A 43 GLN A 44 0 SHEET 2 D 3 PHE A 294 GLN A 295 1 O PHE A 294 N GLN A 44 SHEET 3 D 3 ARG A 307 TYR A 308 1 O ARG A 307 N GLN A 295 SHEET 1 E 2 ILE A 51 SER A 54 0 SHEET 2 E 2 ILE A 274 ASN A 278 1 O GLY A 275 N ASP A 53 SHEET 1 F 3 ILE A 58 ASP A 60 0 SHEET 2 F 3 LEU A 86 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 F 3 SER A 266 ARG A 269 1 O MET A 268 N PHE A 87 SHEET 1 G 5 TYR A 100 ASP A 101 0 SHEET 2 G 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 G 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 G 5 GLY A 256 LYS A 259 -1 O PHE A 258 N LEU A 177 SHEET 5 G 5 PHE A 120 ASN A 122 -1 N ASN A 121 O TYR A 257 SHEET 1 H 5 TYR A 100 ASP A 101 0 SHEET 2 H 5 ARG A 229 VAL A 237 1 O ILE A 232 N ASP A 101 SHEET 3 H 5 LYS A 176 HIS A 184 -1 N HIS A 184 O ARG A 229 SHEET 4 H 5 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 5 H 5 LEU A 151 TRP A 153 -1 N ASN A 152 O ALA A 253 SHEET 1 I 2 SER A 136 ARG A 141 0 SHEET 2 I 2 ASN A 144 SER A 146 -1 O ASN A 144 N ARG A 141 SHEET 1 J 4 LEU A 164 PRO A 169 0 SHEET 2 J 4 ILE A 242 SER A 247 -1 O SER A 247 N LEU A 164 SHEET 3 J 4 ILE A 202 SER A 205 -1 N THR A 203 O ASN A 246 SHEET 4 J 4 GLN A 210 VAL A 213 -1 O VAL A 213 N ILE A 202 SHEET 1 K 2 CYS A 281 THR A 283 0 SHEET 2 K 2 GLY A 286 ILE A 288 -1 O ILE A 288 N CYS A 281 SHEET 1 L 2 GLY A 303 CYS A 305 0 SHEET 2 L 2 ASN B 60 LYS B 62 -1 O LYS B 62 N GLY A 303 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.05 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.06 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.07 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.05 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.05 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.11 LINK ND2 ASN A 22 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 38 C1 NAG A 402 1555 1555 1.46 LINK ND2 ASN A 63 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 133 C1 NAG A 409 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 285 C1 NAG A 408 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 CISPEP 1 SER A 54 PRO A 55 0 2.77 CRYST1 100.687 100.687 383.307 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009932 0.005734 0.000000 0.00000 SCALE2 0.000000 0.011468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002609 0.00000