HEADER OXIDOREDUCTASE 20-DEC-13 4O5U TITLE CRYSTAL STRUCTURE OF ALKYLHYDROPEROXIDE REDUCTASE SUBUNIT F FROM E. TITLE 2 COLI AT 2.65 ANG RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT F; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALKYL HYDROPEROXIDE REDUCTASE F52A PROTEIN; COMPND 5 EC: 1.8.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.KAMARIAH,P.V.DIP,M.S.S.MANIMEKALAI,G.GRUBER,F.EISENHABER, AUTHOR 2 B.EISENHABER REVDAT 3 25-FEB-15 4O5U 1 JRNL REVDAT 2 12-NOV-14 4O5U 1 JRNL REVDAT 1 05-NOV-14 4O5U 0 JRNL AUTH P.V.DIP,N.KAMARIAH,M.S.SUBRAMANIAN MANIMEKALAI,W.NARTEY, JRNL AUTH 2 A.M.BALAKRISHNA,F.EISENHABER,B.EISENHABER,G.GRUBER JRNL TITL STRUCTURE, MECHANISM AND ENSEMBLE FORMATION OF THE JRNL TITL 2 ALKYLHYDROPEROXIDE REDUCTASE SUBUNITS AHPC AND AHPF FROM JRNL TITL 3 ESCHERICHIA COLI JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2848 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25372677 JRNL DOI 10.1107/S1399004714019233 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.BIEGER,L.O.ESSEN REMARK 1 TITL CRYSTAL STRUCTURE OF THE CATALYTIC CORE COMPONENT OF THE REMARK 1 TITL 2 ALKYLHYDROPEROXIDE REDUCTASE AHPF FROM ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 307 1 2010 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.A.WOOD,L.B.POOLE,P.A.KARPLUS REMARK 1 TITL STRUCTURE OF INTACT AHPF REVEALS A MIRRORED THIOREDOXIN-LIKE REMARK 1 TITL 2 ACTIVE SITE AND IMPLIES LARGE DOMAIN ROTATIONS DURING REMARK 1 TITL 3 CATALYSIS REMARK 1 REF BIOCHEMISTRY V. 40 3900 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8205 - 5.2850 0.99 2544 149 0.1739 0.2359 REMARK 3 2 5.2850 - 4.1990 1.00 2502 137 0.1413 0.1711 REMARK 3 3 4.1990 - 3.6694 1.00 2510 107 0.1528 0.2037 REMARK 3 4 3.6694 - 3.3345 1.00 2463 114 0.1669 0.2012 REMARK 3 5 3.3345 - 3.0958 1.00 2492 140 0.1728 0.2178 REMARK 3 6 3.0958 - 2.9134 1.00 2433 153 0.2031 0.2787 REMARK 3 7 2.9134 - 2.7676 0.99 2455 132 0.2141 0.2568 REMARK 3 8 2.7676 - 2.6472 0.90 2220 123 0.2396 0.2912 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4102 REMARK 3 ANGLE : 0.908 5562 REMARK 3 CHIRALITY : 0.048 637 REMARK 3 PLANARITY : 0.004 710 REMARK 3 DIHEDRAL : 15.893 1504 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 1 through 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8877 65.2618 -15.7287 REMARK 3 T TENSOR REMARK 3 T11: 0.6511 T22: 0.7329 REMARK 3 T33: 0.3722 T12: 0.0774 REMARK 3 T13: 0.0515 T23: 0.1562 REMARK 3 L TENSOR REMARK 3 L11: 0.0153 L22: 0.0047 REMARK 3 L33: 0.0869 L12: 0.0102 REMARK 3 L13: -0.0116 L23: 0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.3513 S12: -0.1080 S13: 0.0067 REMARK 3 S21: 0.0836 S22: -0.1376 S23: -0.1961 REMARK 3 S31: 0.1160 S32: 0.1460 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 20 through 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9962 69.4531 -9.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.5439 T22: 0.4736 REMARK 3 T33: 0.2363 T12: -0.0264 REMARK 3 T13: 0.0698 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.4690 L22: 0.0074 REMARK 3 L33: 0.6944 L12: -0.0632 REMARK 3 L13: -0.3643 L23: 0.1134 REMARK 3 S TENSOR REMARK 3 S11: -0.0212 S12: -0.0576 S13: -0.0754 REMARK 3 S21: 0.1516 S22: 0.0469 S23: 0.1389 REMARK 3 S31: 0.1218 S32: -0.1621 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 161 through 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5031 84.3159 -2.1695 REMARK 3 T TENSOR REMARK 3 T11: 0.8051 T22: 0.6616 REMARK 3 T33: 0.4127 T12: -0.0152 REMARK 3 T13: 0.1454 T23: -0.0990 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: 0.0211 REMARK 3 L33: 0.0158 L12: 0.0131 REMARK 3 L13: 0.0076 L23: -0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.1567 S13: -0.0924 REMARK 3 S21: 0.4061 S22: -0.0361 S23: 0.3329 REMARK 3 S31: -0.1390 S32: -0.0027 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 187 through 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4694 68.6411 15.7927 REMARK 3 T TENSOR REMARK 3 T11: 1.1426 T22: 0.7362 REMARK 3 T33: 0.3915 T12: -0.0633 REMARK 3 T13: 0.1642 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.1411 L22: 0.2392 REMARK 3 L33: 0.1134 L12: -0.0652 REMARK 3 L13: 0.0194 L23: -0.1485 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.1539 S13: -0.2300 REMARK 3 S21: 0.1688 S22: 0.0499 S23: 0.6057 REMARK 3 S31: -0.0930 S32: -0.0853 S33: 0.0035 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 207 through 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1983 62.6158 45.0913 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1094 REMARK 3 T33: 0.2056 T12: 0.0038 REMARK 3 T13: -0.0418 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 0.3901 L22: 0.6555 REMARK 3 L33: 0.1389 L12: 0.2336 REMARK 3 L13: 0.1653 L23: -0.1473 REMARK 3 S TENSOR REMARK 3 S11: -0.0048 S12: 0.2506 S13: 0.3646 REMARK 3 S21: -0.0417 S22: 0.0934 S23: -0.0397 REMARK 3 S31: -0.0657 S32: -0.1516 S33: 0.0515 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 281 through 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7567 50.7097 34.4207 REMARK 3 T TENSOR REMARK 3 T11: 0.1611 T22: 0.2268 REMARK 3 T33: 0.0964 T12: -0.0157 REMARK 3 T13: -0.0257 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.2076 L22: 0.2842 REMARK 3 L33: 0.3197 L12: -0.0446 REMARK 3 L13: -0.1353 L23: 0.0195 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.3550 S13: 0.0951 REMARK 3 S21: -0.2338 S22: -0.0203 S23: 0.2523 REMARK 3 S31: -0.0705 S32: 0.0186 S33: -0.0063 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 326 through 437 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5259 54.9354 66.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.1216 T22: 0.1404 REMARK 3 T33: 0.2165 T12: -0.0061 REMARK 3 T13: 0.0097 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.4695 L22: 1.0581 REMARK 3 L33: 0.6636 L12: 0.0107 REMARK 3 L13: -0.0636 L23: -0.1295 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: -0.0428 S13: 0.0187 REMARK 3 S21: 0.0527 S22: -0.0638 S23: -0.0614 REMARK 3 S31: 0.0203 S32: -0.0688 S33: -0.0014 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 438 through 514 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7153 48.5396 51.5162 REMARK 3 T TENSOR REMARK 3 T11: 0.0785 T22: 0.0594 REMARK 3 T33: 0.1553 T12: -0.0019 REMARK 3 T13: -0.0168 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.3153 L22: 0.1348 REMARK 3 L33: 0.3539 L12: -0.0040 REMARK 3 L13: 0.0700 L23: 0.1366 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.0387 S13: -0.1191 REMARK 3 S21: 0.0148 S22: 0.0379 S23: 0.0094 REMARK 3 S31: 0.0211 S32: 0.0543 S33: -0.1094 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resid 515 through 521 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4301 44.4758 36.2343 REMARK 3 T TENSOR REMARK 3 T11: 0.1860 T22: 0.3902 REMARK 3 T33: 0.3567 T12: -0.0670 REMARK 3 T13: 0.0570 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.0114 L22: 0.0029 REMARK 3 L33: 0.0057 L12: -0.0071 REMARK 3 L13: -0.0105 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0927 S12: -0.0438 S13: -0.1606 REMARK 3 S21: -0.0329 S22: 0.0975 S23: -0.0562 REMARK 3 S31: -0.0997 S32: -0.0266 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4O5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-13. REMARK 100 THE RCSB ID CODE IS RCSB084079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 1.55072, 1.58994, 1.59048 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 2 M AMMONIUM REMARK 280 SULFATE, 10 MM CADMIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.34900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.79900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.34900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.79900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -248.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.01058 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 113.29855 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -161.08 -107.99 REMARK 500 ASP A 116 -71.46 -71.44 REMARK 500 PHE A 159 65.79 -102.14 REMARK 500 ASP A 165 -74.65 -79.12 REMARK 500 ASN A 177 40.34 39.90 REMARK 500 THR A 197 76.21 -115.74 REMARK 500 ALA A 199 -80.70 -131.07 REMARK 500 ARG A 244 96.70 -162.03 REMARK 500 VAL A 253 -93.20 -110.01 REMARK 500 SER A 260 0.47 82.99 REMARK 500 LYS A 340 31.10 -145.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 610 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FL2 RELATED DB: PDB REMARK 900 RELATED ID: 4O5R RELATED DB: PDB REMARK 900 RELATED ID: 4O5Q RELATED DB: PDB DBREF 4O5U A 1 521 UNP P35340 AHPF_ECOLI 1 521 SEQRES 1 A 521 MET LEU ASP THR ASN MET LYS THR GLN LEU LYS ALA TYR SEQRES 2 A 521 LEU GLU LYS LEU THR LYS PRO VAL GLU LEU ILE ALA THR SEQRES 3 A 521 LEU ASP ASP SER ALA LYS SER ALA GLU ILE LYS GLU LEU SEQRES 4 A 521 LEU ALA GLU ILE ALA GLU LEU SER ASP LYS VAL THR PHE SEQRES 5 A 521 LYS GLU ASP ASN SER LEU PRO VAL ARG LYS PRO SER PHE SEQRES 6 A 521 LEU ILE THR ASN PRO GLY SER ASN GLN GLY PRO ARG PHE SEQRES 7 A 521 ALA GLY SER PRO LEU GLY HIS GLU PHE THR SER LEU VAL SEQRES 8 A 521 LEU ALA LEU LEU TRP THR GLY GLY HIS PRO SER LYS GLU SEQRES 9 A 521 ALA GLN SER LEU LEU GLU GLN ILE ARG HIS ILE ASP GLY SEQRES 10 A 521 ASP PHE GLU PHE GLU THR TYR TYR SER LEU SER CYS HIS SEQRES 11 A 521 ASN CYS PRO ASP VAL VAL GLN ALA LEU ASN LEU MET SER SEQRES 12 A 521 VAL LEU ASN PRO ARG ILE LYS HIS THR ALA ILE ASP GLY SEQRES 13 A 521 GLY THR PHE GLN ASN GLU ILE THR ASP ARG ASN VAL MET SEQRES 14 A 521 GLY VAL PRO ALA VAL PHE VAL ASN GLY LYS GLU PHE GLY SEQRES 15 A 521 GLN GLY ARG MET THR LEU THR GLU ILE VAL ALA LYS ILE SEQRES 16 A 521 ASP THR GLY ALA GLU LYS ARG ALA ALA GLU GLU LEU ASN SEQRES 17 A 521 LYS ARG ASP ALA TYR ASP VAL LEU ILE VAL GLY SER GLY SEQRES 18 A 521 PRO ALA GLY ALA ALA ALA ALA ILE TYR SER ALA ARG LYS SEQRES 19 A 521 GLY ILE ARG THR GLY LEU MET GLY GLU ARG PHE GLY GLY SEQRES 20 A 521 GLN ILE LEU ASP THR VAL ASP ILE GLU ASN TYR ILE SER SEQRES 21 A 521 VAL PRO LYS THR GLU GLY GLN LYS LEU ALA GLY ALA LEU SEQRES 22 A 521 LYS VAL HIS VAL ASP GLU TYR ASP VAL ASP VAL ILE ASP SEQRES 23 A 521 SER GLN SER ALA SER LYS LEU ILE PRO ALA ALA VAL GLU SEQRES 24 A 521 GLY GLY LEU HIS GLN ILE GLU THR ALA SER GLY ALA VAL SEQRES 25 A 521 LEU LYS ALA ARG SER ILE ILE VAL ALA THR GLY ALA LYS SEQRES 26 A 521 TRP ARG ASN MET ASN VAL PRO GLY GLU ASP GLN TYR ARG SEQRES 27 A 521 THR LYS GLY VAL THR TYR CYS PRO HIS CYS ASP GLY PRO SEQRES 28 A 521 LEU PHE LYS GLY LYS ARG VAL ALA VAL ILE GLY GLY GLY SEQRES 29 A 521 ASN SER GLY VAL GLU ALA ALA ILE ASP LEU ALA GLY ILE SEQRES 30 A 521 VAL GLU HIS VAL THR LEU LEU GLU PHE ALA PRO GLU MET SEQRES 31 A 521 LYS ALA ASP GLN VAL LEU GLN ASP LYS LEU ARG SER LEU SEQRES 32 A 521 LYS ASN VAL ASP ILE ILE LEU ASN ALA GLN THR THR GLU SEQRES 33 A 521 VAL LYS GLY ASP GLY SER LYS VAL VAL GLY LEU GLU TYR SEQRES 34 A 521 ARG ASP ARG VAL SER GLY ASP ILE HIS ASN ILE GLU LEU SEQRES 35 A 521 ALA GLY ILE PHE VAL GLN ILE GLY LEU LEU PRO ASN THR SEQRES 36 A 521 ASN TRP LEU GLU GLY ALA VAL GLU ARG ASN ARG MET GLY SEQRES 37 A 521 GLU ILE ILE ILE ASP ALA LYS CYS GLU THR ASN VAL LYS SEQRES 38 A 521 GLY VAL PHE ALA ALA GLY ASP CYS THR THR VAL PRO TYR SEQRES 39 A 521 LYS GLN ILE ILE ILE ALA THR GLY GLU GLY ALA LYS ALA SEQRES 40 A 521 SER LEU SER ALA PHE ASP TYR LEU ILE ARG THR LYS THR SEQRES 41 A 521 ALA HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET FAD A 604 53 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET CD A 610 1 HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CD CADMIUM ION FORMUL 2 SO4 8(O4 S 2-) FORMUL 5 FAD C27 H33 N9 O15 P2 FORMUL 11 CD CD 2+ FORMUL 12 HOH *162(H2 O) HELIX 1 1 ASP A 3 LEU A 14 1 12 HELIX 2 2 GLU A 15 LEU A 17 5 3 HELIX 3 3 SER A 30 LEU A 46 1 17 HELIX 4 4 LEU A 83 HIS A 85 5 3 HELIX 5 5 GLU A 86 GLY A 98 1 13 HELIX 6 6 ALA A 105 HIS A 114 1 10 HELIX 7 7 ASN A 131 ASN A 146 1 16 HELIX 8 8 PHE A 159 ARG A 166 1 8 HELIX 9 9 THR A 187 ASP A 196 1 10 HELIX 10 10 ARG A 202 LYS A 209 1 8 HELIX 11 11 GLY A 221 ARG A 233 1 13 HELIX 12 12 GLY A 246 THR A 252 5 7 HELIX 13 13 GLY A 266 GLU A 279 1 14 HELIX 14 14 GLU A 334 ARG A 338 5 5 HELIX 15 15 CYS A 345 GLY A 350 1 6 HELIX 16 16 PRO A 351 LYS A 354 5 4 HELIX 17 17 GLY A 364 ALA A 375 1 12 HELIX 18 18 ASP A 393 SER A 402 1 10 HELIX 19 19 THR A 455 GLU A 459 5 5 HELIX 20 20 GLN A 496 THR A 520 1 25 SHEET 1 A 8 VAL A 50 GLU A 54 0 SHEET 2 A 8 VAL A 21 THR A 26 1 N LEU A 23 O THR A 51 SHEET 3 A 8 SER A 64 THR A 68 -1 O THR A 68 N GLU A 22 SHEET 4 A 8 ARG A 77 ALA A 79 -1 O PHE A 78 N PHE A 65 SHEET 5 A 8 ILE A 149 ASP A 155 1 O ASP A 155 N ALA A 79 SHEET 6 A 8 PHE A 119 TYR A 125 1 N PHE A 121 O LYS A 150 SHEET 7 A 8 ALA A 173 VAL A 176 -1 O ALA A 173 N TYR A 124 SHEET 8 A 8 LYS A 179 GLN A 183 -1 O LYS A 179 N VAL A 176 SHEET 1 B 6 VAL A 282 ILE A 285 0 SHEET 2 B 6 THR A 238 MET A 241 1 N LEU A 240 O ILE A 285 SHEET 3 B 6 TYR A 213 VAL A 218 1 N ILE A 217 O GLY A 239 SHEET 4 B 6 VAL A 312 VAL A 320 1 O ILE A 319 N VAL A 218 SHEET 5 B 6 HIS A 303 THR A 307 -1 N ILE A 305 O LEU A 313 SHEET 6 B 6 ALA A 290 ILE A 294 -1 N SER A 291 O GLU A 306 SHEET 1 C 5 VAL A 282 ILE A 285 0 SHEET 2 C 5 THR A 238 MET A 241 1 N LEU A 240 O ILE A 285 SHEET 3 C 5 TYR A 213 VAL A 218 1 N ILE A 217 O GLY A 239 SHEET 4 C 5 VAL A 312 VAL A 320 1 O ILE A 319 N VAL A 218 SHEET 5 C 5 VAL A 483 ALA A 485 1 O PHE A 484 N VAL A 320 SHEET 1 D 2 ASP A 254 ILE A 255 0 SHEET 2 D 2 THR A 264 GLU A 265 -1 O THR A 264 N ILE A 255 SHEET 1 E 2 ALA A 324 TRP A 326 0 SHEET 2 E 2 LEU A 451 PRO A 453 -1 O LEU A 452 N LYS A 325 SHEET 1 F 5 VAL A 342 THR A 343 0 SHEET 2 F 5 GLY A 444 VAL A 447 1 O VAL A 447 N THR A 343 SHEET 3 F 5 ARG A 357 ILE A 361 1 N ALA A 359 O PHE A 446 SHEET 4 F 5 HIS A 380 LEU A 384 1 O THR A 382 N VAL A 360 SHEET 5 F 5 VAL A 406 ILE A 409 1 O ILE A 409 N LEU A 383 SHEET 1 G 3 ALA A 412 GLY A 419 0 SHEET 2 G 3 VAL A 424 ASP A 431 -1 O ARG A 430 N GLN A 413 SHEET 3 G 3 ILE A 437 GLU A 441 -1 O ILE A 440 N LEU A 427 SSBOND 1 CYS A 129 CYS A 132 1555 1555 2.04 SSBOND 2 CYS A 345 CYS A 348 1555 1555 2.04 CISPEP 1 LYS A 62 PRO A 63 0 -1.62 CISPEP 2 VAL A 171 PRO A 172 0 0.69 SITE 1 AC1 6 PRO A 453 ASN A 454 THR A 455 ASN A 456 SITE 2 AC1 6 TRP A 457 HOH A 767 SITE 1 AC2 4 GLY A 333 GLU A 334 ASP A 335 GLN A 336 SITE 1 AC3 2 ASP A 473 ALA A 474 SITE 1 AC4 36 GLY A 219 GLY A 221 PRO A 222 ALA A 223 SITE 2 AC4 36 TYR A 230 GLY A 242 GLU A 243 ARG A 244 SITE 3 AC4 36 GLY A 247 GLN A 248 THR A 252 ASN A 257 SITE 4 AC4 36 GLN A 288 SER A 289 ALA A 290 ALA A 321 SITE 5 AC4 36 THR A 322 GLY A 323 ALA A 324 TRP A 326 SITE 6 AC4 36 CYS A 348 TRP A 457 GLY A 487 ASP A 488 SITE 7 AC4 36 LYS A 495 GLN A 496 ILE A 497 ALA A 500 SITE 8 AC4 36 HOH A 706 HOH A 717 HOH A 727 HOH A 728 SITE 9 AC4 36 HOH A 792 HOH A 794 HOH A 814 HOH A 815 SITE 1 AC5 2 HIS A 438 ASN A 439 SITE 1 AC6 5 GLY A 364 ASN A 365 SER A 366 HOH A 751 SITE 2 AC6 5 HOH A 795 SITE 1 AC7 3 ARG A 357 HIS A 380 HOH A 777 SITE 1 AC8 3 ASP A 393 GLN A 394 HOH A 718 SITE 1 AC9 6 TRP A 326 TYR A 344 VAL A 447 GLN A 448 SITE 2 AC9 6 GLY A 450 LEU A 451 SITE 1 BC1 2 HIS A 85 HIS A 130 CRYST1 106.698 59.598 123.715 90.00 113.68 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009372 0.000000 0.004110 0.00000 SCALE2 0.000000 0.016779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008826 0.00000