data_4O5W # _entry.id 4O5W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4O5W pdb_00004o5w 10.2210/pdb4o5w/pdb NDB NA2869 ? ? RCSB RCSB084081 ? ? WWPDB D_1000084081 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-02 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_database_2.pdbx_DOI' 3 3 'Structure model' '_database_2.pdbx_database_accession' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.value' 25 3 'Structure model' '_struct_conn.pdbx_dist_value' 26 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 4O5W _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-12-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4IJ0 . unspecified PDB 4ITD . unspecified PDB 4O5X . unspecified PDB 4O5Y . unspecified PDB 4O5Z . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, F.' 1 'Tsunoda, M.' 2 'Suzuki, K.' 3 'Kikuchi, Y.' 4 'Wilkinson, O.' 5 'Millington, C.L.' 6 'Margison, G.P.' 7 'Williams, D.M.' 8 'Takenaka, A.' 9 # _citation.id primary _citation.title 'O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 70 _citation.page_first 1669 _citation.page_last 1679 _citation.year 2014 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24914978 _citation.pdbx_database_id_DOI 10.1107/S1399004714006178 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, F.' 1 ? primary 'Tsunoda, M.' 2 ? primary 'Kikuchi, Y.' 3 ? primary 'Wilkinson, O.' 4 ? primary 'Millington, C.L.' 5 ? primary 'Margison, G.P.' 6 ? primary 'Williams, D.M.' 7 ? primary 'Takenaka, A.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3') ; 3736.439 2 ? ? ? 'damaged DNA' 2 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn 'STRONTIUM ION' 87.620 1 ? ? ? ? 5 water nat water 18.015 109 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(C6G)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCXAATTTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT 3 'MAGNESIUM ION' MG 4 'STRONTIUM ION' SR 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 C6G n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight C6G 'DNA linking' n '6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine' ? 'C12 H16 N5 O9 P' 405.257 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 HT non-polymer . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O' 424.498 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SR non-polymer . 'STRONTIUM ION' ? 'Sr 2' 87.620 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 C6G 4 4 4 C6G C6G A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DT 9 9 9 DT DT A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 C6G 4 16 16 C6G C6G B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DT 9 21 21 DT DT B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HT 1 101 59 HT HT A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 1 MG MG A . F 4 SR 1 101 1 SR SR B . G 5 HOH 1 201 3 HOH HOH A . G 5 HOH 2 202 4 HOH HOH A . G 5 HOH 3 203 7 HOH HOH A . G 5 HOH 4 204 9 HOH HOH A . G 5 HOH 5 205 14 HOH HOH A . G 5 HOH 6 206 17 HOH HOH A . G 5 HOH 7 207 18 HOH HOH A . G 5 HOH 8 208 24 HOH HOH A . G 5 HOH 9 209 29 HOH HOH A . G 5 HOH 10 210 33 HOH HOH A . G 5 HOH 11 211 45 HOH HOH A . G 5 HOH 12 212 90 HOH HOH A . G 5 HOH 13 213 96 HOH HOH A . G 5 HOH 14 214 97 HOH HOH A . G 5 HOH 15 215 107 HOH HOH A . G 5 HOH 16 216 125 HOH HOH A . G 5 HOH 17 217 129 HOH HOH A . G 5 HOH 18 218 137 HOH HOH A . G 5 HOH 19 219 141 HOH HOH A . G 5 HOH 20 220 143 HOH HOH A . G 5 HOH 21 221 149 HOH HOH A . G 5 HOH 22 222 177 HOH HOH A . G 5 HOH 23 223 223 HOH HOH A . G 5 HOH 24 224 253 HOH HOH A . G 5 HOH 25 225 254 HOH HOH A . G 5 HOH 26 226 255 HOH HOH A . G 5 HOH 27 227 260 HOH HOH A . G 5 HOH 28 228 264 HOH HOH A . G 5 HOH 29 229 275 HOH HOH A . G 5 HOH 30 230 277 HOH HOH A . G 5 HOH 31 231 289 HOH HOH A . G 5 HOH 32 232 294 HOH HOH A . G 5 HOH 33 233 299 HOH HOH A . G 5 HOH 34 234 304 HOH HOH A . G 5 HOH 35 235 306 HOH HOH A . G 5 HOH 36 236 311 HOH HOH A . G 5 HOH 37 237 312 HOH HOH A . G 5 HOH 38 238 325 HOH HOH A . G 5 HOH 39 239 326 HOH HOH A . G 5 HOH 40 240 330 HOH HOH A . G 5 HOH 41 241 331 HOH HOH A . G 5 HOH 42 242 335 HOH HOH A . G 5 HOH 43 243 336 HOH HOH A . G 5 HOH 44 244 338 HOH HOH A . G 5 HOH 45 245 339 HOH HOH A . G 5 HOH 46 246 78 HOH HOH A . G 5 HOH 47 247 118 HOH HOH A . G 5 HOH 48 248 301 HOH HOH A . H 5 HOH 1 201 2 HOH HOH B . H 5 HOH 2 202 5 HOH HOH B . H 5 HOH 3 203 10 HOH HOH B . H 5 HOH 4 204 11 HOH HOH B . H 5 HOH 5 205 13 HOH HOH B . H 5 HOH 6 206 15 HOH HOH B . H 5 HOH 7 207 16 HOH HOH B . H 5 HOH 8 208 19 HOH HOH B . H 5 HOH 9 209 21 HOH HOH B . H 5 HOH 10 210 22 HOH HOH B . H 5 HOH 11 211 32 HOH HOH B . H 5 HOH 12 212 34 HOH HOH B . H 5 HOH 13 213 37 HOH HOH B . H 5 HOH 14 214 38 HOH HOH B . H 5 HOH 15 215 40 HOH HOH B . H 5 HOH 16 216 52 HOH HOH B . H 5 HOH 17 217 72 HOH HOH B . H 5 HOH 18 218 74 HOH HOH B . H 5 HOH 19 219 81 HOH HOH B . H 5 HOH 20 220 83 HOH HOH B . H 5 HOH 21 221 93 HOH HOH B . H 5 HOH 22 222 94 HOH HOH B . H 5 HOH 23 223 99 HOH HOH B . H 5 HOH 24 224 103 HOH HOH B . H 5 HOH 25 225 128 HOH HOH B . H 5 HOH 26 226 140 HOH HOH B . H 5 HOH 27 227 142 HOH HOH B . H 5 HOH 28 228 145 HOH HOH B . H 5 HOH 29 229 148 HOH HOH B . H 5 HOH 30 230 156 HOH HOH B . H 5 HOH 31 231 192 HOH HOH B . H 5 HOH 32 232 193 HOH HOH B . H 5 HOH 33 233 196 HOH HOH B . H 5 HOH 34 234 197 HOH HOH B . H 5 HOH 35 235 230 HOH HOH B . H 5 HOH 36 236 274 HOH HOH B . H 5 HOH 37 237 276 HOH HOH B . H 5 HOH 38 238 278 HOH HOH B . H 5 HOH 39 239 279 HOH HOH B . H 5 HOH 40 240 280 HOH HOH B . H 5 HOH 41 241 288 HOH HOH B . H 5 HOH 42 242 290 HOH HOH B . H 5 HOH 43 243 297 HOH HOH B . H 5 HOH 44 244 298 HOH HOH B . H 5 HOH 45 245 302 HOH HOH B . H 5 HOH 46 246 307 HOH HOH B . H 5 HOH 47 247 314 HOH HOH B . H 5 HOH 48 248 315 HOH HOH B . H 5 HOH 49 249 316 HOH HOH B . H 5 HOH 50 250 317 HOH HOH B . H 5 HOH 51 251 318 HOH HOH B . H 5 HOH 52 252 319 HOH HOH B . H 5 HOH 53 253 320 HOH HOH B . H 5 HOH 54 254 323 HOH HOH B . H 5 HOH 55 255 327 HOH HOH B . H 5 HOH 56 256 328 HOH HOH B . H 5 HOH 57 257 329 HOH HOH B . H 5 HOH 58 258 332 HOH HOH B . H 5 HOH 59 259 333 HOH HOH B . H 5 HOH 60 260 334 HOH HOH B . H 5 HOH 61 261 340 HOH HOH B . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 DENZO . ? ? ? ? 'data reduction' ? ? ? # _cell.entry_id 4O5W _cell.length_a 25.863 _cell.length_b 40.293 _cell.length_c 65.266 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O5W _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4O5W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 45.94 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;5%(v/v)MPD, 6mM spermine 4HCL, 20mM LiCL, 10mM MgCL2, 40mM SrCL2, 20mM Na cacodylate(pH7.0), 0.5mM Hoechst 33258, 0.1%(w/w)CHAPS, 0.5mM DNA, vapor diffusion, hanging drop, temperature 277K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2011-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4O5W _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 1.600 _reflns.number_obs 9491 _reflns.number_all ? _reflns.percent_possible_obs 99.500 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.300 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.700 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared 1 1 1.600 1.630 99.800 0.249 ? ? 7.000 ? ? ? ? ? ? 1 2 1.630 1.660 99.100 0.192 ? ? 7.100 ? ? ? ? ? ? 1 3 1.660 1.690 98.900 0.175 ? ? 7.000 ? ? ? ? ? ? 1 4 1.690 1.720 99.600 0.158 ? ? 7.000 ? ? ? ? ? ? 1 5 1.720 1.760 99.300 0.125 ? ? 7.000 ? ? ? ? ? ? 1 6 1.760 1.800 99.800 0.107 ? ? 7.100 ? ? ? ? ? ? 1 7 1.800 1.850 99.200 0.111 ? ? 7.000 ? ? ? ? ? ? 1 8 1.850 1.900 99.600 0.094 ? ? 7.000 ? ? ? ? ? ? 1 9 1.900 1.950 99.800 0.086 ? ? 7.000 ? ? ? ? ? ? 1 10 1.950 2.020 99.800 0.115 ? ? 8.500 ? ? ? ? ? ? 1 11 2.020 2.090 100.000 0.171 ? ? 14.100 ? ? ? ? ? ? 1 12 2.090 2.170 100.000 0.131 ? ? 13.800 ? ? ? ? ? ? 1 13 2.170 2.270 100.000 0.107 ? ? 14.000 ? ? ? ? ? ? 1 14 2.270 2.390 100.000 0.088 ? ? 13.800 ? ? ? ? ? ? 1 15 2.390 2.540 100.000 0.073 ? ? 13.900 ? ? ? ? ? ? 1 16 2.540 2.740 100.000 0.059 ? ? 13.600 ? ? ? ? ? ? 1 17 2.740 3.010 100.000 0.050 ? ? 13.100 ? ? ? ? ? ? 1 18 3.010 3.450 99.400 0.031 ? ? 10.700 ? ? ? ? ? ? 1 19 3.450 4.340 99.200 0.027 ? ? 8.200 ? ? ? ? ? ? 1 20 4.340 50.000 96.200 0.027 ? ? 6.500 ? ? ? ? ? ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4O5W _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 8977 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.29 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.06 _refine.ls_R_factor_obs 0.22611 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22480 _refine.ls_R_factor_R_free 0.25530 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 448 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.400 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.962 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 30.781 _refine.aniso_B[1][1] 1.95 _refine.aniso_B[2][2] -0.50 _refine.aniso_B[3][3] -1.45 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.116 _refine.pdbx_overall_ESU_R_Free 0.111 _refine.overall_SU_ML 0.079 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.283 _refine.overall_SU_R_Cruickshank_DPI 0.1114 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 496 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 109 _refine_hist.number_atoms_total 640 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 34.29 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.030 0.021 ? 589 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.115 3.000 ? 888 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.392 0.200 ? 96 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.029 0.020 ? 290 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.019 3.000 ? 589 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.257 4.500 ? 888 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.598 _refine_ls_shell.d_res_low 1.640 _refine_ls_shell.number_reflns_R_work 611 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs 97.01 _refine_ls_shell.R_factor_R_free 0.224 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 4O5W _struct.title 'O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O5W _struct_keywords.text 'damaged DNA, O6-carboxymethylguanine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4O5W _struct_ref.pdbx_db_accession 4O5W _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4O5W A 1 ? 12 ? 4O5W 1 ? 12 ? 1 12 2 1 4O5W B 1 ? 12 ? 4O5W 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1200 ? 1 MORE -7 ? 1 'SSA (A^2)' 4600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A C6G 4 P ? ? A DC 3 A C6G 4 1_555 ? ? ? ? ? ? ? 1.648 ? ? covale2 covale one ? A C6G 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A C6G 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.734 ? ? covale3 covale both ? B DC 3 "O3'" ? ? ? 1_555 B C6G 4 P ? ? B DC 15 B C6G 16 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale one ? B C6G 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B C6G 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.620 ? ? metalc1 metalc ? ? A DT 9 O4 ? ? ? 1_555 D MG . MG ? ? A DT 9 A MG 102 1_555 ? ? ? ? ? ? ? 2.655 ? ? metalc2 metalc ? ? D MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 102 A HOH 225 1_555 ? ? ? ? ? ? ? 2.661 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 B HOH 257 1_555 ? ? ? ? ? ? ? 2.318 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 209 1_555 ? ? ? ? ? ? ? 2.187 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 221 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 247 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 248 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 B HOH 222 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 B HOH 223 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc10 metalc ? ? G HOH . O ? ? ? 1_555 F SR . SR ? ? A HOH 207 B SR 101 1_555 ? ? ? ? ? ? ? 2.806 ? ? metalc11 metalc ? ? G HOH . O ? ? ? 1_555 F SR . SR ? ? A HOH 248 B SR 101 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc12 metalc ? ? B DT 9 O4 ? ? ? 1_555 F SR . SR ? ? B DT 21 B SR 101 1_555 ? ? ? ? ? ? ? 2.627 ? ? metalc13 metalc ? ? F SR . SR ? ? ? 1_555 H HOH . O ? ? B SR 101 B HOH 218 1_555 ? ? ? ? ? ? ? 2.484 ? ? metalc14 metalc ? ? F SR . SR ? ? ? 1_555 H HOH . O ? ? B SR 101 B HOH 223 1_555 ? ? ? ? ? ? ? 2.555 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A DT 9 ? A DT 9 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? G HOH . ? A HOH 225 ? 1_555 68.9 ? 2 O4 ? A DT 9 ? A DT 9 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 70.1 ? 3 O ? G HOH . ? A HOH 225 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? B HOH 257 ? 1_555 72.3 ? 4 O ? G HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 221 ? 1_555 85.1 ? 5 O ? G HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 247 ? 1_555 85.6 ? 6 O ? G HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 247 ? 1_555 91.9 ? 7 O ? G HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 168.1 ? 8 O ? G HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 88.8 ? 9 O ? G HOH . ? A HOH 247 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 84.4 ? 10 O ? G HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 222 ? 1_555 96.0 ? 11 O ? G HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 222 ? 1_555 176.2 ? 12 O ? G HOH . ? A HOH 247 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 222 ? 1_555 84.5 ? 13 O ? G HOH . ? A HOH 248 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 222 ? 1_555 89.5 ? 14 O ? G HOH . ? A HOH 209 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 96.0 ? 15 O ? G HOH . ? A HOH 221 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 90.5 ? 16 O ? G HOH . ? A HOH 247 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 177.1 ? 17 O ? G HOH . ? A HOH 248 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 94.3 ? 18 O ? H HOH . ? B HOH 222 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 93.0 ? 19 O ? G HOH . ? A HOH 207 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? G HOH . ? A HOH 248 ? 1_555 104.6 ? 20 O ? G HOH . ? A HOH 207 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O4 ? B DT 9 ? B DT 21 ? 1_555 73.7 ? 21 O ? G HOH . ? A HOH 248 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O4 ? B DT 9 ? B DT 21 ? 1_555 153.7 ? 22 O ? G HOH . ? A HOH 207 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 218 ? 1_555 76.7 ? 23 O ? G HOH . ? A HOH 248 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 218 ? 1_555 131.4 ? 24 O4 ? B DT 9 ? B DT 21 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 218 ? 1_555 74.4 ? 25 O ? G HOH . ? A HOH 207 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 70.4 ? 26 O ? G HOH . ? A HOH 248 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 83.5 ? 27 O4 ? B DT 9 ? B DT 21 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 71.1 ? 28 O ? H HOH . ? B HOH 218 ? 1_555 SR ? F SR . ? B SR 101 ? 1_555 O ? H HOH . ? B HOH 223 ? 1_555 137.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HT 101 ? 14 'BINDING SITE FOR RESIDUE HT A 101' AC2 Software A MG 102 ? 3 'BINDING SITE FOR RESIDUE MG A 102' AC3 Software A MG 103 ? 7 'BINDING SITE FOR RESIDUE MG A 103' AC4 Software B SR 101 ? 8 'BINDING SITE FOR RESIDUE SR B 101' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 C6G A 4 ? C6G A 4 . ? 1_555 ? 2 AC1 14 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 14 DA A 6 ? DA A 6 . ? 1_555 ? 4 AC1 14 DT A 7 ? DT A 7 . ? 1_555 ? 5 AC1 14 DT A 8 ? DT A 8 . ? 1_555 ? 6 AC1 14 DT A 9 ? DT A 9 . ? 1_555 ? 7 AC1 14 HOH G . ? HOH A 226 . ? 1_555 ? 8 AC1 14 HOH G . ? HOH A 242 . ? 1_555 ? 9 AC1 14 HOH G . ? HOH A 243 . ? 1_555 ? 10 AC1 14 DA B 6 ? DA B 18 . ? 1_555 ? 11 AC1 14 DT B 7 ? DT B 19 . ? 1_555 ? 12 AC1 14 DT B 8 ? DT B 20 . ? 1_555 ? 13 AC1 14 DT B 9 ? DT B 21 . ? 1_555 ? 14 AC1 14 HOH H . ? HOH B 211 . ? 1_555 ? 15 AC2 3 DT A 9 ? DT A 9 . ? 1_555 ? 16 AC2 3 HOH G . ? HOH A 225 . ? 1_555 ? 17 AC2 3 HOH H . ? HOH B 257 . ? 1_555 ? 18 AC3 7 HOH G . ? HOH A 209 . ? 1_555 ? 19 AC3 7 HOH G . ? HOH A 221 . ? 1_555 ? 20 AC3 7 HOH G . ? HOH A 247 . ? 1_555 ? 21 AC3 7 HOH G . ? HOH A 248 . ? 1_555 ? 22 AC3 7 SR F . ? SR B 101 . ? 1_555 ? 23 AC3 7 HOH H . ? HOH B 222 . ? 1_555 ? 24 AC3 7 HOH H . ? HOH B 223 . ? 1_555 ? 25 AC4 8 DA A 6 ? DA A 6 . ? 3_655 ? 26 AC4 8 MG E . ? MG A 103 . ? 1_555 ? 27 AC4 8 HOH G . ? HOH A 207 . ? 1_555 ? 28 AC4 8 HOH G . ? HOH A 248 . ? 1_555 ? 29 AC4 8 DT B 9 ? DT B 21 . ? 1_555 ? 30 AC4 8 HOH H . ? HOH B 218 . ? 1_555 ? 31 AC4 8 HOH H . ? HOH B 222 . ? 1_555 ? 32 AC4 8 HOH H . ? HOH B 223 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.418 1.374 0.044 0.007 N 2 1 "C2'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.455 1.518 -0.063 0.010 N 3 1 "O3'" A DC 3 ? ? "C3'" A DC 3 ? ? 1.377 1.419 -0.042 0.006 N 4 1 "O3'" A C6G 4 ? ? P A DA 5 ? ? 1.734 1.607 0.127 0.012 Y 5 1 C4 A DA 5 ? ? C5 A DA 5 ? ? 1.340 1.383 -0.043 0.007 N 6 1 C8 A DA 5 ? ? N9 A DA 5 ? ? 1.320 1.373 -0.053 0.008 N 7 1 N9 A DA 5 ? ? C4 A DA 5 ? ? 1.417 1.374 0.043 0.006 N 8 1 C5 A DT 7 ? ? C6 A DT 7 ? ? 1.278 1.339 -0.061 0.007 N 9 1 C6 A DT 7 ? ? N1 A DT 7 ? ? 1.446 1.378 0.068 0.007 N 10 1 C6 A DT 8 ? ? N1 A DT 8 ? ? 1.451 1.378 0.073 0.007 N 11 1 P A DG 12 ? ? "O5'" A DG 12 ? ? 1.654 1.593 0.061 0.010 N 12 1 "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 1.560 1.512 0.048 0.007 N 13 1 "O3'" B DC 13 ? ? "C3'" B DC 13 ? ? 1.382 1.419 -0.037 0.006 N 14 1 N3 B DC 13 ? ? C4 B DC 13 ? ? 1.288 1.335 -0.047 0.007 N 15 1 "C3'" B DG 14 ? ? "C2'" B DG 14 ? ? 1.443 1.516 -0.073 0.008 N 16 1 N9 B DG 14 ? ? C4 B DG 14 ? ? 1.434 1.375 0.059 0.008 N 17 1 "O3'" B DC 15 ? ? "C3'" B DC 15 ? ? 1.341 1.419 -0.078 0.006 N 18 1 C2 B DC 15 ? ? N3 B DC 15 ? ? 1.294 1.353 -0.059 0.008 N 19 1 N3 B DA 18 ? ? C4 B DA 18 ? ? 1.292 1.344 -0.052 0.006 N 20 1 N9 B DA 18 ? ? C4 B DA 18 ? ? 1.411 1.374 0.037 0.006 N 21 1 "O3'" B DG 22 ? ? "C3'" B DG 22 ? ? 1.370 1.419 -0.049 0.006 N 22 1 N3 B DC 23 ? ? C4 B DC 23 ? ? 1.284 1.335 -0.051 0.007 N 23 1 "O3'" B DG 24 ? ? "C3'" B DG 24 ? ? 1.379 1.419 -0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 117.57 120.30 -2.73 0.40 N 2 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.61 109.40 -7.79 0.80 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 103.16 108.00 -4.84 0.70 N 4 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 113.45 110.80 2.65 0.40 N 5 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 130.17 119.60 10.57 1.50 N 6 1 C5 A DA 5 ? ? N7 A DA 5 ? ? C8 A DA 5 ? ? 99.53 103.90 -4.37 0.50 N 7 1 N7 A DA 5 ? ? C8 A DA 5 ? ? N9 A DA 5 ? ? 118.60 113.80 4.80 0.50 N 8 1 C8 A DA 5 ? ? N9 A DA 5 ? ? C4 A DA 5 ? ? 103.27 105.80 -2.53 0.40 N 9 1 C6 A DT 7 ? ? N1 A DT 7 ? ? C2 A DT 7 ? ? 118.03 121.30 -3.27 0.50 N 10 1 N3 A DT 9 ? ? C2 A DT 9 ? ? O2 A DT 9 ? ? 127.05 122.30 4.75 0.60 N 11 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 94.69 102.40 -7.71 0.80 N 12 1 "O4'" A DC 11 ? ? "C4'" A DC 11 ? ? "C3'" A DC 11 ? ? 98.24 104.50 -6.26 0.40 N 13 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 96.71 102.40 -5.69 0.80 N 14 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 101.93 108.00 -6.07 0.70 N 15 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 104.33 109.40 -5.07 0.80 N 16 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? "C2'" B DC 13 ? ? 100.35 105.90 -5.55 0.80 N 17 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 124.01 119.90 4.11 0.50 N 18 1 "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? "C4'" B DG 14 ? ? 103.66 109.40 -5.74 0.80 N 19 1 C6 B DG 14 ? ? N1 B DG 14 ? ? C2 B DG 14 ? ? 129.13 125.10 4.03 0.60 N 20 1 N1 B DG 14 ? ? C2 B DG 14 ? ? N3 B DG 14 ? ? 119.71 123.90 -4.19 0.60 N 21 1 N3 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 132.49 128.60 3.89 0.50 N 22 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 113.31 110.80 2.51 0.40 N 23 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 100.43 105.90 -5.47 0.80 N 24 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 103.24 108.00 -4.76 0.70 N 25 1 C5 B DT 21 ? ? C6 B DT 21 ? ? N1 B DT 21 ? ? 127.81 123.70 4.11 0.60 N 26 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.34 102.40 -5.06 0.80 N 27 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 123.17 119.90 3.27 0.50 N 28 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 131.70 119.60 12.10 1.50 N 29 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 97.48 105.70 -8.22 0.90 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A C6G 4 A C6G 4 ? DG ? 2 B C6G 4 B C6G 16 ? DG ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MAJOR GROOVE BINDER' # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal C6G P P N N 1 C6G OP1 O N N 2 C6G OP2 O N N 3 C6G "O5'" O N N 4 C6G "C5'" C N N 5 C6G "C4'" C N R 6 C6G "O4'" O N N 7 C6G "C1'" C N R 8 C6G N9 N Y N 9 C6G C8 C Y N 10 C6G N7 N Y N 11 C6G C5 C Y N 12 C6G C4 C Y N 13 C6G N3 N Y N 14 C6G C2 C Y N 15 C6G N2 N N N 16 C6G N1 N Y N 17 C6G C6 C Y N 18 C6G O6 O N N 19 C6G "C2'" C N N 20 C6G "C3'" C N S 21 C6G "O3'" O N N 22 C6G C C N N 23 C6G O O N N 24 C6G O7 O N N 25 C6G CH3 C N N 26 C6G HOP2 H N N 27 C6G "H5'" H N N 28 C6G "H5''" H N N 29 C6G "H4'" H N N 30 C6G "H1'" H N N 31 C6G H8 H N N 32 C6G H21 H N N 33 C6G H22 H N N 34 C6G "H2'" H N N 35 C6G "H2''" H N N 36 C6G "H3'" H N N 37 C6G "HO3'" H N N 38 C6G HO7 H N N 39 C6G H31 H N N 40 C6G H32 H N N 41 C6G OP3 O N N 42 C6G HOP3 H N N 43 DA OP3 O N N 44 DA P P N N 45 DA OP1 O N N 46 DA OP2 O N N 47 DA "O5'" O N N 48 DA "C5'" C N N 49 DA "C4'" C N R 50 DA "O4'" O N N 51 DA "C3'" C N S 52 DA "O3'" O N N 53 DA "C2'" C N N 54 DA "C1'" C N R 55 DA N9 N Y N 56 DA C8 C Y N 57 DA N7 N Y N 58 DA C5 C Y N 59 DA C6 C Y N 60 DA N6 N N N 61 DA N1 N Y N 62 DA C2 C Y N 63 DA N3 N Y N 64 DA C4 C Y N 65 DA HOP3 H N N 66 DA HOP2 H N N 67 DA "H5'" H N N 68 DA "H5''" H N N 69 DA "H4'" H N N 70 DA "H3'" H N N 71 DA "HO3'" H N N 72 DA "H2'" H N N 73 DA "H2''" H N N 74 DA "H1'" H N N 75 DA H8 H N N 76 DA H61 H N N 77 DA H62 H N N 78 DA H2 H N N 79 DC OP3 O N N 80 DC P P N N 81 DC OP1 O N N 82 DC OP2 O N N 83 DC "O5'" O N N 84 DC "C5'" C N N 85 DC "C4'" C N R 86 DC "O4'" O N N 87 DC "C3'" C N S 88 DC "O3'" O N N 89 DC "C2'" C N N 90 DC "C1'" C N R 91 DC N1 N N N 92 DC C2 C N N 93 DC O2 O N N 94 DC N3 N N N 95 DC C4 C N N 96 DC N4 N N N 97 DC C5 C N N 98 DC C6 C N N 99 DC HOP3 H N N 100 DC HOP2 H N N 101 DC "H5'" H N N 102 DC "H5''" H N N 103 DC "H4'" H N N 104 DC "H3'" H N N 105 DC "HO3'" H N N 106 DC "H2'" H N N 107 DC "H2''" H N N 108 DC "H1'" H N N 109 DC H41 H N N 110 DC H42 H N N 111 DC H5 H N N 112 DC H6 H N N 113 DG OP3 O N N 114 DG P P N N 115 DG OP1 O N N 116 DG OP2 O N N 117 DG "O5'" O N N 118 DG "C5'" C N N 119 DG "C4'" C N R 120 DG "O4'" O N N 121 DG "C3'" C N S 122 DG "O3'" O N N 123 DG "C2'" C N N 124 DG "C1'" C N R 125 DG N9 N Y N 126 DG C8 C Y N 127 DG N7 N Y N 128 DG C5 C Y N 129 DG C6 C N N 130 DG O6 O N N 131 DG N1 N N N 132 DG C2 C N N 133 DG N2 N N N 134 DG N3 N N N 135 DG C4 C Y N 136 DG HOP3 H N N 137 DG HOP2 H N N 138 DG "H5'" H N N 139 DG "H5''" H N N 140 DG "H4'" H N N 141 DG "H3'" H N N 142 DG "HO3'" H N N 143 DG "H2'" H N N 144 DG "H2''" H N N 145 DG "H1'" H N N 146 DG H8 H N N 147 DG H1 H N N 148 DG H21 H N N 149 DG H22 H N N 150 DT OP3 O N N 151 DT P P N N 152 DT OP1 O N N 153 DT OP2 O N N 154 DT "O5'" O N N 155 DT "C5'" C N N 156 DT "C4'" C N R 157 DT "O4'" O N N 158 DT "C3'" C N S 159 DT "O3'" O N N 160 DT "C2'" C N N 161 DT "C1'" C N R 162 DT N1 N N N 163 DT C2 C N N 164 DT O2 O N N 165 DT N3 N N N 166 DT C4 C N N 167 DT O4 O N N 168 DT C5 C N N 169 DT C7 C N N 170 DT C6 C N N 171 DT HOP3 H N N 172 DT HOP2 H N N 173 DT "H5'" H N N 174 DT "H5''" H N N 175 DT "H4'" H N N 176 DT "H3'" H N N 177 DT "HO3'" H N N 178 DT "H2'" H N N 179 DT "H2''" H N N 180 DT "H1'" H N N 181 DT H3 H N N 182 DT H71 H N N 183 DT H72 H N N 184 DT H73 H N N 185 DT H6 H N N 186 HOH O O N N 187 HOH H1 H N N 188 HOH H2 H N N 189 HT O1 O N N 190 HT C1 C Y N 191 HT C4 C Y N 192 HT C2 C Y N 193 HT C3 C Y N 194 HT C6 C Y N 195 HT C5 C Y N 196 HT C7 C Y N 197 HT N1 N Y N 198 HT C8 C Y N 199 HT C9 C Y N 200 HT N2 N Y N 201 HT C10 C Y N 202 HT C11 C Y N 203 HT C12 C Y N 204 HT C13 C Y N 205 HT C14 C Y N 206 HT N3 N Y N 207 HT C15 C Y N 208 HT C16 C Y N 209 HT N4 N Y N 210 HT C17 C Y N 211 HT C18 C Y N 212 HT C19 C Y N 213 HT C20 C Y N 214 HT N5 N N N 215 HT C21 C N N 216 HT C22 C N N 217 HT N6 N N N 218 HT C23 C N N 219 HT C24 C N N 220 HT C25 C N N 221 HT HO1 H N N 222 HT H2 H N N 223 HT H3 H N N 224 HT H5 H N N 225 HT H6 H N N 226 HT HN1 H N N 227 HT H10 H N N 228 HT H11 H N N 229 HT H13 H N N 230 HT HN3 H N N 231 HT H17 H N N 232 HT H18 H N N 233 HT H20 H N N 234 HT H211 H N N 235 HT H212 H N N 236 HT H221 H N N 237 HT H222 H N N 238 HT H231 H N N 239 HT H232 H N N 240 HT H241 H N N 241 HT H242 H N N 242 HT H253 H N N 243 HT H252 H N N 244 HT H251 H N N 245 MG MG MG N N 246 SR SR SR N N 247 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C6G OP1 P doub N N 1 C6G P OP2 sing N N 2 C6G P "O5'" sing N N 3 C6G O C doub N N 4 C6G C O7 sing N N 5 C6G C CH3 sing N N 6 C6G "O5'" "C5'" sing N N 7 C6G "C5'" "C4'" sing N N 8 C6G N7 C8 doub Y N 9 C6G N7 C5 sing Y N 10 C6G C8 N9 sing Y N 11 C6G O6 CH3 sing N N 12 C6G O6 C6 sing N N 13 C6G "C2'" "C3'" sing N N 14 C6G "C2'" "C1'" sing N N 15 C6G C5 C6 doub Y N 16 C6G C5 C4 sing Y N 17 C6G C6 N1 sing Y N 18 C6G N9 C4 sing Y N 19 C6G N9 "C1'" sing N N 20 C6G "C3'" "C4'" sing N N 21 C6G "C3'" "O3'" sing N N 22 C6G C4 N3 doub Y N 23 C6G "C4'" "O4'" sing N N 24 C6G N1 C2 doub Y N 25 C6G "C1'" "O4'" sing N N 26 C6G N3 C2 sing Y N 27 C6G C2 N2 sing N N 28 C6G OP2 HOP2 sing N N 29 C6G "C5'" "H5'" sing N N 30 C6G "C5'" "H5''" sing N N 31 C6G "C4'" "H4'" sing N N 32 C6G "C1'" "H1'" sing N N 33 C6G C8 H8 sing N N 34 C6G N2 H21 sing N N 35 C6G N2 H22 sing N N 36 C6G "C2'" "H2'" sing N N 37 C6G "C2'" "H2''" sing N N 38 C6G "C3'" "H3'" sing N N 39 C6G "O3'" "HO3'" sing N N 40 C6G O7 HO7 sing N N 41 C6G CH3 H31 sing N N 42 C6G CH3 H32 sing N N 43 C6G P OP3 sing N N 44 C6G OP3 HOP3 sing N N 45 DA OP3 P sing N N 46 DA OP3 HOP3 sing N N 47 DA P OP1 doub N N 48 DA P OP2 sing N N 49 DA P "O5'" sing N N 50 DA OP2 HOP2 sing N N 51 DA "O5'" "C5'" sing N N 52 DA "C5'" "C4'" sing N N 53 DA "C5'" "H5'" sing N N 54 DA "C5'" "H5''" sing N N 55 DA "C4'" "O4'" sing N N 56 DA "C4'" "C3'" sing N N 57 DA "C4'" "H4'" sing N N 58 DA "O4'" "C1'" sing N N 59 DA "C3'" "O3'" sing N N 60 DA "C3'" "C2'" sing N N 61 DA "C3'" "H3'" sing N N 62 DA "O3'" "HO3'" sing N N 63 DA "C2'" "C1'" sing N N 64 DA "C2'" "H2'" sing N N 65 DA "C2'" "H2''" sing N N 66 DA "C1'" N9 sing N N 67 DA "C1'" "H1'" sing N N 68 DA N9 C8 sing Y N 69 DA N9 C4 sing Y N 70 DA C8 N7 doub Y N 71 DA C8 H8 sing N N 72 DA N7 C5 sing Y N 73 DA C5 C6 sing Y N 74 DA C5 C4 doub Y N 75 DA C6 N6 sing N N 76 DA C6 N1 doub Y N 77 DA N6 H61 sing N N 78 DA N6 H62 sing N N 79 DA N1 C2 sing Y N 80 DA C2 N3 doub Y N 81 DA C2 H2 sing N N 82 DA N3 C4 sing Y N 83 DC OP3 P sing N N 84 DC OP3 HOP3 sing N N 85 DC P OP1 doub N N 86 DC P OP2 sing N N 87 DC P "O5'" sing N N 88 DC OP2 HOP2 sing N N 89 DC "O5'" "C5'" sing N N 90 DC "C5'" "C4'" sing N N 91 DC "C5'" "H5'" sing N N 92 DC "C5'" "H5''" sing N N 93 DC "C4'" "O4'" sing N N 94 DC "C4'" "C3'" sing N N 95 DC "C4'" "H4'" sing N N 96 DC "O4'" "C1'" sing N N 97 DC "C3'" "O3'" sing N N 98 DC "C3'" "C2'" sing N N 99 DC "C3'" "H3'" sing N N 100 DC "O3'" "HO3'" sing N N 101 DC "C2'" "C1'" sing N N 102 DC "C2'" "H2'" sing N N 103 DC "C2'" "H2''" sing N N 104 DC "C1'" N1 sing N N 105 DC "C1'" "H1'" sing N N 106 DC N1 C2 sing N N 107 DC N1 C6 sing N N 108 DC C2 O2 doub N N 109 DC C2 N3 sing N N 110 DC N3 C4 doub N N 111 DC C4 N4 sing N N 112 DC C4 C5 sing N N 113 DC N4 H41 sing N N 114 DC N4 H42 sing N N 115 DC C5 C6 doub N N 116 DC C5 H5 sing N N 117 DC C6 H6 sing N N 118 DG OP3 P sing N N 119 DG OP3 HOP3 sing N N 120 DG P OP1 doub N N 121 DG P OP2 sing N N 122 DG P "O5'" sing N N 123 DG OP2 HOP2 sing N N 124 DG "O5'" "C5'" sing N N 125 DG "C5'" "C4'" sing N N 126 DG "C5'" "H5'" sing N N 127 DG "C5'" "H5''" sing N N 128 DG "C4'" "O4'" sing N N 129 DG "C4'" "C3'" sing N N 130 DG "C4'" "H4'" sing N N 131 DG "O4'" "C1'" sing N N 132 DG "C3'" "O3'" sing N N 133 DG "C3'" "C2'" sing N N 134 DG "C3'" "H3'" sing N N 135 DG "O3'" "HO3'" sing N N 136 DG "C2'" "C1'" sing N N 137 DG "C2'" "H2'" sing N N 138 DG "C2'" "H2''" sing N N 139 DG "C1'" N9 sing N N 140 DG "C1'" "H1'" sing N N 141 DG N9 C8 sing Y N 142 DG N9 C4 sing Y N 143 DG C8 N7 doub Y N 144 DG C8 H8 sing N N 145 DG N7 C5 sing Y N 146 DG C5 C6 sing N N 147 DG C5 C4 doub Y N 148 DG C6 O6 doub N N 149 DG C6 N1 sing N N 150 DG N1 C2 sing N N 151 DG N1 H1 sing N N 152 DG C2 N2 sing N N 153 DG C2 N3 doub N N 154 DG N2 H21 sing N N 155 DG N2 H22 sing N N 156 DG N3 C4 sing N N 157 DT OP3 P sing N N 158 DT OP3 HOP3 sing N N 159 DT P OP1 doub N N 160 DT P OP2 sing N N 161 DT P "O5'" sing N N 162 DT OP2 HOP2 sing N N 163 DT "O5'" "C5'" sing N N 164 DT "C5'" "C4'" sing N N 165 DT "C5'" "H5'" sing N N 166 DT "C5'" "H5''" sing N N 167 DT "C4'" "O4'" sing N N 168 DT "C4'" "C3'" sing N N 169 DT "C4'" "H4'" sing N N 170 DT "O4'" "C1'" sing N N 171 DT "C3'" "O3'" sing N N 172 DT "C3'" "C2'" sing N N 173 DT "C3'" "H3'" sing N N 174 DT "O3'" "HO3'" sing N N 175 DT "C2'" "C1'" sing N N 176 DT "C2'" "H2'" sing N N 177 DT "C2'" "H2''" sing N N 178 DT "C1'" N1 sing N N 179 DT "C1'" "H1'" sing N N 180 DT N1 C2 sing N N 181 DT N1 C6 sing N N 182 DT C2 O2 doub N N 183 DT C2 N3 sing N N 184 DT N3 C4 sing N N 185 DT N3 H3 sing N N 186 DT C4 O4 doub N N 187 DT C4 C5 sing N N 188 DT C5 C7 sing N N 189 DT C5 C6 doub N N 190 DT C7 H71 sing N N 191 DT C7 H72 sing N N 192 DT C7 H73 sing N N 193 DT C6 H6 sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 HT O1 C1 sing N N 197 HT O1 HO1 sing N N 198 HT C1 C2 doub Y N 199 HT C1 C6 sing Y N 200 HT C2 C3 sing Y N 201 HT C2 H2 sing N N 202 HT C3 C4 doub Y N 203 HT C3 H3 sing N N 204 HT C4 C5 sing Y N 205 HT C4 C7 sing Y N 206 HT C5 C6 doub Y N 207 HT C5 H5 sing N N 208 HT C6 H6 sing N N 209 HT C7 N1 sing Y N 210 HT C7 N2 doub Y N 211 HT N1 C8 sing Y N 212 HT N1 HN1 sing N N 213 HT C8 C9 doub Y N 214 HT C8 C13 sing Y N 215 HT C9 N2 sing Y N 216 HT C9 C10 sing Y N 217 HT C10 C11 doub Y N 218 HT C10 H10 sing N N 219 HT C11 C12 sing Y N 220 HT C11 H11 sing N N 221 HT C12 C13 doub Y N 222 HT C12 C14 sing Y N 223 HT C13 H13 sing N N 224 HT C14 N3 sing Y N 225 HT C14 N4 doub Y N 226 HT N3 C15 sing Y N 227 HT N3 HN3 sing N N 228 HT C15 C16 doub Y N 229 HT C15 C20 sing Y N 230 HT C16 N4 sing Y N 231 HT C16 C17 sing Y N 232 HT C17 C18 doub Y N 233 HT C17 H17 sing N N 234 HT C18 C19 sing Y N 235 HT C18 H18 sing N N 236 HT C19 C20 doub Y N 237 HT C19 N5 sing N N 238 HT C20 H20 sing N N 239 HT N5 C21 sing N N 240 HT N5 C24 sing N N 241 HT C21 C22 sing N N 242 HT C21 H211 sing N N 243 HT C21 H212 sing N N 244 HT C22 N6 sing N N 245 HT C22 H221 sing N N 246 HT C22 H222 sing N N 247 HT N6 C23 sing N N 248 HT N6 C25 sing N N 249 HT C23 C24 sing N N 250 HT C23 H231 sing N N 251 HT C23 H232 sing N N 252 HT C24 H241 sing N N 253 HT C24 H242 sing N N 254 HT C25 H253 sing N N 255 HT C25 H252 sing N N 256 HT C25 H251 sing N N 257 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4O5W 'double helix' 4O5W 'b-form double helix' 4O5W 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.124 -0.202 0.199 -5.487 -8.347 -2.412 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.223 -0.167 0.149 -3.578 -9.447 -3.667 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.044 -0.173 -0.043 0.524 1.528 -2.237 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.230 -0.088 -0.004 7.010 -20.275 4.074 4 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.112 -0.147 0.049 0.588 -19.288 5.382 5 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.085 -0.148 0.054 -2.197 -20.124 4.974 6 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.112 -0.145 0.103 -8.588 -16.767 1.994 7 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 -0.189 -0.227 0.005 2.181 3.540 0.490 8 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.185 -0.208 0.237 6.943 -16.212 -2.827 9 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.143 -0.128 0.183 4.534 -7.428 -1.855 10 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.588 0.392 3.246 -1.427 1.502 37.797 0.412 0.723 3.278 2.317 2.201 37.851 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.816 0.548 3.299 1.771 -3.698 39.381 1.246 -0.995 3.268 -5.470 -2.619 39.585 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DA 5 1_555 B DT 8 1_555 0.051 0.285 6.559 1.974 6.786 62.992 -0.330 0.126 6.554 6.473 -1.883 63.346 3 AA_DC3DA5:DT20DG22_BB A 3 ? B 22 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.130 -0.055 3.368 -1.972 1.127 38.364 -0.228 -0.451 3.355 1.713 2.998 38.429 4 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.051 -0.538 3.275 0.235 0.734 30.684 -1.161 0.143 3.261 1.386 -0.444 30.693 5 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.204 -0.242 3.382 0.995 -0.132 36.852 -0.364 0.462 3.376 -0.208 -1.574 36.865 6 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DG 10 1_555 B DC 3 1_555 -0.092 0.492 6.469 -1.994 -0.116 66.172 0.460 -0.074 6.469 -0.106 1.826 66.199 7 AA_DT8DG10:DC15DA17_BB A 8 ? B 17 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.954 0.797 3.296 -2.219 -7.127 43.147 1.747 1.069 3.174 -9.605 2.990 43.758 8 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.776 0.673 3.391 3.977 1.176 36.103 0.906 -0.660 3.473 1.889 -6.392 36.333 9 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 4O5W _atom_sites.fract_transf_matrix[1][1] 0.038665 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024818 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015322 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P SR # loop_