HEADER HYDROLASE 20-DEC-13 4O6I TITLE 2.0A CRYSTAL STRUCTURE OF LYMPHOCYTIC CHORIOMENINGITIS VIRUS TITLE 2 NUCLEOPROTEIN C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN, PROTEIN N; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYMPHOCYTIC CHORIOMENINGITIS VIRUS; SOURCE 3 ORGANISM_COMMON: LCMV; SOURCE 4 ORGANISM_TAXID: 11624; SOURCE 5 STRAIN: ARMSTRONG; SOURCE 6 GENE: N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET46 KEYWDS EXORIBONUCLEASE, RIBONUCLEOPROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.R.WEST,K.M.HASTIE,E.O.SAPHIRE REVDAT 3 20-SEP-23 4O6I 1 REMARK SEQADV LINK REVDAT 2 02-JUL-14 4O6I 1 JRNL REVDAT 1 11-JUN-14 4O6I 0 JRNL AUTH B.R.WEST,K.M.HASTIE,E.O.SAPHIRE JRNL TITL STRUCTURE OF THE LCMV NUCLEOPROTEIN PROVIDES A TEMPLATE FOR JRNL TITL 2 UNDERSTANDING ARENAVIRUS REPLICATION AND IMMUNOSUPPRESSION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 1764 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24914986 JRNL DOI 10.1107/S1399004714007883 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9621 - 5.0363 0.99 2682 139 0.1646 0.1639 REMARK 3 2 5.0363 - 3.9987 1.00 2695 144 0.1549 0.1674 REMARK 3 3 3.9987 - 3.4936 1.00 2691 127 0.1892 0.2217 REMARK 3 4 3.4936 - 3.1744 1.00 2673 141 0.2187 0.2457 REMARK 3 5 3.1744 - 2.9469 1.00 2684 147 0.2647 0.2762 REMARK 3 6 2.9469 - 2.7732 1.00 2683 139 0.2906 0.3334 REMARK 3 7 2.7732 - 2.6344 1.00 2635 144 0.2831 0.3005 REMARK 3 8 2.6344 - 2.5197 1.00 2686 147 0.2927 0.3346 REMARK 3 9 2.5197 - 2.4227 0.99 2685 125 0.2672 0.2856 REMARK 3 10 2.4227 - 2.3392 1.00 2657 140 0.2676 0.3177 REMARK 3 11 2.3392 - 2.2660 1.00 2673 134 0.2675 0.2672 REMARK 3 12 2.2660 - 2.2013 1.00 2641 143 0.2831 0.3268 REMARK 3 13 2.2013 - 2.1433 1.00 2651 151 0.2865 0.3259 REMARK 3 14 2.1433 - 2.0910 1.00 2650 148 0.3156 0.3443 REMARK 3 15 2.0910 - 2.0435 1.00 2683 149 0.3274 0.3556 REMARK 3 16 2.0435 - 2.0000 1.00 2624 156 0.3595 0.3543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3333 REMARK 3 ANGLE : 0.639 4474 REMARK 3 CHIRALITY : 0.028 486 REMARK 3 PLANARITY : 0.002 588 REMARK 3 DIHEDRAL : 12.250 1226 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.955 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3Q7C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS, 300 MM NACL, PROTEIN REMARK 280 CONCENTRATION AT 1.15 MG/ML, PH 8, EPPENDORF CRYSTALLIZATION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.29400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.64700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.97050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 24.32350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 121.61750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 326 REMARK 465 ALA A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 VAL A 334 REMARK 465 ASP A 335 REMARK 465 ASP A 336 REMARK 465 ASP A 337 REMARK 465 ASP A 338 REMARK 465 ARG A 339 REMARK 465 MET A 340 REMARK 465 VAL A 341 REMARK 465 ASN A 342 REMARK 465 SER A 343 REMARK 465 PRO A 344 REMARK 465 ARG A 345 REMARK 465 PRO A 346 REMARK 465 ALA A 347 REMARK 465 PRO A 348 REMARK 465 GLY A 349 REMARK 465 ALA A 350 REMARK 465 ALA A 351 REMARK 465 GLY A 352 REMARK 465 PRO A 353 REMARK 465 PRO A 354 REMARK 465 GLN A 355 REMARK 465 VAL A 356 REMARK 465 MET B 326 REMARK 465 ALA B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 VAL B 334 REMARK 465 ASP B 335 REMARK 465 ASP B 336 REMARK 465 ASP B 337 REMARK 465 ASP B 338 REMARK 465 ARG B 339 REMARK 465 MET B 340 REMARK 465 VAL B 341 REMARK 465 ASN B 342 REMARK 465 SER B 343 REMARK 465 PRO B 344 REMARK 465 ARG B 345 REMARK 465 PRO B 346 REMARK 465 ALA B 347 REMARK 465 PRO B 348 REMARK 465 GLY B 349 REMARK 465 ALA B 350 REMARK 465 ALA B 351 REMARK 465 GLY B 352 REMARK 465 PRO B 353 REMARK 465 PRO B 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 482 CG CD OE1 OE2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 LYS A 511 CG CD CE NZ REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 GLN B 355 CG CD OE1 NE2 REMARK 470 VAL B 356 CG1 CG2 REMARK 470 ARG B 481 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 482 CG CD OE1 OE2 REMARK 470 ARG B 485 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 512 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 389 56.74 -154.49 REMARK 500 SER A 423 -75.40 -147.24 REMARK 500 ARG A 469 57.17 -119.61 REMARK 500 ASP A 508 -158.42 -78.58 REMARK 500 ASP B 389 54.99 -159.14 REMARK 500 SER B 423 -74.03 -142.23 REMARK 500 ARG B 469 56.00 -118.55 REMARK 500 GLU B 478 97.63 -62.44 REMARK 500 LYS B 511 17.34 58.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 382 OD1 REMARK 620 2 GLU A 384 OE2 114.2 REMARK 620 3 ASP A 522 OD2 121.0 112.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 392 OE2 REMARK 620 2 CYS A 499 SG 98.6 REMARK 620 3 HIS A 502 NE2 111.4 107.6 REMARK 620 4 CYS A 518 SG 114.5 120.1 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 382 OD1 REMARK 620 2 GLU B 384 OE2 121.4 REMARK 620 3 ASP B 522 OD2 113.3 104.5 REMARK 620 4 HOH B 771 O 81.4 101.8 135.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 392 OE2 REMARK 620 2 CYS B 499 SG 101.9 REMARK 620 3 HIS B 502 NE2 118.6 106.8 REMARK 620 4 CYS B 518 SG 106.4 118.1 105.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 607 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O6H RELATED DB: PDB DBREF 4O6I A 341 558 UNP P09992 NCAP_LYCVA 341 558 DBREF 4O6I B 341 558 UNP P09992 NCAP_LYCVA 341 558 SEQADV 4O6I MET A 326 UNP P09992 EXPRESSION TAG SEQADV 4O6I ALA A 327 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 328 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 329 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 330 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 331 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 332 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS A 333 UNP P09992 EXPRESSION TAG SEQADV 4O6I VAL A 334 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP A 335 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP A 336 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP A 337 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP A 338 UNP P09992 EXPRESSION TAG SEQADV 4O6I ARG A 339 UNP P09992 EXPRESSION TAG SEQADV 4O6I MET A 340 UNP P09992 EXPRESSION TAG SEQADV 4O6I MET B 326 UNP P09992 EXPRESSION TAG SEQADV 4O6I ALA B 327 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 328 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 329 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 330 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 331 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 332 UNP P09992 EXPRESSION TAG SEQADV 4O6I HIS B 333 UNP P09992 EXPRESSION TAG SEQADV 4O6I VAL B 334 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP B 335 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP B 336 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP B 337 UNP P09992 EXPRESSION TAG SEQADV 4O6I ASP B 338 UNP P09992 EXPRESSION TAG SEQADV 4O6I ARG B 339 UNP P09992 EXPRESSION TAG SEQADV 4O6I MET B 340 UNP P09992 EXPRESSION TAG SEQRES 1 A 233 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 233 ARG MET VAL ASN SER PRO ARG PRO ALA PRO GLY ALA ALA SEQRES 3 A 233 GLY PRO PRO GLN VAL GLY LEU SER TYR SER GLN THR MET SEQRES 4 A 233 LEU LEU LYS ASP LEU MET GLY GLY ILE ASP PRO ASN ALA SEQRES 5 A 233 PRO THR TRP ILE ASP ILE GLU GLY ARG PHE ASN ASP PRO SEQRES 6 A 233 VAL GLU ILE ALA ILE PHE GLN PRO GLN ASN GLY GLN PHE SEQRES 7 A 233 ILE HIS PHE TYR ARG GLU PRO VAL ASP GLN LYS GLN PHE SEQRES 8 A 233 LYS GLN ASP SER LYS TYR SER HIS GLY MET ASP LEU ALA SEQRES 9 A 233 ASP LEU PHE ASN ALA GLN PRO GLY LEU THR SER SER VAL SEQRES 10 A 233 ILE GLY ALA LEU PRO GLN GLY MET VAL LEU SER CYS GLN SEQRES 11 A 233 GLY SER ASP ASP ILE ARG LYS LEU LEU ASP SER GLN ASN SEQRES 12 A 233 ARG LYS ASP ILE LYS LEU ILE ASP VAL GLU MET THR ARG SEQRES 13 A 233 GLU ALA SER ARG GLU TYR GLU ASP LYS VAL TRP ASP LYS SEQRES 14 A 233 TYR GLY TRP LEU CYS LYS MET HIS THR GLY ILE VAL ARG SEQRES 15 A 233 ASP LYS LYS LYS LYS GLU ILE THR PRO HIS CYS ALA LEU SEQRES 16 A 233 MET ASP CYS ILE ILE PHE GLU SER ALA SER LYS ALA ARG SEQRES 17 A 233 LEU PRO ASP LEU LYS THR VAL HIS ASN ILE LEU PRO HIS SEQRES 18 A 233 ASP LEU ILE PHE ARG GLY PRO ASN VAL VAL THR LEU SEQRES 1 B 233 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 233 ARG MET VAL ASN SER PRO ARG PRO ALA PRO GLY ALA ALA SEQRES 3 B 233 GLY PRO PRO GLN VAL GLY LEU SER TYR SER GLN THR MET SEQRES 4 B 233 LEU LEU LYS ASP LEU MET GLY GLY ILE ASP PRO ASN ALA SEQRES 5 B 233 PRO THR TRP ILE ASP ILE GLU GLY ARG PHE ASN ASP PRO SEQRES 6 B 233 VAL GLU ILE ALA ILE PHE GLN PRO GLN ASN GLY GLN PHE SEQRES 7 B 233 ILE HIS PHE TYR ARG GLU PRO VAL ASP GLN LYS GLN PHE SEQRES 8 B 233 LYS GLN ASP SER LYS TYR SER HIS GLY MET ASP LEU ALA SEQRES 9 B 233 ASP LEU PHE ASN ALA GLN PRO GLY LEU THR SER SER VAL SEQRES 10 B 233 ILE GLY ALA LEU PRO GLN GLY MET VAL LEU SER CYS GLN SEQRES 11 B 233 GLY SER ASP ASP ILE ARG LYS LEU LEU ASP SER GLN ASN SEQRES 12 B 233 ARG LYS ASP ILE LYS LEU ILE ASP VAL GLU MET THR ARG SEQRES 13 B 233 GLU ALA SER ARG GLU TYR GLU ASP LYS VAL TRP ASP LYS SEQRES 14 B 233 TYR GLY TRP LEU CYS LYS MET HIS THR GLY ILE VAL ARG SEQRES 15 B 233 ASP LYS LYS LYS LYS GLU ILE THR PRO HIS CYS ALA LEU SEQRES 16 B 233 MET ASP CYS ILE ILE PHE GLU SER ALA SER LYS ALA ARG SEQRES 17 B 233 LEU PRO ASP LEU LYS THR VAL HIS ASN ILE LEU PRO HIS SEQRES 18 B 233 ASP LEU ILE PHE ARG GLY PRO ASN VAL VAL THR LEU HET ZN A 601 1 HET MG A 602 1 HET IMD A 603 10 HET IMD A 604 10 HET IMD A 605 10 HET IMD A 606 10 HET IMD A 607 10 HET ZN B 601 1 HET MG B 602 1 HET IMD B 603 10 HET IMD B 604 10 HET IMD B 605 10 HET IMD B 606 10 HET IMD B 607 10 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM IMD IMIDAZOLE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 IMD 10(C3 H5 N2 1+) FORMUL 17 HOH *142(H2 O) HELIX 1 1 SER A 359 MET A 370 1 12 HELIX 2 2 GLY A 371 ILE A 373 5 3 HELIX 3 3 ASP A 412 SER A 423 1 12 HELIX 4 4 ASP A 427 PHE A 432 5 6 HELIX 5 5 GLY A 437 LEU A 446 1 10 HELIX 6 6 GLY A 456 GLN A 467 1 12 HELIX 7 7 THR A 480 ARG A 485 1 6 HELIX 8 8 TYR A 487 GLY A 496 1 10 HELIX 9 9 TRP A 497 CYS A 499 5 3 HELIX 10 10 CYS A 518 ALA A 532 1 15 HELIX 11 11 PRO A 545 PHE A 550 1 6 HELIX 12 12 SER B 359 MET B 370 1 12 HELIX 13 13 GLY B 371 ILE B 373 5 3 HELIX 14 14 ASP B 412 SER B 423 1 12 HELIX 15 15 ASP B 427 PHE B 432 5 6 HELIX 16 16 GLY B 437 LEU B 446 1 10 HELIX 17 17 SER B 457 GLN B 467 1 11 HELIX 18 18 THR B 480 ARG B 485 1 6 HELIX 19 19 TYR B 487 GLY B 496 1 10 HELIX 20 20 TRP B 497 CYS B 499 5 3 HELIX 21 21 CYS B 518 ALA B 532 1 15 HELIX 22 22 PRO B 545 PHE B 550 1 6 SHEET 1 A 4 TRP A 380 ARG A 386 0 SHEET 2 A 4 ASP A 389 PHE A 396 -1 O PHE A 396 N TRP A 380 SHEET 3 A 4 GLN A 402 TYR A 407 -1 O ILE A 404 N ILE A 395 SHEET 4 A 4 HIS A 541 ASN A 542 1 O HIS A 541 N PHE A 403 SHEET 1 B 2 VAL A 451 CYS A 454 0 SHEET 2 B 2 LYS A 473 ASP A 476 1 O LYS A 473 N LEU A 452 SHEET 1 C 2 VAL A 506 ARG A 507 0 SHEET 2 C 2 GLU A 513 ILE A 514 -1 O ILE A 514 N VAL A 506 SHEET 1 D 4 TRP B 380 GLU B 384 0 SHEET 2 D 4 GLU B 392 PHE B 396 -1 O PHE B 396 N TRP B 380 SHEET 3 D 4 GLN B 402 TYR B 407 -1 O ILE B 404 N ILE B 395 SHEET 4 D 4 HIS B 541 ASN B 542 1 O HIS B 541 N PHE B 403 SHEET 1 E 2 VAL B 451 CYS B 454 0 SHEET 2 E 2 LYS B 473 ASP B 476 1 O LYS B 473 N LEU B 452 SHEET 1 F 2 VAL B 506 ARG B 507 0 SHEET 2 F 2 GLU B 513 ILE B 514 -1 O ILE B 514 N VAL B 506 LINK OD1 ASP A 382 MG MG A 602 1555 1555 2.13 LINK OE2 GLU A 384 MG MG A 602 1555 1555 2.14 LINK OE2 GLU A 392 ZN ZN A 601 1555 1555 2.03 LINK SG CYS A 499 ZN ZN A 601 1555 1555 2.31 LINK NE2 HIS A 502 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 518 ZN ZN A 601 1555 1555 2.23 LINK OD2 ASP A 522 MG MG A 602 1555 1555 2.13 LINK OD1 ASP B 382 MG MG B 602 1555 1555 2.14 LINK OE2 GLU B 384 MG MG B 602 1555 1555 2.13 LINK OE2 GLU B 392 ZN ZN B 601 1555 1555 2.03 LINK SG CYS B 499 ZN ZN B 601 1555 1555 2.29 LINK NE2 HIS B 502 ZN ZN B 601 1555 1555 2.04 LINK SG CYS B 518 ZN ZN B 601 1555 1555 2.25 LINK OD2 ASP B 522 MG MG B 602 1555 1555 2.10 LINK MG MG B 602 O HOH B 771 1555 1555 2.08 SITE 1 AC1 4 GLU A 392 CYS A 499 HIS A 502 CYS A 518 SITE 1 AC2 5 ASP A 382 ILE A 383 GLU A 384 ASP A 522 SITE 2 AC2 5 HOH A 770 SITE 1 AC3 2 ASN A 433 HIS A 546 SITE 1 AC4 2 TRP A 492 THR A 515 SITE 1 AC5 1 ASN A 542 SITE 1 AC6 5 TRP A 380 SER A 453 GLU A 527 SER A 530 SITE 2 AC6 5 LYS A 531 SITE 1 AC7 3 GLN A 448 ARG A 469 ASP A 471 SITE 1 AC8 4 GLU B 392 CYS B 499 HIS B 502 CYS B 518 SITE 1 AC9 5 ASP B 382 ILE B 383 GLU B 384 ASP B 522 SITE 2 AC9 5 HOH B 771 SITE 1 BC1 2 TRP B 492 THR B 515 SITE 1 BC2 5 TRP B 497 LEU B 498 HIS B 541 ASN B 542 SITE 2 BC2 5 HOH B 714 SITE 1 BC3 4 TRP B 380 SER B 453 GLU B 527 LYS B 531 SITE 1 BC4 2 GLN B 448 ARG B 469 SITE 1 BC5 2 ASN B 433 HIS B 546 CRYST1 89.962 89.962 145.941 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.006418 0.000000 0.00000 SCALE2 0.000000 0.012835 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006852 0.00000