data_4O7V # _entry.id 4O7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4O7V pdb_00004o7v 10.2210/pdb4o7v/pdb RCSB RCSB084152 ? ? WWPDB D_1000084152 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3U54 . unspecified PDB 3U55 . unspecified PDB 4O7L . unspecified PDB 4O7N . unspecified PDB 4O7R . unspecified PDB 4O7S . unspecified PDB 4O7T . unspecified PDB 4O7W . unspecified PDB 4O7Y . unspecified PDB 4O7Z . unspecified PDB 4O81 . unspecified PDB 4O82 . unspecified PDB 4O83 . unspecified PDB 4O84 . unspecified PDB 4O86 . unspecified # _pdbx_database_status.entry_id 4O7V _pdbx_database_status.status_code REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-12-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Manjunath, K.' 1 'Jeyakanthan, J.' 2 'Sekar, K.' 3 # _citation.id primary _citation.title 'SAICAR synthetase (Type-2) in complex with ADP and UDP/UMP' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manjunath, K.' 1 ? primary 'Jeyakanthan, J.' 2 ? primary 'Sekar, K.' 3 ? # _cell.length_a 44.160 _cell.length_b 155.120 _cell.length_c 78.300 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4O7V _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.entry_id 4O7V _symmetry.Int_Tables_number 20 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphoribosylaminoimidazole-succinocarboxamide synthase' 27480.061 1 6.3.2.6 ? ? ? 2 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 non-polymer syn "URIDINE-5'-MONOPHOSPHATE" 324.181 1 ? ? ? ? 5 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 6 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 7 water nat water 18.015 94 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'SAICAR synthetase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVKLMEVYEGKAKKMIPIDDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIV EKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLDEIKKIEEIALKVNEIL KDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGEKPEF ; _entity_poly.pdbx_seq_one_letter_code_can ;MVKLMEVYEGKAKKMIPIDDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIV EKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLDEIKKIEEIALKVNEIL KDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGEKPEF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 LYS n 1 4 LEU n 1 5 MET n 1 6 GLU n 1 7 VAL n 1 8 TYR n 1 9 GLU n 1 10 GLY n 1 11 LYS n 1 12 ALA n 1 13 LYS n 1 14 LYS n 1 15 MET n 1 16 ILE n 1 17 PRO n 1 18 ILE n 1 19 ASP n 1 20 ASP n 1 21 ASP n 1 22 LYS n 1 23 LEU n 1 24 ILE n 1 25 MET n 1 26 GLU n 1 27 PHE n 1 28 LYS n 1 29 ASP n 1 30 ASP n 1 31 ALA n 1 32 THR n 1 33 ALA n 1 34 PHE n 1 35 ASP n 1 36 GLY n 1 37 THR n 1 38 LYS n 1 39 LYS n 1 40 ALA n 1 41 ARG n 1 42 PHE n 1 43 LYS n 1 44 GLY n 1 45 LYS n 1 46 GLY n 1 47 TRP n 1 48 LEU n 1 49 ASN n 1 50 ALA n 1 51 GLN n 1 52 LEU n 1 53 SER n 1 54 VAL n 1 55 ILE n 1 56 PHE n 1 57 PHE n 1 58 LYS n 1 59 LEU n 1 60 LEU n 1 61 GLU n 1 62 GLU n 1 63 HIS n 1 64 GLY n 1 65 ILE n 1 66 LYS n 1 67 THR n 1 68 HIS n 1 69 PHE n 1 70 ILE n 1 71 GLY n 1 72 VAL n 1 73 ALA n 1 74 GLY n 1 75 GLY n 1 76 ASN n 1 77 ARG n 1 78 LEU n 1 79 ILE n 1 80 VAL n 1 81 GLU n 1 82 LYS n 1 83 LEU n 1 84 ASP n 1 85 MET n 1 86 TYR n 1 87 PRO n 1 88 LEU n 1 89 GLU n 1 90 VAL n 1 91 VAL n 1 92 VAL n 1 93 ARG n 1 94 ASN n 1 95 VAL n 1 96 VAL n 1 97 ALA n 1 98 GLY n 1 99 SER n 1 100 LEU n 1 101 LYS n 1 102 LYS n 1 103 ARG n 1 104 LEU n 1 105 PRO n 1 106 LEU n 1 107 PRO n 1 108 GLU n 1 109 GLY n 1 110 TYR n 1 111 GLU n 1 112 LEU n 1 113 PRO n 1 114 GLU n 1 115 PRO n 1 116 ILE n 1 117 VAL n 1 118 GLU n 1 119 LEU n 1 120 TYR n 1 121 TYR n 1 122 LYS n 1 123 ASN n 1 124 ASP n 1 125 GLU n 1 126 LEU n 1 127 HIS n 1 128 ASP n 1 129 PRO n 1 130 MET n 1 131 ILE n 1 132 ASN n 1 133 TYR n 1 134 TYR n 1 135 HIS n 1 136 ALA n 1 137 LYS n 1 138 VAL n 1 139 LEU n 1 140 GLY n 1 141 ILE n 1 142 SER n 1 143 LEU n 1 144 ASP n 1 145 GLU n 1 146 ILE n 1 147 LYS n 1 148 LYS n 1 149 ILE n 1 150 GLU n 1 151 GLU n 1 152 ILE n 1 153 ALA n 1 154 LEU n 1 155 LYS n 1 156 VAL n 1 157 ASN n 1 158 GLU n 1 159 ILE n 1 160 LEU n 1 161 LYS n 1 162 ASP n 1 163 TYR n 1 164 LEU n 1 165 ALA n 1 166 LYS n 1 167 LYS n 1 168 GLY n 1 169 ILE n 1 170 ILE n 1 171 LEU n 1 172 VAL n 1 173 ASP n 1 174 PHE n 1 175 LYS n 1 176 LEU n 1 177 GLU n 1 178 PHE n 1 179 GLY n 1 180 LYS n 1 181 ASP n 1 182 LYS n 1 183 ASN n 1 184 GLY n 1 185 ASP n 1 186 ILE n 1 187 VAL n 1 188 LEU n 1 189 ALA n 1 190 ASP n 1 191 GLU n 1 192 ILE n 1 193 SER n 1 194 PRO n 1 195 ASP n 1 196 THR n 1 197 CYS n 1 198 ARG n 1 199 PHE n 1 200 TRP n 1 201 ASP n 1 202 ALA n 1 203 LYS n 1 204 THR n 1 205 LYS n 1 206 ARG n 1 207 SER n 1 208 LEU n 1 209 ASP n 1 210 LYS n 1 211 ASP n 1 212 VAL n 1 213 PHE n 1 214 ARG n 1 215 PHE n 1 216 ASP n 1 217 LYS n 1 218 GLY n 1 219 ASP n 1 220 LEU n 1 221 ILE n 1 222 GLU n 1 223 ALA n 1 224 TYR n 1 225 LYS n 1 226 GLU n 1 227 ILE n 1 228 TYR n 1 229 GLU n 1 230 ARG n 1 231 ILE n 1 232 THR n 1 233 GLY n 1 234 GLU n 1 235 LYS n 1 236 PRO n 1 237 GLU n 1 238 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PH0239, purC' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain OT3 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 70601 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PUR7_PYRHO _struct_ref.pdbx_db_accession O57978 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVKLMEVYEGKAKKMIPIDDDKLIMEFKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIV EKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLDEIKKIEEIALKVNEIL KDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGEKPEF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4O7V _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 238 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O57978 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 238 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U5P non-polymer . "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4O7V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 1.440 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 49.59 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'Microbatch Underoil' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.2M Ammonium Sulphate, 0.1M Sodium acetate trihydrate, 30% w/v PEG monomethyl ether 2000, pH 4.6, Microbatch Underoil, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2012-11-24 _diffrn_detector.details Mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'OSMIC MIRROR' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 4O7V _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 55.10 _reflns.number_all ? _reflns.number_obs 12230 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.073 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.4 _reflns.B_iso_Wilson_estimate 27.1 _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.42 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs 0.259 _reflns_shell.meanI_over_sigI_obs 7.1 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 5.9 _reflns_shell.number_unique_all 10205 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4O7V _refine.ls_d_res_high 2.3000 _refine.ls_d_res_low 55.1000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.7800 _refine.ls_number_reflns_obs 12222 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1963 _refine.ls_R_factor_R_work 0.1934 _refine.ls_wR_factor_R_work 0.1685 _refine.ls_R_factor_R_free 0.2492 _refine.ls_wR_factor_R_free 0.2176 _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 629 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 22.9550 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1800 _refine.aniso_B[2][2] 0.0200 _refine.aniso_B[3][3] -0.2000 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9340 _refine.correlation_coeff_Fo_to_Fc_free 0.8890 _refine.overall_SU_R_Cruickshank_DPI 0.3413 _refine.overall_SU_R_free 0.2437 _refine.pdbx_overall_ESU_R 0.3410 _refine.pdbx_overall_ESU_R_Free 0.2440 _refine.overall_SU_ML 0.1630 _refine.overall_SU_B 6.6110 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3U55' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8396 _refine.B_iso_max 72.530 _refine.B_iso_min 5.050 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1822 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 82 _refine_hist.number_atoms_solvent 94 _refine_hist.number_atoms_total 1998 _refine_hist.d_res_high 2.3000 _refine_hist.d_res_low 55.1000 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1955 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2648 1.391 2.037 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 231 5.354 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 84 37.794 24.881 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 356 15.114 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 8 15.967 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 288 0.072 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1421 0.004 0.021 ? ? # _refine_ls_shell.d_res_high 2.3000 _refine_ls_shell.d_res_low 2.3600 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.7400 _refine_ls_shell.number_reflns_R_work 823 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2100 _refine_ls_shell.R_factor_R_free 0.2560 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 866 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4O7V _struct.title 'SAICAR synthetase (Type-2) in complex with ADP and UDP/UMP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O7V _struct_keywords.text 'SAICAR synthetase-like fold, Ligase, ATP binding, CAIR binding, Aspartate binding' _struct_keywords.pdbx_keywords LIGASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 44 ? HIS A 63 ? GLY A 44 HIS A 63 1 ? 20 HELX_P HELX_P2 2 ALA A 97 ? ARG A 103 ? ALA A 97 ARG A 103 5 ? 7 HELX_P HELX_P3 3 ASN A 132 ? LEU A 139 ? ASN A 132 LEU A 139 1 ? 8 HELX_P HELX_P4 4 SER A 142 ? LYS A 166 ? SER A 142 LYS A 166 1 ? 25 HELX_P HELX_P5 5 LYS A 210 ? PHE A 215 ? LYS A 210 PHE A 215 1 ? 6 HELX_P HELX_P6 6 ASP A 219 ? GLY A 233 ? ASP A 219 GLY A 233 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 13 ? PRO A 17 ? LYS A 13 PRO A 17 A 2 LYS A 22 ? PHE A 27 ? LYS A 22 PHE A 27 A 3 ARG A 77 ? GLU A 81 ? ARG A 77 GLU A 81 A 4 PHE A 69 ? VAL A 72 ? PHE A 69 VAL A 72 B 1 ASP A 30 ? ALA A 33 ? ASP A 30 ALA A 33 B 2 LYS A 38 ? ARG A 41 ? LYS A 38 ARG A 41 C 1 ASP A 84 ? MET A 85 ? ASP A 84 MET A 85 C 2 PHE A 178 ? LYS A 180 ? PHE A 178 LYS A 180 C 3 ILE A 186 ? LEU A 188 ? ILE A 186 LEU A 188 D 1 MET A 130 ? ILE A 131 ? MET A 130 ILE A 131 D 2 GLU A 111 ? TYR A 121 ? GLU A 111 TYR A 121 D 3 LEU A 88 ? VAL A 95 ? LEU A 88 VAL A 95 D 4 ILE A 169 ? LEU A 176 ? ILE A 169 LEU A 176 D 5 CYS A 197 ? ASP A 201 ? CYS A 197 ASP A 201 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 14 ? N LYS A 14 O GLU A 26 ? O GLU A 26 A 2 3 N MET A 25 ? N MET A 25 O LEU A 78 ? O LEU A 78 A 3 4 O ILE A 79 ? O ILE A 79 N GLY A 71 ? N GLY A 71 B 1 2 N ALA A 31 ? N ALA A 31 O ALA A 40 ? O ALA A 40 C 1 2 N ASP A 84 ? N ASP A 84 O LYS A 180 ? O LYS A 180 C 2 3 N GLY A 179 ? N GLY A 179 O VAL A 187 ? O VAL A 187 D 1 2 O ILE A 131 ? O ILE A 131 N LEU A 119 ? N LEU A 119 D 2 3 O GLU A 118 ? O GLU A 118 N VAL A 91 ? N VAL A 91 D 3 4 N VAL A 90 ? N VAL A 90 O LEU A 176 ? O LEU A 176 D 4 5 N ILE A 170 ? N ILE A 170 O TRP A 200 ? O TRP A 200 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A UDP 301 ? 15 'BINDING SITE FOR RESIDUE UDP A 301' AC2 Software A ADP 302 ? 11 'BINDING SITE FOR RESIDUE ADP A 302' AC3 Software A U5P 303 ? 12 'BINDING SITE FOR RESIDUE U5P A 303' AC4 Software A ACT 304 ? 3 'BINDING SITE FOR RESIDUE ACT A 304' AC5 Software A PO4 305 ? 7 'BINDING SITE FOR RESIDUE PO4 A 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 GLU A 89 ? GLU A 89 . ? 1_555 ? 2 AC1 15 ARG A 93 ? ARG A 93 . ? 1_555 ? 3 AC1 15 GLY A 98 ? GLY A 98 . ? 1_555 ? 4 AC1 15 SER A 99 ? SER A 99 . ? 1_555 ? 5 AC1 15 ASP A 173 ? ASP A 173 . ? 1_555 ? 6 AC1 15 LYS A 175 ? LYS A 175 . ? 1_555 ? 7 AC1 15 ASP A 195 ? ASP A 195 . ? 1_555 ? 8 AC1 15 THR A 196 ? THR A 196 . ? 1_555 ? 9 AC1 15 CYS A 197 ? CYS A 197 . ? 1_555 ? 10 AC1 15 ARG A 198 ? ARG A 198 . ? 1_555 ? 11 AC1 15 ARG A 214 ? ARG A 214 . ? 1_555 ? 12 AC1 15 PO4 F . ? PO4 A 305 . ? 1_555 ? 13 AC1 15 HOH G . ? HOH A 443 . ? 1_555 ? 14 AC1 15 HOH G . ? HOH A 449 . ? 1_555 ? 15 AC1 15 HOH G . ? HOH A 481 . ? 1_555 ? 16 AC2 11 LYS A 13 ? LYS A 13 . ? 1_555 ? 17 AC2 11 MET A 15 ? MET A 15 . ? 1_555 ? 18 AC2 11 HIS A 68 ? HIS A 68 . ? 1_555 ? 19 AC2 11 GLU A 81 ? GLU A 81 . ? 1_555 ? 20 AC2 11 LEU A 83 ? LEU A 83 . ? 1_555 ? 21 AC2 11 MET A 85 ? MET A 85 . ? 1_555 ? 22 AC2 11 LYS A 122 ? LYS A 122 . ? 1_555 ? 23 AC2 11 LYS A 175 ? LYS A 175 . ? 1_555 ? 24 AC2 11 GLU A 177 ? GLU A 177 . ? 1_555 ? 25 AC2 11 ALA A 189 ? ALA A 189 . ? 1_555 ? 26 AC2 11 ASP A 190 ? ASP A 190 . ? 1_555 ? 27 AC3 12 GLU A 89 ? GLU A 89 . ? 1_555 ? 28 AC3 12 ARG A 93 ? ARG A 93 . ? 1_555 ? 29 AC3 12 GLY A 98 ? GLY A 98 . ? 1_555 ? 30 AC3 12 SER A 99 ? SER A 99 . ? 1_555 ? 31 AC3 12 ASP A 173 ? ASP A 173 . ? 1_555 ? 32 AC3 12 LYS A 175 ? LYS A 175 . ? 1_555 ? 33 AC3 12 ASP A 195 ? ASP A 195 . ? 1_555 ? 34 AC3 12 THR A 196 ? THR A 196 . ? 1_555 ? 35 AC3 12 CYS A 197 ? CYS A 197 . ? 1_555 ? 36 AC3 12 ARG A 198 ? ARG A 198 . ? 1_555 ? 37 AC3 12 ARG A 214 ? ARG A 214 . ? 1_555 ? 38 AC3 12 HOH G . ? HOH A 443 . ? 1_555 ? 39 AC4 3 ARG A 103 ? ARG A 103 . ? 1_555 ? 40 AC4 3 ARG A 103 ? ARG A 103 . ? 3_654 ? 41 AC4 3 MET A 130 ? MET A 130 . ? 1_555 ? 42 AC5 7 THR A 32 ? THR A 32 . ? 1_555 ? 43 AC5 7 ALA A 33 ? ALA A 33 . ? 1_555 ? 44 AC5 7 PHE A 34 ? PHE A 34 . ? 1_555 ? 45 AC5 7 LYS A 210 ? LYS A 210 . ? 1_555 ? 46 AC5 7 ARG A 214 ? ARG A 214 . ? 1_555 ? 47 AC5 7 UDP B . ? UDP A 301 . ? 1_555 ? 48 AC5 7 HOH G . ? HOH A 449 . ? 1_555 ? # _atom_sites.entry_id 4O7V _atom_sites.fract_transf_matrix[1][1] 0.022645 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006447 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012771 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 LEU 4 4 ? ? ? A . n A 1 5 MET 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 VAL 7 7 ? ? ? A . n A 1 8 TYR 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 GLY 10 10 ? ? ? A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 THR 67 67 67 THR THR A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 MET 85 85 85 MET MET A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 HIS 127 127 127 HIS HIS A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 SER 142 142 142 SER SER A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 LYS 155 155 155 LYS LYS A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLU 158 158 158 GLU GLU A . n A 1 159 ILE 159 159 159 ILE ILE A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 LYS 167 167 167 LYS LYS A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 GLU 177 177 177 GLU GLU A . n A 1 178 PHE 178 178 178 PHE PHE A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 GLY 184 184 184 GLY GLY A . n A 1 185 ASP 185 185 185 ASP ASP A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 ILE 192 192 192 ILE ILE A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 PRO 194 194 194 PRO PRO A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 CYS 197 197 197 CYS CYS A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 PHE 199 199 199 PHE PHE A . n A 1 200 TRP 200 200 200 TRP TRP A . n A 1 201 ASP 201 201 201 ASP ASP A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 THR 204 204 204 THR THR A . n A 1 205 LYS 205 205 205 LYS LYS A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 ASP 209 209 209 ASP ASP A . n A 1 210 LYS 210 210 210 LYS LYS A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 PHE 213 213 213 PHE PHE A . n A 1 214 ARG 214 214 214 ARG ARG A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 ASP 216 216 216 ASP ASP A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 ILE 221 221 221 ILE ILE A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 TYR 224 224 224 TYR TYR A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 ILE 227 227 227 ILE ILE A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 GLU 229 229 229 GLU GLU A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 ILE 231 231 231 ILE ILE A . n A 1 232 THR 232 232 232 THR THR A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 LYS 235 235 235 LYS LYS A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 GLU 237 237 237 GLU GLU A . n A 1 238 PHE 238 238 238 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP 1 301 420 UDP UDP A . C 3 ADP 1 302 422 ADP ADP A . D 4 U5P 1 303 430 U5P U5P A . E 5 ACT 1 304 502 ACT ACT A . F 6 PO4 1 305 501 PO4 PO4 A . G 7 HOH 1 401 300 HOH HOH A . G 7 HOH 2 402 301 HOH HOH A . G 7 HOH 3 403 302 HOH HOH A . G 7 HOH 4 404 303 HOH HOH A . G 7 HOH 5 405 304 HOH HOH A . G 7 HOH 6 406 305 HOH HOH A . G 7 HOH 7 407 306 HOH HOH A . G 7 HOH 8 408 307 HOH HOH A . G 7 HOH 9 409 308 HOH HOH A . G 7 HOH 10 410 309 HOH HOH A . G 7 HOH 11 411 310 HOH HOH A . G 7 HOH 12 412 311 HOH HOH A . G 7 HOH 13 413 312 HOH HOH A . G 7 HOH 14 414 313 HOH HOH A . G 7 HOH 15 415 314 HOH HOH A . G 7 HOH 16 416 315 HOH HOH A . G 7 HOH 17 417 316 HOH HOH A . G 7 HOH 18 418 317 HOH HOH A . G 7 HOH 19 419 318 HOH HOH A . G 7 HOH 20 420 319 HOH HOH A . G 7 HOH 21 421 320 HOH HOH A . G 7 HOH 22 422 321 HOH HOH A . G 7 HOH 23 423 322 HOH HOH A . G 7 HOH 24 424 323 HOH HOH A . G 7 HOH 25 425 324 HOH HOH A . G 7 HOH 26 426 325 HOH HOH A . G 7 HOH 27 427 326 HOH HOH A . G 7 HOH 28 428 327 HOH HOH A . G 7 HOH 29 429 328 HOH HOH A . G 7 HOH 30 430 329 HOH HOH A . G 7 HOH 31 431 330 HOH HOH A . G 7 HOH 32 432 331 HOH HOH A . G 7 HOH 33 433 332 HOH HOH A . G 7 HOH 34 434 333 HOH HOH A . G 7 HOH 35 435 334 HOH HOH A . G 7 HOH 36 436 335 HOH HOH A . G 7 HOH 37 437 336 HOH HOH A . G 7 HOH 38 438 337 HOH HOH A . G 7 HOH 39 439 338 HOH HOH A . G 7 HOH 40 440 339 HOH HOH A . G 7 HOH 41 441 340 HOH HOH A . G 7 HOH 42 442 341 HOH HOH A . G 7 HOH 43 443 342 HOH HOH A . G 7 HOH 44 444 343 HOH HOH A . G 7 HOH 45 445 344 HOH HOH A . G 7 HOH 46 446 345 HOH HOH A . G 7 HOH 47 447 346 HOH HOH A . G 7 HOH 48 448 347 HOH HOH A . G 7 HOH 49 449 348 HOH HOH A . G 7 HOH 50 450 349 HOH HOH A . G 7 HOH 51 451 350 HOH HOH A . G 7 HOH 52 452 351 HOH HOH A . G 7 HOH 53 453 352 HOH HOH A . G 7 HOH 54 454 353 HOH HOH A . G 7 HOH 55 455 354 HOH HOH A . G 7 HOH 56 456 355 HOH HOH A . G 7 HOH 57 457 356 HOH HOH A . G 7 HOH 58 458 357 HOH HOH A . G 7 HOH 59 459 358 HOH HOH A . G 7 HOH 60 460 359 HOH HOH A . G 7 HOH 61 461 360 HOH HOH A . G 7 HOH 62 462 361 HOH HOH A . G 7 HOH 63 463 362 HOH HOH A . G 7 HOH 64 464 363 HOH HOH A . G 7 HOH 65 465 364 HOH HOH A . G 7 HOH 66 466 365 HOH HOH A . G 7 HOH 67 467 366 HOH HOH A . G 7 HOH 68 468 367 HOH HOH A . G 7 HOH 69 469 368 HOH HOH A . G 7 HOH 70 470 369 HOH HOH A . G 7 HOH 71 471 370 HOH HOH A . G 7 HOH 72 472 371 HOH HOH A . G 7 HOH 73 473 372 HOH HOH A . G 7 HOH 74 474 373 HOH HOH A . G 7 HOH 75 475 374 HOH HOH A . G 7 HOH 76 476 375 HOH HOH A . G 7 HOH 77 477 376 HOH HOH A . G 7 HOH 78 478 377 HOH HOH A . G 7 HOH 79 479 378 HOH HOH A . G 7 HOH 80 480 379 HOH HOH A . G 7 HOH 81 481 380 HOH HOH A . G 7 HOH 82 482 381 HOH HOH A . G 7 HOH 83 483 382 HOH HOH A . G 7 HOH 84 484 383 HOH HOH A . G 7 HOH 85 485 384 HOH HOH A . G 7 HOH 86 486 385 HOH HOH A . G 7 HOH 87 487 386 HOH HOH A . G 7 HOH 88 488 387 HOH HOH A . G 7 HOH 89 489 388 HOH HOH A . G 7 HOH 90 490 389 HOH HOH A . G 7 HOH 91 491 390 HOH HOH A . G 7 HOH 92 492 391 HOH HOH A . G 7 HOH 93 493 392 HOH HOH A . G 7 HOH 94 494 393 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7000 ? 1 MORE -56 ? 1 'SSA (A^2)' 19250 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 44.1600000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -39.1500000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 421 ? G HOH . 2 1 A HOH 460 ? G HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-12-31 2 'Structure model' 1 1 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.897 _diffrn_reflns.pdbx_d_res_low 77.560 _diffrn_reflns.pdbx_number_obs 12230 _diffrn_reflns.pdbx_Rmerge_I_obs ? _diffrn_reflns.pdbx_Rsym_value 0.073 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 10.00 _diffrn_reflns.pdbx_redundancy 6.20 _diffrn_reflns.pdbx_percent_possible_obs 99.20 _diffrn_reflns.number 76276 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 2.30 2.42 ? ? 0.259 0.259 ? 5.90 98.50 1 2.42 2.57 ? ? 0.222 0.222 ? 6.10 98.60 1 2.57 2.75 ? ? 0.172 0.172 ? 6.30 98.90 1 2.75 2.97 ? ? 0.110 0.110 ? 6.40 99.10 1 2.97 3.25 ? ? 0.081 0.081 ? 6.40 99.40 1 3.25 3.64 ? ? 0.056 0.056 ? 6.40 99.60 1 3.64 4.20 ? ? 0.045 0.045 ? 6.40 99.70 1 4.20 5.14 ? ? 0.039 0.039 ? 6.30 99.80 1 5.14 7.27 ? ? 0.043 0.043 ? 6.20 99.80 1 7.27 55.10 ? ? 0.023 0.023 ? 5.70 99.40 # _pdbx_phasing_MR.entry_id 4O7V _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 55.100 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 55.100 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.20 2011/05/18 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER 2.3.0 'Tue Oct 18 19:46:39 2011 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC 5.7.0029 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.14 'Dec. 10, 2013' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MAR345dtb . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 20 ? ? -84.64 39.53 2 1 ASP A 21 ? ? -151.69 -44.22 3 1 LYS A 122 ? ? -68.60 95.99 4 1 ALA A 189 ? ? -129.71 -153.57 5 1 ASP A 190 ? ? 43.86 -132.28 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 11 ? CG ? A LYS 11 CG 2 1 Y 1 A LYS 11 ? CD ? A LYS 11 CD 3 1 Y 1 A LYS 11 ? CE ? A LYS 11 CE 4 1 Y 1 A LYS 11 ? NZ ? A LYS 11 NZ 5 1 Y 1 A LYS 14 ? CG ? A LYS 14 CG 6 1 Y 1 A LYS 14 ? CD ? A LYS 14 CD 7 1 Y 1 A LYS 14 ? CE ? A LYS 14 CE 8 1 Y 1 A LYS 14 ? NZ ? A LYS 14 NZ 9 1 Y 1 A ILE 16 ? CB ? A ILE 16 CB 10 1 Y 1 A ILE 16 ? CG1 ? A ILE 16 CG1 11 1 Y 1 A ILE 16 ? CG2 ? A ILE 16 CG2 12 1 Y 1 A ILE 16 ? CD1 ? A ILE 16 CD1 13 1 Y 1 A ASP 20 ? CG ? A ASP 20 CG 14 1 Y 1 A ASP 20 ? OD1 ? A ASP 20 OD1 15 1 Y 1 A ASP 20 ? OD2 ? A ASP 20 OD2 16 1 Y 1 A LYS 102 ? CE ? A LYS 102 CE 17 1 Y 1 A LYS 102 ? NZ ? A LYS 102 NZ 18 1 Y 1 A LYS 182 ? CE ? A LYS 182 CE 19 1 Y 1 A LYS 182 ? NZ ? A LYS 182 NZ 20 1 Y 1 A GLU 234 ? OE1 ? A GLU 234 OE1 21 1 Y 1 A GLU 234 ? OE2 ? A GLU 234 OE2 22 1 Y 1 A LYS 235 ? CB ? A LYS 235 CB 23 1 Y 1 A LYS 235 ? CG ? A LYS 235 CG 24 1 Y 1 A LYS 235 ? CD ? A LYS 235 CD 25 1 Y 1 A LYS 235 ? CE ? A LYS 235 CE 26 1 Y 1 A LYS 235 ? NZ ? A LYS 235 NZ 27 1 Y 1 A GLU 237 ? CB ? A GLU 237 CB 28 1 Y 1 A GLU 237 ? CG ? A GLU 237 CG 29 1 Y 1 A GLU 237 ? CD ? A GLU 237 CD 30 1 Y 1 A GLU 237 ? OE1 ? A GLU 237 OE1 31 1 Y 1 A GLU 237 ? OE2 ? A GLU 237 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A LEU 4 ? A LEU 4 5 1 Y 1 A MET 5 ? A MET 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A VAL 7 ? A VAL 7 8 1 Y 1 A TYR 8 ? A TYR 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A GLY 10 ? A GLY 10 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ADP PB P N N 8 ADP O1B O N N 9 ADP O2B O N N 10 ADP O3B O N N 11 ADP PA P N S 12 ADP O1A O N N 13 ADP O2A O N N 14 ADP O3A O N N 15 ADP "O5'" O N N 16 ADP "C5'" C N N 17 ADP "C4'" C N R 18 ADP "O4'" O N N 19 ADP "C3'" C N S 20 ADP "O3'" O N N 21 ADP "C2'" C N R 22 ADP "O2'" O N N 23 ADP "C1'" C N R 24 ADP N9 N Y N 25 ADP C8 C Y N 26 ADP N7 N Y N 27 ADP C5 C Y N 28 ADP C6 C Y N 29 ADP N6 N N N 30 ADP N1 N Y N 31 ADP C2 C Y N 32 ADP N3 N Y N 33 ADP C4 C Y N 34 ADP HOB2 H N N 35 ADP HOB3 H N N 36 ADP HOA2 H N N 37 ADP "H5'1" H N N 38 ADP "H5'2" H N N 39 ADP "H4'" H N N 40 ADP "H3'" H N N 41 ADP "HO3'" H N N 42 ADP "H2'" H N N 43 ADP "HO2'" H N N 44 ADP "H1'" H N N 45 ADP H8 H N N 46 ADP HN61 H N N 47 ADP HN62 H N N 48 ADP H2 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 GLN N N N N 137 GLN CA C N S 138 GLN C C N N 139 GLN O O N N 140 GLN CB C N N 141 GLN CG C N N 142 GLN CD C N N 143 GLN OE1 O N N 144 GLN NE2 N N N 145 GLN OXT O N N 146 GLN H H N N 147 GLN H2 H N N 148 GLN HA H N N 149 GLN HB2 H N N 150 GLN HB3 H N N 151 GLN HG2 H N N 152 GLN HG3 H N N 153 GLN HE21 H N N 154 GLN HE22 H N N 155 GLN HXT H N N 156 GLU N N N N 157 GLU CA C N S 158 GLU C C N N 159 GLU O O N N 160 GLU CB C N N 161 GLU CG C N N 162 GLU CD C N N 163 GLU OE1 O N N 164 GLU OE2 O N N 165 GLU OXT O N N 166 GLU H H N N 167 GLU H2 H N N 168 GLU HA H N N 169 GLU HB2 H N N 170 GLU HB3 H N N 171 GLU HG2 H N N 172 GLU HG3 H N N 173 GLU HE2 H N N 174 GLU HXT H N N 175 GLY N N N N 176 GLY CA C N N 177 GLY C C N N 178 GLY O O N N 179 GLY OXT O N N 180 GLY H H N N 181 GLY H2 H N N 182 GLY HA2 H N N 183 GLY HA3 H N N 184 GLY HXT H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PO4 P P N N 322 PO4 O1 O N N 323 PO4 O2 O N N 324 PO4 O3 O N N 325 PO4 O4 O N N 326 PRO N N N N 327 PRO CA C N S 328 PRO C C N N 329 PRO O O N N 330 PRO CB C N N 331 PRO CG C N N 332 PRO CD C N N 333 PRO OXT O N N 334 PRO H H N N 335 PRO HA H N N 336 PRO HB2 H N N 337 PRO HB3 H N N 338 PRO HG2 H N N 339 PRO HG3 H N N 340 PRO HD2 H N N 341 PRO HD3 H N N 342 PRO HXT H N N 343 SER N N N N 344 SER CA C N S 345 SER C C N N 346 SER O O N N 347 SER CB C N N 348 SER OG O N N 349 SER OXT O N N 350 SER H H N N 351 SER H2 H N N 352 SER HA H N N 353 SER HB2 H N N 354 SER HB3 H N N 355 SER HG H N N 356 SER HXT H N N 357 THR N N N N 358 THR CA C N S 359 THR C C N N 360 THR O O N N 361 THR CB C N R 362 THR OG1 O N N 363 THR CG2 C N N 364 THR OXT O N N 365 THR H H N N 366 THR H2 H N N 367 THR HA H N N 368 THR HB H N N 369 THR HG1 H N N 370 THR HG21 H N N 371 THR HG22 H N N 372 THR HG23 H N N 373 THR HXT H N N 374 TRP N N N N 375 TRP CA C N S 376 TRP C C N N 377 TRP O O N N 378 TRP CB C N N 379 TRP CG C Y N 380 TRP CD1 C Y N 381 TRP CD2 C Y N 382 TRP NE1 N Y N 383 TRP CE2 C Y N 384 TRP CE3 C Y N 385 TRP CZ2 C Y N 386 TRP CZ3 C Y N 387 TRP CH2 C Y N 388 TRP OXT O N N 389 TRP H H N N 390 TRP H2 H N N 391 TRP HA H N N 392 TRP HB2 H N N 393 TRP HB3 H N N 394 TRP HD1 H N N 395 TRP HE1 H N N 396 TRP HE3 H N N 397 TRP HZ2 H N N 398 TRP HZ3 H N N 399 TRP HH2 H N N 400 TRP HXT H N N 401 TYR N N N N 402 TYR CA C N S 403 TYR C C N N 404 TYR O O N N 405 TYR CB C N N 406 TYR CG C Y N 407 TYR CD1 C Y N 408 TYR CD2 C Y N 409 TYR CE1 C Y N 410 TYR CE2 C Y N 411 TYR CZ C Y N 412 TYR OH O N N 413 TYR OXT O N N 414 TYR H H N N 415 TYR H2 H N N 416 TYR HA H N N 417 TYR HB2 H N N 418 TYR HB3 H N N 419 TYR HD1 H N N 420 TYR HD2 H N N 421 TYR HE1 H N N 422 TYR HE2 H N N 423 TYR HH H N N 424 TYR HXT H N N 425 U5P N1 N N N 426 U5P C2 C N N 427 U5P N3 N N N 428 U5P C4 C N N 429 U5P C5 C N N 430 U5P C6 C N N 431 U5P O2 O N N 432 U5P O4 O N N 433 U5P "C1'" C N R 434 U5P "C2'" C N R 435 U5P "O2'" O N N 436 U5P "C3'" C N S 437 U5P "C4'" C N R 438 U5P "O3'" O N N 439 U5P "O4'" O N N 440 U5P "C5'" C N N 441 U5P "O5'" O N N 442 U5P P P N N 443 U5P O1P O N N 444 U5P O2P O N N 445 U5P O3P O N N 446 U5P HN3 H N N 447 U5P H5 H N N 448 U5P H6 H N N 449 U5P "H1'" H N N 450 U5P "H2'" H N N 451 U5P "HO2'" H N N 452 U5P "H3'" H N N 453 U5P "H4'" H N N 454 U5P "HO3'" H N N 455 U5P "H5'1" H N N 456 U5P "H5'2" H N N 457 U5P HOP2 H N N 458 U5P HOP3 H N N 459 UDP N1 N N N 460 UDP C2 C N N 461 UDP N3 N N N 462 UDP C4 C N N 463 UDP C5 C N N 464 UDP C6 C N N 465 UDP O2 O N N 466 UDP O4 O N N 467 UDP "C1'" C N R 468 UDP "C2'" C N R 469 UDP "O2'" O N N 470 UDP "C3'" C N S 471 UDP "C4'" C N R 472 UDP "O4'" O N N 473 UDP "O3'" O N N 474 UDP "C5'" C N N 475 UDP "O5'" O N N 476 UDP PA P N N 477 UDP O1A O N N 478 UDP O2A O N N 479 UDP O3A O N N 480 UDP PB P N N 481 UDP O1B O N N 482 UDP O2B O N N 483 UDP O3B O N N 484 UDP HN3 H N N 485 UDP H5 H N N 486 UDP H6 H N N 487 UDP "H1'" H N N 488 UDP "H2'" H N N 489 UDP "HO2'" H N N 490 UDP "H3'" H N N 491 UDP "H4'" H N N 492 UDP "HO3'" H N N 493 UDP "H5'1" H N N 494 UDP "H5'2" H N N 495 UDP HOA2 H N N 496 UDP HOB2 H N N 497 UDP HOB3 H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ADP PB O1B doub N N 7 ADP PB O2B sing N N 8 ADP PB O3B sing N N 9 ADP PB O3A sing N N 10 ADP O2B HOB2 sing N N 11 ADP O3B HOB3 sing N N 12 ADP PA O1A doub N N 13 ADP PA O2A sing N N 14 ADP PA O3A sing N N 15 ADP PA "O5'" sing N N 16 ADP O2A HOA2 sing N N 17 ADP "O5'" "C5'" sing N N 18 ADP "C5'" "C4'" sing N N 19 ADP "C5'" "H5'1" sing N N 20 ADP "C5'" "H5'2" sing N N 21 ADP "C4'" "O4'" sing N N 22 ADP "C4'" "C3'" sing N N 23 ADP "C4'" "H4'" sing N N 24 ADP "O4'" "C1'" sing N N 25 ADP "C3'" "O3'" sing N N 26 ADP "C3'" "C2'" sing N N 27 ADP "C3'" "H3'" sing N N 28 ADP "O3'" "HO3'" sing N N 29 ADP "C2'" "O2'" sing N N 30 ADP "C2'" "C1'" sing N N 31 ADP "C2'" "H2'" sing N N 32 ADP "O2'" "HO2'" sing N N 33 ADP "C1'" N9 sing N N 34 ADP "C1'" "H1'" sing N N 35 ADP N9 C8 sing Y N 36 ADP N9 C4 sing Y N 37 ADP C8 N7 doub Y N 38 ADP C8 H8 sing N N 39 ADP N7 C5 sing Y N 40 ADP C5 C6 sing Y N 41 ADP C5 C4 doub Y N 42 ADP C6 N6 sing N N 43 ADP C6 N1 doub Y N 44 ADP N6 HN61 sing N N 45 ADP N6 HN62 sing N N 46 ADP N1 C2 sing Y N 47 ADP C2 N3 doub Y N 48 ADP C2 H2 sing N N 49 ADP N3 C4 sing Y N 50 ALA N CA sing N N 51 ALA N H sing N N 52 ALA N H2 sing N N 53 ALA CA C sing N N 54 ALA CA CB sing N N 55 ALA CA HA sing N N 56 ALA C O doub N N 57 ALA C OXT sing N N 58 ALA CB HB1 sing N N 59 ALA CB HB2 sing N N 60 ALA CB HB3 sing N N 61 ALA OXT HXT sing N N 62 ARG N CA sing N N 63 ARG N H sing N N 64 ARG N H2 sing N N 65 ARG CA C sing N N 66 ARG CA CB sing N N 67 ARG CA HA sing N N 68 ARG C O doub N N 69 ARG C OXT sing N N 70 ARG CB CG sing N N 71 ARG CB HB2 sing N N 72 ARG CB HB3 sing N N 73 ARG CG CD sing N N 74 ARG CG HG2 sing N N 75 ARG CG HG3 sing N N 76 ARG CD NE sing N N 77 ARG CD HD2 sing N N 78 ARG CD HD3 sing N N 79 ARG NE CZ sing N N 80 ARG NE HE sing N N 81 ARG CZ NH1 sing N N 82 ARG CZ NH2 doub N N 83 ARG NH1 HH11 sing N N 84 ARG NH1 HH12 sing N N 85 ARG NH2 HH21 sing N N 86 ARG NH2 HH22 sing N N 87 ARG OXT HXT sing N N 88 ASN N CA sing N N 89 ASN N H sing N N 90 ASN N H2 sing N N 91 ASN CA C sing N N 92 ASN CA CB sing N N 93 ASN CA HA sing N N 94 ASN C O doub N N 95 ASN C OXT sing N N 96 ASN CB CG sing N N 97 ASN CB HB2 sing N N 98 ASN CB HB3 sing N N 99 ASN CG OD1 doub N N 100 ASN CG ND2 sing N N 101 ASN ND2 HD21 sing N N 102 ASN ND2 HD22 sing N N 103 ASN OXT HXT sing N N 104 ASP N CA sing N N 105 ASP N H sing N N 106 ASP N H2 sing N N 107 ASP CA C sing N N 108 ASP CA CB sing N N 109 ASP CA HA sing N N 110 ASP C O doub N N 111 ASP C OXT sing N N 112 ASP CB CG sing N N 113 ASP CB HB2 sing N N 114 ASP CB HB3 sing N N 115 ASP CG OD1 doub N N 116 ASP CG OD2 sing N N 117 ASP OD2 HD2 sing N N 118 ASP OXT HXT sing N N 119 CYS N CA sing N N 120 CYS N H sing N N 121 CYS N H2 sing N N 122 CYS CA C sing N N 123 CYS CA CB sing N N 124 CYS CA HA sing N N 125 CYS C O doub N N 126 CYS C OXT sing N N 127 CYS CB SG sing N N 128 CYS CB HB2 sing N N 129 CYS CB HB3 sing N N 130 CYS SG HG sing N N 131 CYS OXT HXT sing N N 132 GLN N CA sing N N 133 GLN N H sing N N 134 GLN N H2 sing N N 135 GLN CA C sing N N 136 GLN CA CB sing N N 137 GLN CA HA sing N N 138 GLN C O doub N N 139 GLN C OXT sing N N 140 GLN CB CG sing N N 141 GLN CB HB2 sing N N 142 GLN CB HB3 sing N N 143 GLN CG CD sing N N 144 GLN CG HG2 sing N N 145 GLN CG HG3 sing N N 146 GLN CD OE1 doub N N 147 GLN CD NE2 sing N N 148 GLN NE2 HE21 sing N N 149 GLN NE2 HE22 sing N N 150 GLN OXT HXT sing N N 151 GLU N CA sing N N 152 GLU N H sing N N 153 GLU N H2 sing N N 154 GLU CA C sing N N 155 GLU CA CB sing N N 156 GLU CA HA sing N N 157 GLU C O doub N N 158 GLU C OXT sing N N 159 GLU CB CG sing N N 160 GLU CB HB2 sing N N 161 GLU CB HB3 sing N N 162 GLU CG CD sing N N 163 GLU CG HG2 sing N N 164 GLU CG HG3 sing N N 165 GLU CD OE1 doub N N 166 GLU CD OE2 sing N N 167 GLU OE2 HE2 sing N N 168 GLU OXT HXT sing N N 169 GLY N CA sing N N 170 GLY N H sing N N 171 GLY N H2 sing N N 172 GLY CA C sing N N 173 GLY CA HA2 sing N N 174 GLY CA HA3 sing N N 175 GLY C O doub N N 176 GLY C OXT sing N N 177 GLY OXT HXT sing N N 178 HIS N CA sing N N 179 HIS N H sing N N 180 HIS N H2 sing N N 181 HIS CA C sing N N 182 HIS CA CB sing N N 183 HIS CA HA sing N N 184 HIS C O doub N N 185 HIS C OXT sing N N 186 HIS CB CG sing N N 187 HIS CB HB2 sing N N 188 HIS CB HB3 sing N N 189 HIS CG ND1 sing Y N 190 HIS CG CD2 doub Y N 191 HIS ND1 CE1 doub Y N 192 HIS ND1 HD1 sing N N 193 HIS CD2 NE2 sing Y N 194 HIS CD2 HD2 sing N N 195 HIS CE1 NE2 sing Y N 196 HIS CE1 HE1 sing N N 197 HIS NE2 HE2 sing N N 198 HIS OXT HXT sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 ILE N CA sing N N 202 ILE N H sing N N 203 ILE N H2 sing N N 204 ILE CA C sing N N 205 ILE CA CB sing N N 206 ILE CA HA sing N N 207 ILE C O doub N N 208 ILE C OXT sing N N 209 ILE CB CG1 sing N N 210 ILE CB CG2 sing N N 211 ILE CB HB sing N N 212 ILE CG1 CD1 sing N N 213 ILE CG1 HG12 sing N N 214 ILE CG1 HG13 sing N N 215 ILE CG2 HG21 sing N N 216 ILE CG2 HG22 sing N N 217 ILE CG2 HG23 sing N N 218 ILE CD1 HD11 sing N N 219 ILE CD1 HD12 sing N N 220 ILE CD1 HD13 sing N N 221 ILE OXT HXT sing N N 222 LEU N CA sing N N 223 LEU N H sing N N 224 LEU N H2 sing N N 225 LEU CA C sing N N 226 LEU CA CB sing N N 227 LEU CA HA sing N N 228 LEU C O doub N N 229 LEU C OXT sing N N 230 LEU CB CG sing N N 231 LEU CB HB2 sing N N 232 LEU CB HB3 sing N N 233 LEU CG CD1 sing N N 234 LEU CG CD2 sing N N 235 LEU CG HG sing N N 236 LEU CD1 HD11 sing N N 237 LEU CD1 HD12 sing N N 238 LEU CD1 HD13 sing N N 239 LEU CD2 HD21 sing N N 240 LEU CD2 HD22 sing N N 241 LEU CD2 HD23 sing N N 242 LEU OXT HXT sing N N 243 LYS N CA sing N N 244 LYS N H sing N N 245 LYS N H2 sing N N 246 LYS CA C sing N N 247 LYS CA CB sing N N 248 LYS CA HA sing N N 249 LYS C O doub N N 250 LYS C OXT sing N N 251 LYS CB CG sing N N 252 LYS CB HB2 sing N N 253 LYS CB HB3 sing N N 254 LYS CG CD sing N N 255 LYS CG HG2 sing N N 256 LYS CG HG3 sing N N 257 LYS CD CE sing N N 258 LYS CD HD2 sing N N 259 LYS CD HD3 sing N N 260 LYS CE NZ sing N N 261 LYS CE HE2 sing N N 262 LYS CE HE3 sing N N 263 LYS NZ HZ1 sing N N 264 LYS NZ HZ2 sing N N 265 LYS NZ HZ3 sing N N 266 LYS OXT HXT sing N N 267 MET N CA sing N N 268 MET N H sing N N 269 MET N H2 sing N N 270 MET CA C sing N N 271 MET CA CB sing N N 272 MET CA HA sing N N 273 MET C O doub N N 274 MET C OXT sing N N 275 MET CB CG sing N N 276 MET CB HB2 sing N N 277 MET CB HB3 sing N N 278 MET CG SD sing N N 279 MET CG HG2 sing N N 280 MET CG HG3 sing N N 281 MET SD CE sing N N 282 MET CE HE1 sing N N 283 MET CE HE2 sing N N 284 MET CE HE3 sing N N 285 MET OXT HXT sing N N 286 PHE N CA sing N N 287 PHE N H sing N N 288 PHE N H2 sing N N 289 PHE CA C sing N N 290 PHE CA CB sing N N 291 PHE CA HA sing N N 292 PHE C O doub N N 293 PHE C OXT sing N N 294 PHE CB CG sing N N 295 PHE CB HB2 sing N N 296 PHE CB HB3 sing N N 297 PHE CG CD1 doub Y N 298 PHE CG CD2 sing Y N 299 PHE CD1 CE1 sing Y N 300 PHE CD1 HD1 sing N N 301 PHE CD2 CE2 doub Y N 302 PHE CD2 HD2 sing N N 303 PHE CE1 CZ doub Y N 304 PHE CE1 HE1 sing N N 305 PHE CE2 CZ sing Y N 306 PHE CE2 HE2 sing N N 307 PHE CZ HZ sing N N 308 PHE OXT HXT sing N N 309 PO4 P O1 doub N N 310 PO4 P O2 sing N N 311 PO4 P O3 sing N N 312 PO4 P O4 sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 THR N CA sing N N 344 THR N H sing N N 345 THR N H2 sing N N 346 THR CA C sing N N 347 THR CA CB sing N N 348 THR CA HA sing N N 349 THR C O doub N N 350 THR C OXT sing N N 351 THR CB OG1 sing N N 352 THR CB CG2 sing N N 353 THR CB HB sing N N 354 THR OG1 HG1 sing N N 355 THR CG2 HG21 sing N N 356 THR CG2 HG22 sing N N 357 THR CG2 HG23 sing N N 358 THR OXT HXT sing N N 359 TRP N CA sing N N 360 TRP N H sing N N 361 TRP N H2 sing N N 362 TRP CA C sing N N 363 TRP CA CB sing N N 364 TRP CA HA sing N N 365 TRP C O doub N N 366 TRP C OXT sing N N 367 TRP CB CG sing N N 368 TRP CB HB2 sing N N 369 TRP CB HB3 sing N N 370 TRP CG CD1 doub Y N 371 TRP CG CD2 sing Y N 372 TRP CD1 NE1 sing Y N 373 TRP CD1 HD1 sing N N 374 TRP CD2 CE2 doub Y N 375 TRP CD2 CE3 sing Y N 376 TRP NE1 CE2 sing Y N 377 TRP NE1 HE1 sing N N 378 TRP CE2 CZ2 sing Y N 379 TRP CE3 CZ3 doub Y N 380 TRP CE3 HE3 sing N N 381 TRP CZ2 CH2 doub Y N 382 TRP CZ2 HZ2 sing N N 383 TRP CZ3 CH2 sing Y N 384 TRP CZ3 HZ3 sing N N 385 TRP CH2 HH2 sing N N 386 TRP OXT HXT sing N N 387 TYR N CA sing N N 388 TYR N H sing N N 389 TYR N H2 sing N N 390 TYR CA C sing N N 391 TYR CA CB sing N N 392 TYR CA HA sing N N 393 TYR C O doub N N 394 TYR C OXT sing N N 395 TYR CB CG sing N N 396 TYR CB HB2 sing N N 397 TYR CB HB3 sing N N 398 TYR CG CD1 doub Y N 399 TYR CG CD2 sing Y N 400 TYR CD1 CE1 sing Y N 401 TYR CD1 HD1 sing N N 402 TYR CD2 CE2 doub Y N 403 TYR CD2 HD2 sing N N 404 TYR CE1 CZ doub Y N 405 TYR CE1 HE1 sing N N 406 TYR CE2 CZ sing Y N 407 TYR CE2 HE2 sing N N 408 TYR CZ OH sing N N 409 TYR OH HH sing N N 410 TYR OXT HXT sing N N 411 U5P N1 C2 sing N N 412 U5P N1 C6 sing N N 413 U5P N1 "C1'" sing N N 414 U5P C2 N3 sing N N 415 U5P C2 O2 doub N N 416 U5P N3 C4 sing N N 417 U5P N3 HN3 sing N N 418 U5P C4 C5 sing N N 419 U5P C4 O4 doub N N 420 U5P C5 C6 doub N N 421 U5P C5 H5 sing N N 422 U5P C6 H6 sing N N 423 U5P "C1'" "C2'" sing N N 424 U5P "C1'" "O4'" sing N N 425 U5P "C1'" "H1'" sing N N 426 U5P "C2'" "O2'" sing N N 427 U5P "C2'" "C3'" sing N N 428 U5P "C2'" "H2'" sing N N 429 U5P "O2'" "HO2'" sing N N 430 U5P "C3'" "C4'" sing N N 431 U5P "C3'" "O3'" sing N N 432 U5P "C3'" "H3'" sing N N 433 U5P "C4'" "O4'" sing N N 434 U5P "C4'" "C5'" sing N N 435 U5P "C4'" "H4'" sing N N 436 U5P "O3'" "HO3'" sing N N 437 U5P "C5'" "O5'" sing N N 438 U5P "C5'" "H5'1" sing N N 439 U5P "C5'" "H5'2" sing N N 440 U5P "O5'" P sing N N 441 U5P P O1P doub N N 442 U5P P O2P sing N N 443 U5P P O3P sing N N 444 U5P O2P HOP2 sing N N 445 U5P O3P HOP3 sing N N 446 UDP N1 C2 sing N N 447 UDP N1 C6 sing N N 448 UDP N1 "C1'" sing N N 449 UDP C2 N3 sing N N 450 UDP C2 O2 doub N N 451 UDP N3 C4 sing N N 452 UDP N3 HN3 sing N N 453 UDP C4 C5 sing N N 454 UDP C4 O4 doub N N 455 UDP C5 C6 doub N N 456 UDP C5 H5 sing N N 457 UDP C6 H6 sing N N 458 UDP "C1'" "C2'" sing N N 459 UDP "C1'" "O4'" sing N N 460 UDP "C1'" "H1'" sing N N 461 UDP "C2'" "O2'" sing N N 462 UDP "C2'" "C3'" sing N N 463 UDP "C2'" "H2'" sing N N 464 UDP "O2'" "HO2'" sing N N 465 UDP "C3'" "C4'" sing N N 466 UDP "C3'" "O3'" sing N N 467 UDP "C3'" "H3'" sing N N 468 UDP "C4'" "O4'" sing N N 469 UDP "C4'" "C5'" sing N N 470 UDP "C4'" "H4'" sing N N 471 UDP "O3'" "HO3'" sing N N 472 UDP "C5'" "O5'" sing N N 473 UDP "C5'" "H5'1" sing N N 474 UDP "C5'" "H5'2" sing N N 475 UDP "O5'" PA sing N N 476 UDP PA O1A doub N N 477 UDP PA O2A sing N N 478 UDP PA O3A sing N N 479 UDP O2A HOA2 sing N N 480 UDP O3A PB sing N N 481 UDP PB O1B doub N N 482 UDP PB O2B sing N N 483 UDP PB O3B sing N N 484 UDP O2B HOB2 sing N N 485 UDP O3B HOB3 sing N N 486 VAL N CA sing N N 487 VAL N H sing N N 488 VAL N H2 sing N N 489 VAL CA C sing N N 490 VAL CA CB sing N N 491 VAL CA HA sing N N 492 VAL C O doub N N 493 VAL C OXT sing N N 494 VAL CB CG1 sing N N 495 VAL CB CG2 sing N N 496 VAL CB HB sing N N 497 VAL CG1 HG11 sing N N 498 VAL CG1 HG12 sing N N 499 VAL CG1 HG13 sing N N 500 VAL CG2 HG21 sing N N 501 VAL CG2 HG22 sing N N 502 VAL CG2 HG23 sing N N 503 VAL OXT HXT sing N N 504 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "URIDINE-5'-DIPHOSPHATE" UDP 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 "URIDINE-5'-MONOPHOSPHATE" U5P 5 'ACETATE ION' ACT 6 'PHOSPHATE ION' PO4 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3U55 _pdbx_initial_refinement_model.details 'PDB ENTRY 3U55' #