HEADER OXIDOREDUCTASE 26-DEC-13 4O8A TITLE FIRST STRUCTURE OF A PROLINE UTILIZATION A PROLINE DEHYDROGENASE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN PUTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-669; COMPND 5 SYNONYM: PROLINE DEHYDROGENASE, PROLINE OXIDASE, DELTA-1-PYRROLINE-5- COMPND 6 CARBOXYLATE DEHYDROGENASE, P5C DEHYDROGENASE, L-GLUTAMATE GAMMA- COMPND 7 SEMIALDEHYDE DEHYDROGENASE; COMPND 8 EC: 1.5.99.8, 1.2.1.88; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B1014, JW0999, POAA, PUTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS FLAVOENZYME, PROLINE DEHYDROGENASE, PUTA, PROLINE UTILIZATION A, KEYWDS 2 ALDEHYDE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER REVDAT 2 28-FEB-24 4O8A 1 REMARK SEQADV REVDAT 1 15-JAN-14 4O8A 0 SPRSDE 15-JAN-14 4O8A 1K87 JRNL AUTH Y.H.LEE,S.NADARAIA,D.GU,D.F.BECKER,J.J.TANNER JRNL TITL STRUCTURE OF THE PROLINE DEHYDROGENASE DOMAIN OF THE JRNL TITL 2 MULTIFUNCTIONAL PUTA FLAVOPROTEIN. JRNL REF NAT.STRUCT.BIOL. V. 10 109 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12514740 JRNL DOI 10.1038/NSB885 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.H.LEE,S.NADARAIA,D.GU,D.F.BECKER,J.J.TANNER REMARK 1 TITL STRUCTURE OF THE PROLINE DEHYDROGENASE DOMAIN OF THE REMARK 1 TITL 2 MULTIFUNCTIONAL PUTA FLAVOPROTEIN. REMARK 1 REF NAT.STRUCT.BIOL. V. 10 109 2003 REMARK 1 REFN ISSN 1072-8368 REMARK 1 PMID 12514740 REMARK 1 DOI 10.1038/NSB885 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 50196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 5047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4898 - 6.1938 0.98 1600 191 0.2341 0.2466 REMARK 3 2 6.1938 - 4.9245 1.00 1558 185 0.1944 0.2022 REMARK 3 3 4.9245 - 4.3044 1.00 1560 151 0.1466 0.1647 REMARK 3 4 4.3044 - 3.9119 1.00 1565 163 0.1494 0.1935 REMARK 3 5 3.9119 - 3.6321 1.00 1540 166 0.1745 0.2057 REMARK 3 6 3.6321 - 3.4184 1.00 1543 163 0.1750 0.2054 REMARK 3 7 3.4184 - 3.2474 1.00 1509 185 0.1965 0.2183 REMARK 3 8 3.2474 - 3.1062 1.00 1546 155 0.1880 0.2028 REMARK 3 9 3.1062 - 2.9868 1.00 1503 178 0.1988 0.2281 REMARK 3 10 2.9868 - 2.8838 1.00 1548 151 0.1924 0.2428 REMARK 3 11 2.8838 - 2.7937 1.00 1501 177 0.1881 0.2222 REMARK 3 12 2.7937 - 2.7139 1.00 1538 154 0.1735 0.2304 REMARK 3 13 2.7139 - 2.6425 1.00 1501 173 0.1719 0.2106 REMARK 3 14 2.6425 - 2.5781 1.00 1508 178 0.1680 0.2027 REMARK 3 15 2.5781 - 2.5195 1.00 1507 149 0.1704 0.2130 REMARK 3 16 2.5195 - 2.4660 0.99 1484 182 0.1835 0.2225 REMARK 3 17 2.4660 - 2.4166 0.99 1490 176 0.1760 0.2185 REMARK 3 18 2.4166 - 2.3711 0.99 1502 167 0.1748 0.2252 REMARK 3 19 2.3711 - 2.3287 0.98 1473 161 0.1765 0.2382 REMARK 3 20 2.3287 - 2.2893 0.99 1475 170 0.1748 0.2142 REMARK 3 21 2.2893 - 2.2524 0.98 1467 178 0.1857 0.2292 REMARK 3 22 2.2524 - 2.2177 0.99 1492 168 0.2025 0.2421 REMARK 3 23 2.2177 - 2.1851 0.98 1452 173 0.1938 0.2263 REMARK 3 24 2.1851 - 2.1544 0.99 1492 136 0.2103 0.2711 REMARK 3 25 2.1544 - 2.1253 0.98 1488 172 0.2111 0.2913 REMARK 3 26 2.1253 - 2.0977 0.98 1469 168 0.2234 0.2676 REMARK 3 27 2.0977 - 2.0715 0.98 1438 166 0.2321 0.2556 REMARK 3 28 2.0715 - 2.0465 0.98 1508 180 0.2421 0.2919 REMARK 3 29 2.0465 - 2.0227 0.98 1449 153 0.2401 0.2950 REMARK 3 30 2.0227 - 2.0000 0.97 1443 178 0.2621 0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3695 REMARK 3 ANGLE : 1.071 5015 REMARK 3 CHIRALITY : 0.071 563 REMARK 3 PLANARITY : 0.004 646 REMARK 3 DIHEDRAL : 16.265 1413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 88:142 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1568 40.1538 50.5698 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.2853 REMARK 3 T33: 0.2433 T12: -0.0155 REMARK 3 T13: -0.0247 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.9380 L22: 1.9643 REMARK 3 L33: 2.6301 L12: -0.5815 REMARK 3 L13: -0.0416 L23: 0.2452 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.2028 S13: -0.2369 REMARK 3 S21: -0.1158 S22: -0.0187 S23: 0.1850 REMARK 3 S31: 0.1328 S32: -0.2622 S33: -0.0609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 143:184 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0204 80.9713 29.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.9187 T22: 0.5930 REMARK 3 T33: 0.4778 T12: -0.0449 REMARK 3 T13: -0.1456 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 1.6761 L22: 0.7814 REMARK 3 L33: 1.8641 L12: -0.2125 REMARK 3 L13: -0.1756 L23: -0.0560 REMARK 3 S TENSOR REMARK 3 S11: 0.2230 S12: 0.4108 S13: -0.2207 REMARK 3 S21: -0.8544 S22: -0.1051 S23: 0.3557 REMARK 3 S31: 0.4362 S32: -0.4945 S33: -0.1173 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 243:610 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5277 46.1523 53.0375 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.1416 REMARK 3 T33: 0.1745 T12: -0.0213 REMARK 3 T13: 0.0237 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.9411 L22: 1.0666 REMARK 3 L33: 2.9163 L12: -0.1490 REMARK 3 L13: -0.6813 L23: 0.4816 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: 0.0819 S13: 0.0232 REMARK 3 S21: -0.1715 S22: 0.0893 S23: -0.1246 REMARK 3 S31: -0.1862 S32: 0.3413 S33: -0.0880 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.005 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50208 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.487 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM CITRATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.92500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.92500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.21500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.92500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.31000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.21500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 140.43000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 VAL A 8 REMARK 465 LYS A 9 REMARK 465 LEU A 10 REMARK 465 ASP A 11 REMARK 465 ASP A 12 REMARK 465 ALA A 13 REMARK 465 THR A 14 REMARK 465 ARG A 15 REMARK 465 GLU A 16 REMARK 465 ARG A 17 REMARK 465 ILE A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 ARG A 24 REMARK 465 ILE A 25 REMARK 465 ASP A 26 REMARK 465 ARG A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 HIS A 30 REMARK 465 TRP A 31 REMARK 465 LEU A 32 REMARK 465 ILE A 33 REMARK 465 LYS A 34 REMARK 465 GLN A 35 REMARK 465 ALA A 36 REMARK 465 ILE A 37 REMARK 465 PHE A 38 REMARK 465 SER A 39 REMARK 465 TYR A 40 REMARK 465 LEU A 41 REMARK 465 GLU A 42 REMARK 465 GLN A 43 REMARK 465 LEU A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 THR A 49 REMARK 465 LEU A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 LEU A 53 REMARK 465 PRO A 54 REMARK 465 ALA A 55 REMARK 465 LEU A 56 REMARK 465 LEU A 57 REMARK 465 SER A 58 REMARK 465 GLY A 59 REMARK 465 ALA A 60 REMARK 465 ALA A 61 REMARK 465 ASN A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 PRO A 68 REMARK 465 THR A 69 REMARK 465 PRO A 70 REMARK 465 ALA A 71 REMARK 465 GLU A 72 REMARK 465 GLU A 73 REMARK 465 PRO A 74 REMARK 465 HIS A 75 REMARK 465 GLN A 76 REMARK 465 PRO A 77 REMARK 465 PHE A 78 REMARK 465 LEU A 79 REMARK 465 ASP A 80 REMARK 465 PHE A 81 REMARK 465 ALA A 82 REMARK 465 GLU A 83 REMARK 465 GLN A 84 REMARK 465 ILE A 85 REMARK 465 LEU A 86 REMARK 465 PRO A 87 REMARK 465 GLN A 153 REMARK 465 GLU A 154 REMARK 465 PHE A 155 REMARK 465 ILE A 185 REMARK 465 ARG A 186 REMARK 465 ASP A 187 REMARK 465 LYS A 188 REMARK 465 ILE A 189 REMARK 465 SER A 190 REMARK 465 ASN A 191 REMARK 465 GLY A 192 REMARK 465 ASN A 193 REMARK 465 TRP A 194 REMARK 465 GLN A 195 REMARK 465 SER A 196 REMARK 465 HIS A 197 REMARK 465 ILE A 198 REMARK 465 GLY A 199 REMARK 465 ARG A 200 REMARK 465 SER A 201 REMARK 465 PRO A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 PHE A 205 REMARK 465 VAL A 206 REMARK 465 ASN A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 THR A 210 REMARK 465 TRP A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 PHE A 215 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 LYS A 218 REMARK 465 LEU A 219 REMARK 465 VAL A 220 REMARK 465 SER A 221 REMARK 465 THR A 222 REMARK 465 HIS A 223 REMARK 465 ASN A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 LEU A 228 REMARK 465 SER A 229 REMARK 465 ARG A 230 REMARK 465 SER A 231 REMARK 465 LEU A 232 REMARK 465 ASN A 233 REMARK 465 ARG A 234 REMARK 465 ILE A 235 REMARK 465 ILE A 236 REMARK 465 GLY A 237 REMARK 465 LYS A 238 REMARK 465 SER A 239 REMARK 465 GLY A 240 REMARK 465 GLU A 241 REMARK 465 PRO A 242 REMARK 465 LEU A 611 REMARK 465 TYR A 612 REMARK 465 GLY A 613 REMARK 465 HIS A 614 REMARK 465 GLY A 615 REMARK 465 ARG A 616 REMARK 465 ASP A 617 REMARK 465 ASN A 618 REMARK 465 SER A 619 REMARK 465 ALA A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 ASP A 623 REMARK 465 LEU A 624 REMARK 465 ALA A 625 REMARK 465 ASN A 626 REMARK 465 GLU A 627 REMARK 465 HIS A 628 REMARK 465 ARG A 629 REMARK 465 LEU A 630 REMARK 465 ALA A 631 REMARK 465 SER A 632 REMARK 465 LEU A 633 REMARK 465 SER A 634 REMARK 465 SER A 635 REMARK 465 ALA A 636 REMARK 465 LEU A 637 REMARK 465 LEU A 638 REMARK 465 ASN A 639 REMARK 465 SER A 640 REMARK 465 ALA A 641 REMARK 465 LEU A 642 REMARK 465 GLN A 643 REMARK 465 LYS A 644 REMARK 465 TRP A 645 REMARK 465 GLN A 646 REMARK 465 ALA A 647 REMARK 465 LEU A 648 REMARK 465 PRO A 649 REMARK 465 MET A 650 REMARK 465 LEU A 651 REMARK 465 GLU A 652 REMARK 465 GLN A 653 REMARK 465 PRO A 654 REMARK 465 VAL A 655 REMARK 465 ALA A 656 REMARK 465 ALA A 657 REMARK 465 GLY A 658 REMARK 465 GLU A 659 REMARK 465 MET A 660 REMARK 465 SER A 661 REMARK 465 PRO A 662 REMARK 465 VAL A 663 REMARK 465 ILE A 664 REMARK 465 ASN A 665 REMARK 465 PRO A 666 REMARK 465 ALA A 667 REMARK 465 GLU A 668 REMARK 465 PRO A 669 REMARK 465 SER A 670 REMARK 465 SER A 671 REMARK 465 SER A 672 REMARK 465 VAL A 673 REMARK 465 ASP A 674 REMARK 465 LYS A 675 REMARK 465 LEU A 676 REMARK 465 ALA A 677 REMARK 465 ALA A 678 REMARK 465 ALA A 679 REMARK 465 LEU A 680 REMARK 465 GLU A 681 REMARK 465 HIS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 HIS A 685 REMARK 465 HIS A 686 REMARK 465 HIS A 687 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 118 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 LYS A 126 CE NZ REMARK 470 LYS A 134 CE NZ REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 LYS A 139 CE NZ REMARK 470 MET A 147 CG SD CE REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LEU A 151 CG CD1 CD2 REMARK 470 LEU A 152 CG CD1 CD2 REMARK 470 SER A 156 OG REMARK 470 LEU A 157 CG CD1 CD2 REMARK 470 SER A 159 OG REMARK 470 GLN A 160 CG CD OE1 NE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LEU A 243 CG CD1 CD2 REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 344 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 347 CG CD OE1 OE2 REMARK 470 LYS A 443 CG CD CE NZ REMARK 470 LEU A 450 CG CD1 CD2 REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 30.72 -97.82 REMARK 500 SER A 159 -71.77 -56.00 REMARK 500 GLU A 372 -133.55 -117.10 REMARK 500 THR A 486 148.68 -172.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2OP A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 2004 DBREF 4O8A A 1 669 UNP P09546 PUTA_ECOLI 1 669 SEQADV 4O8A SER A 670 UNP P09546 EXPRESSION TAG SEQADV 4O8A SER A 671 UNP P09546 EXPRESSION TAG SEQADV 4O8A SER A 672 UNP P09546 EXPRESSION TAG SEQADV 4O8A VAL A 673 UNP P09546 EXPRESSION TAG SEQADV 4O8A ASP A 674 UNP P09546 EXPRESSION TAG SEQADV 4O8A LYS A 675 UNP P09546 EXPRESSION TAG SEQADV 4O8A LEU A 676 UNP P09546 EXPRESSION TAG SEQADV 4O8A ALA A 677 UNP P09546 EXPRESSION TAG SEQADV 4O8A ALA A 678 UNP P09546 EXPRESSION TAG SEQADV 4O8A ALA A 679 UNP P09546 EXPRESSION TAG SEQADV 4O8A LEU A 680 UNP P09546 EXPRESSION TAG SEQADV 4O8A GLU A 681 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 682 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 683 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 684 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 685 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 686 UNP P09546 EXPRESSION TAG SEQADV 4O8A HIS A 687 UNP P09546 EXPRESSION TAG SEQRES 1 A 687 MET GLY THR THR THR MET GLY VAL LYS LEU ASP ASP ALA SEQRES 2 A 687 THR ARG GLU ARG ILE LYS SER ALA ALA THR ARG ILE ASP SEQRES 3 A 687 ARG THR PRO HIS TRP LEU ILE LYS GLN ALA ILE PHE SER SEQRES 4 A 687 TYR LEU GLU GLN LEU GLU ASN SER ASP THR LEU PRO GLU SEQRES 5 A 687 LEU PRO ALA LEU LEU SER GLY ALA ALA ASN GLU SER ASP SEQRES 6 A 687 GLU ALA PRO THR PRO ALA GLU GLU PRO HIS GLN PRO PHE SEQRES 7 A 687 LEU ASP PHE ALA GLU GLN ILE LEU PRO GLN SER VAL SER SEQRES 8 A 687 ARG ALA ALA ILE THR ALA ALA TYR ARG ARG PRO GLU THR SEQRES 9 A 687 GLU ALA VAL SER MET LEU LEU GLU GLN ALA ARG LEU PRO SEQRES 10 A 687 GLN PRO VAL ALA GLU GLN ALA HIS LYS LEU ALA TYR GLN SEQRES 11 A 687 LEU ALA ASP LYS LEU ARG ASN GLN LYS ASN ALA SER GLY SEQRES 12 A 687 ARG ALA GLY MET VAL GLN GLY LEU LEU GLN GLU PHE SER SEQRES 13 A 687 LEU SER SER GLN GLU GLY VAL ALA LEU MET CYS LEU ALA SEQRES 14 A 687 GLU ALA LEU LEU ARG ILE PRO ASP LYS ALA THR ARG ASP SEQRES 15 A 687 ALA LEU ILE ARG ASP LYS ILE SER ASN GLY ASN TRP GLN SEQRES 16 A 687 SER HIS ILE GLY ARG SER PRO SER LEU PHE VAL ASN ALA SEQRES 17 A 687 ALA THR TRP GLY LEU LEU PHE THR GLY LYS LEU VAL SER SEQRES 18 A 687 THR HIS ASN GLU ALA SER LEU SER ARG SER LEU ASN ARG SEQRES 19 A 687 ILE ILE GLY LYS SER GLY GLU PRO LEU ILE ARG LYS GLY SEQRES 20 A 687 VAL ASP MET ALA MET ARG LEU MET GLY GLU GLN PHE VAL SEQRES 21 A 687 THR GLY GLU THR ILE ALA GLU ALA LEU ALA ASN ALA ARG SEQRES 22 A 687 LYS LEU GLU GLU LYS GLY PHE ARG TYR SER TYR ASP MET SEQRES 23 A 687 LEU GLY GLU ALA ALA LEU THR ALA ALA ASP ALA GLN ALA SEQRES 24 A 687 TYR MET VAL SER TYR GLN GLN ALA ILE HIS ALA ILE GLY SEQRES 25 A 687 LYS ALA SER ASN GLY ARG GLY ILE TYR GLU GLY PRO GLY SEQRES 26 A 687 ILE SER ILE LYS LEU SER ALA LEU HIS PRO ARG TYR SER SEQRES 27 A 687 ARG ALA GLN TYR ASP ARG VAL MET GLU GLU LEU TYR PRO SEQRES 28 A 687 ARG LEU LYS SER LEU THR LEU LEU ALA ARG GLN TYR ASP SEQRES 29 A 687 ILE GLY ILE ASN ILE ASP ALA GLU GLU SER ASP ARG LEU SEQRES 30 A 687 GLU ILE SER LEU ASP LEU LEU GLU LYS LEU CYS PHE GLU SEQRES 31 A 687 PRO GLU LEU ALA GLY TRP ASN GLY ILE GLY PHE VAL ILE SEQRES 32 A 687 GLN ALA TYR GLN LYS ARG CYS PRO LEU VAL ILE ASP TYR SEQRES 33 A 687 LEU ILE ASP LEU ALA THR ARG SER ARG ARG ARG LEU MET SEQRES 34 A 687 ILE ARG LEU VAL LYS GLY ALA TYR TRP ASP SER GLU ILE SEQRES 35 A 687 LYS ARG ALA GLN MET ASP GLY LEU GLU GLY TYR PRO VAL SEQRES 36 A 687 TYR THR ARG LYS VAL TYR THR ASP VAL SER TYR LEU ALA SEQRES 37 A 687 CYS ALA LYS LYS LEU LEU ALA VAL PRO ASN LEU ILE TYR SEQRES 38 A 687 PRO GLN PHE ALA THR HIS ASN ALA HIS THR LEU ALA ALA SEQRES 39 A 687 ILE TYR GLN LEU ALA GLY GLN ASN TYR TYR PRO GLY GLN SEQRES 40 A 687 TYR GLU PHE GLN CYS LEU HIS GLY MET GLY GLU PRO LEU SEQRES 41 A 687 TYR GLU GLN VAL THR GLY LYS VAL ALA ASP GLY LYS LEU SEQRES 42 A 687 ASN ARG PRO CYS ARG ILE TYR ALA PRO VAL GLY THR HIS SEQRES 43 A 687 GLU THR LEU LEU ALA TYR LEU VAL ARG ARG LEU LEU GLU SEQRES 44 A 687 ASN GLY ALA ASN THR SER PHE VAL ASN ARG ILE ALA ASP SEQRES 45 A 687 THR SER LEU PRO LEU ASP GLU LEU VAL ALA ASP PRO VAL SEQRES 46 A 687 THR ALA VAL GLU LYS LEU ALA GLN GLN GLU GLY GLN THR SEQRES 47 A 687 GLY LEU PRO HIS PRO LYS ILE PRO LEU PRO ARG ASP LEU SEQRES 48 A 687 TYR GLY HIS GLY ARG ASP ASN SER ALA GLY LEU ASP LEU SEQRES 49 A 687 ALA ASN GLU HIS ARG LEU ALA SER LEU SER SER ALA LEU SEQRES 50 A 687 LEU ASN SER ALA LEU GLN LYS TRP GLN ALA LEU PRO MET SEQRES 51 A 687 LEU GLU GLN PRO VAL ALA ALA GLY GLU MET SER PRO VAL SEQRES 52 A 687 ILE ASN PRO ALA GLU PRO SER SER SER VAL ASP LYS LEU SEQRES 53 A 687 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET FAD A2001 53 HET 2OP A2002 6 HET PG4 A2003 13 HET PG4 A2004 13 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 2OP (2S)-2-HYDROXYPROPANOIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 2OP C3 H6 O3 FORMUL 4 PG4 2(C8 H18 O5) FORMUL 6 HOH *204(H2 O) HELIX 1 1 SER A 89 ALA A 98 1 10 HELIX 2 2 PRO A 102 ARG A 115 1 14 HELIX 3 3 PRO A 117 GLN A 138 1 22 HELIX 4 4 ASN A 140 LEU A 152 1 13 HELIX 5 5 SER A 158 ARG A 174 1 17 HELIX 6 6 ASP A 177 LEU A 184 1 8 HELIX 7 7 ILE A 244 GLU A 257 1 14 HELIX 8 8 GLN A 258 VAL A 260 5 3 HELIX 9 9 THR A 264 ASN A 271 1 8 HELIX 10 10 ALA A 272 GLU A 277 1 6 HELIX 11 11 THR A 293 ASN A 316 1 24 HELIX 12 12 ARG A 318 GLY A 323 1 6 HELIX 13 13 LYS A 329 LEU A 333 5 5 HELIX 14 14 ARG A 336 ALA A 340 5 5 HELIX 15 15 GLN A 341 ASP A 364 1 24 HELIX 16 16 GLU A 373 ASP A 375 5 3 HELIX 17 17 ARG A 376 CYS A 388 1 13 HELIX 18 18 PHE A 389 ALA A 394 5 6 HELIX 19 19 ARG A 409 ARG A 425 1 17 HELIX 20 20 TYR A 437 GLY A 449 1 13 HELIX 21 21 ARG A 458 ALA A 475 1 18 HELIX 22 22 ASN A 488 ALA A 499 1 12 HELIX 23 23 GLY A 517 GLU A 522 1 6 HELIX 24 24 LYS A 527 GLY A 531 5 5 HELIX 25 25 THR A 545 THR A 548 5 4 HELIX 26 26 LEU A 549 ALA A 562 1 14 HELIX 27 27 SER A 565 ILE A 570 1 6 HELIX 28 28 PRO A 576 VAL A 581 1 6 HELIX 29 29 ASP A 583 GLY A 596 1 14 SHEET 1 A 9 ARG A 281 MET A 286 0 SHEET 2 A 9 GLY A 325 ILE A 328 1 O SER A 327 N TYR A 284 SHEET 3 A 9 ILE A 367 ILE A 369 1 O ASN A 368 N ILE A 328 SHEET 4 A 9 ILE A 399 GLN A 404 1 O GLY A 400 N ILE A 367 SHEET 5 A 9 LEU A 428 VAL A 433 1 O ARG A 431 N ILE A 403 SHEET 6 A 9 ILE A 480 ALA A 485 1 O TYR A 481 N LEU A 428 SHEET 7 A 9 GLU A 509 LEU A 513 1 O GLU A 509 N PHE A 484 SHEET 8 A 9 CYS A 537 VAL A 543 1 O TYR A 540 N CYS A 512 SHEET 9 A 9 ARG A 281 MET A 286 1 N ARG A 281 O ILE A 539 SITE 1 AC1 34 ASP A 370 ALA A 371 VAL A 402 GLN A 404 SITE 2 AC1 34 TYR A 406 ARG A 431 VAL A 433 LYS A 434 SITE 3 AC1 34 GLY A 435 ALA A 436 TYR A 437 TRP A 438 SITE 4 AC1 34 TYR A 456 THR A 457 ARG A 458 LYS A 459 SITE 5 AC1 34 THR A 462 ALA A 485 THR A 486 HIS A 487 SITE 6 AC1 34 ASN A 488 CYS A 512 LEU A 513 TYR A 540 SITE 7 AC1 34 ARG A 556 GLU A 559 SER A 565 PHE A 566 SITE 8 AC1 34 2OP A2002 HOH A2106 HOH A2113 HOH A2138 SITE 9 AC1 34 HOH A2141 HOH A2227 SITE 1 AC2 9 LYS A 329 ASP A 370 ALA A 436 TYR A 540 SITE 2 AC2 9 TYR A 552 ARG A 555 ARG A 556 FAD A2001 SITE 3 AC2 9 HOH A2128 SITE 1 AC3 6 THR A 422 ARG A 425 ARG A 426 LEU A 474 SITE 2 AC3 6 ASN A 478 LEU A 498 SITE 1 AC4 2 MET A 255 ASN A 560 CRYST1 72.620 140.430 145.850 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013770 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007121 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006856 0.00000