HEADER LIGASE/RNA 27-DEC-13 4O8J TITLE CRYSTAL STRUCTURE OF RTCA, THE RNA 3'-TERMINAL PHOSPHATE CYCLASE FROM TITLE 2 PYROCOCCUS HORIKOSHII, IN COMPLEX WITH RACAAA3'PHOSPHATE AND ADENINE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA 3'-TERMINAL PHOSPHATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNA CYCLASE, RNA-3'-PHOSPHATE CYCLASE; COMPND 5 EC: 6.5.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA; COMPND 9 CHAIN: D, E; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3; SOURCE 5 GENE: PH1529, PHCV028, RTCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: SYNTHETIC RNA KEYWDS 3' RNA CYCLASE, RNA, LIGASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.K.DESAI,C.A.BINGMAN,G.N.PHILLIPS JR.,R.T.RAINES REVDAT 5 20-SEP-23 4O8J 1 REMARK REVDAT 4 23-SEP-20 4O8J 1 AUTHOR JRNL REMARK REVDAT 3 29-NOV-17 4O8J 1 REMARK REVDAT 2 01-OCT-14 4O8J 1 JRNL REVDAT 1 10-SEP-14 4O8J 0 JRNL AUTH K.K.DESAI,C.A.BINGMAN,C.L.CHENG,G.N.PHILLIPS JR.,R.T.RAINES JRNL TITL STRUCTURE OF RNA 3'-PHOSPHATE CYCLASE BOUND TO SUBSTRATE JRNL TITL 2 RNA. JRNL REF RNA V. 20 1560 2014 JRNL REFN ISSN 1355-8382 JRNL PMID 25161314 JRNL DOI 10.1261/RNA.045823.114 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 71772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1514 - 4.9150 1.00 5558 157 0.1825 0.1902 REMARK 3 2 4.9150 - 3.9018 1.00 5394 152 0.1343 0.1653 REMARK 3 3 3.9018 - 3.4088 1.00 5307 149 0.1438 0.1781 REMARK 3 4 3.4088 - 3.0972 1.00 5303 150 0.1488 0.2182 REMARK 3 5 3.0972 - 2.8752 1.00 5275 149 0.1523 0.1767 REMARK 3 6 2.8752 - 2.7057 1.00 5245 148 0.1545 0.1811 REMARK 3 7 2.7057 - 2.5702 1.00 5259 148 0.1515 0.2088 REMARK 3 8 2.5702 - 2.4584 1.00 5233 147 0.1585 0.2206 REMARK 3 9 2.4584 - 2.3637 1.00 5243 149 0.1593 0.2296 REMARK 3 10 2.3637 - 2.2822 1.00 5232 147 0.1700 0.2378 REMARK 3 11 2.2822 - 2.2108 0.99 5168 145 0.1849 0.2530 REMARK 3 12 2.2108 - 2.1476 0.94 4961 141 0.1853 0.2060 REMARK 3 13 2.1476 - 2.0911 0.80 4145 116 0.2072 0.2597 REMARK 3 14 2.0911 - 2.0401 0.47 2481 70 0.2091 0.2846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5674 REMARK 3 ANGLE : 1.363 7735 REMARK 3 CHIRALITY : 0.082 892 REMARK 3 PLANARITY : 0.007 948 REMARK 3 DIHEDRAL : 14.933 2150 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DUAL SILICON, K-B MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4O89 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M PROLINE, 0.1 M HEPES PH 7.5, 10% REMARK 280 PEG 3350, CRYOPROTECTED BY SUPPLEMENTING WITH 30% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.96050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.82400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.13050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.82400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.96050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.13050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A D 6 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A D 6 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A D 6 N1 C2 N3 C4 REMARK 470 A E 6 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A E 6 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A E 6 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 591 O HOH A 751 1.72 REMARK 500 OD1 ASP A 88 O HOH A 663 1.91 REMARK 500 O HOH B 680 O HOH B 749 2.18 REMARK 500 O HOH A 538 O HOH A 662 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 602 O HOH A 799 3655 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 CYS A 244 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 45 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 45 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 204 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 CYS B 244 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG B 339 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 339 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 A D 1 N1 - C6 - N6 ANGL. DEV. = 4.1 DEGREES REMARK 500 A E 5 N1 - C6 - N6 ANGL. DEV. = 5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 40.73 -94.02 REMARK 500 LYS A 78 -134.11 -103.53 REMARK 500 ARG A 110 -27.59 83.80 REMARK 500 LYS A 180 -91.30 -102.65 REMARK 500 SER A 229 -149.71 -156.32 REMARK 500 CYS A 244 -95.37 -112.05 REMARK 500 CYS A 244 -94.76 -112.05 REMARK 500 ILE A 322 -43.33 -134.85 REMARK 500 ASN B 38 35.98 -97.13 REMARK 500 LYS B 78 -140.94 -108.34 REMARK 500 THR B 91 -161.24 -106.49 REMARK 500 ARG B 110 -16.00 85.36 REMARK 500 LYS B 180 -90.36 -97.07 REMARK 500 SER B 229 -154.28 -157.79 REMARK 500 CYS B 244 -87.72 -121.86 REMARK 500 CYS B 244 -87.32 -121.72 REMARK 500 ILE B 322 -36.21 -131.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O89 RELATED DB: PDB DBREF 4O8J A 1 341 UNP O59198 RTCA_PYRHO 1 341 DBREF 4O8J B 1 341 UNP O59198 RTCA_PYRHO 1 341 DBREF 4O8J D 1 6 PDB 4O8J 4O8J 1 6 DBREF 4O8J E 1 6 PDB 4O8J 4O8J 1 6 SEQRES 1 A 341 MET ILE THR ILE ASP GLY SER TYR GLY GLU GLY GLY GLY SEQRES 2 A 341 GLN ILE LEU ARG THR SER VAL ALA LEU SER THR ILE THR SEQRES 3 A 341 GLY GLU PRO VAL ARG ILE VAL ASN ILE ARG ALA ASN ARG SEQRES 4 A 341 PRO ASN PRO GLY LEU ARG PRO GLN HIS LEU HIS ALA ILE SEQRES 5 A 341 LEU ALA LEU LYS HIS LEU ALA ASN ALA GLU VAL LYS GLY SEQRES 6 A 341 ALA HIS VAL GLY SER ARG GLU LEU VAL PHE ILE PRO LYS SEQRES 7 A 341 LYS LEU GLU ALA LYS GLU ILE SER ILE ASP ILE GLY THR SEQRES 8 A 341 ALA GLY SER ILE THR LEU VAL LEU GLN ALA LEU LEU PRO SEQRES 9 A 341 ALA MET VAL PHE ALA ARG GLU LYS VAL LYS PHE ARG ILE SEQRES 10 A 341 THR GLY GLY THR ASP VAL SER TRP SER PRO PRO VAL ASP SEQRES 11 A 341 TYR LEU SER ASN VAL THR LEU PHE ALA LEU GLU LYS ILE SEQRES 12 A 341 GLY ILE HIS GLY GLU ILE ARG VAL ILE ARG ARG GLY HIS SEQRES 13 A 341 TYR PRO LYS GLY GLY GLY ILE VAL GLU GLY TYR VAL GLU SEQRES 14 A 341 PRO TRP ASN GLU LYS ARG GLU LEU VAL ALA LYS GLU TYR SEQRES 15 A 341 SER ARG ILE ILE LYS ILE GLU GLY ILE SER HIS ALA THR SEQRES 16 A 341 ASN LEU PRO SER HIS VAL ALA GLU ARG GLN ALA ARG ALA SEQRES 17 A 341 ALA LYS ASP GLU LEU LEU GLN LEU LYS VAL PRO ILE GLU SEQRES 18 A 341 ILE ARG THR GLU ILE SER ARG SER ILE GLY PRO GLY SER SEQRES 19 A 341 GLY ILE VAL VAL TRP ALA GLU THR ASP CYS LEU ARG LEU SEQRES 20 A 341 GLY GLY ASP ALA LEU GLY LYS LYS GLY LYS PRO ALA GLU SEQRES 21 A 341 ILE VAL GLY LYS GLU ALA ALA GLN GLU LEU LEU ASP GLN SEQRES 22 A 341 LEU LYS PRO GLY HIS CYS VAL ASP LYS PHE LEU GLY ASP SEQRES 23 A 341 GLN LEU ILE PRO PHE LEU ALA PHE SER GLY GLY VAL ILE SEQRES 24 A 341 TRP VAL SER GLU ILE THR ASN HIS LEU LYS THR ASN ILE SEQRES 25 A 341 TRP VAL VAL GLU SER PHE LEU GLY ARG ILE PHE ASP VAL SEQRES 26 A 341 ASP GLY ASN VAL GLY GLU PRO GLY LYS ILE ARG VAL ILE SEQRES 27 A 341 ARG ARG VAL SEQRES 1 B 341 MET ILE THR ILE ASP GLY SER TYR GLY GLU GLY GLY GLY SEQRES 2 B 341 GLN ILE LEU ARG THR SER VAL ALA LEU SER THR ILE THR SEQRES 3 B 341 GLY GLU PRO VAL ARG ILE VAL ASN ILE ARG ALA ASN ARG SEQRES 4 B 341 PRO ASN PRO GLY LEU ARG PRO GLN HIS LEU HIS ALA ILE SEQRES 5 B 341 LEU ALA LEU LYS HIS LEU ALA ASN ALA GLU VAL LYS GLY SEQRES 6 B 341 ALA HIS VAL GLY SER ARG GLU LEU VAL PHE ILE PRO LYS SEQRES 7 B 341 LYS LEU GLU ALA LYS GLU ILE SER ILE ASP ILE GLY THR SEQRES 8 B 341 ALA GLY SER ILE THR LEU VAL LEU GLN ALA LEU LEU PRO SEQRES 9 B 341 ALA MET VAL PHE ALA ARG GLU LYS VAL LYS PHE ARG ILE SEQRES 10 B 341 THR GLY GLY THR ASP VAL SER TRP SER PRO PRO VAL ASP SEQRES 11 B 341 TYR LEU SER ASN VAL THR LEU PHE ALA LEU GLU LYS ILE SEQRES 12 B 341 GLY ILE HIS GLY GLU ILE ARG VAL ILE ARG ARG GLY HIS SEQRES 13 B 341 TYR PRO LYS GLY GLY GLY ILE VAL GLU GLY TYR VAL GLU SEQRES 14 B 341 PRO TRP ASN GLU LYS ARG GLU LEU VAL ALA LYS GLU TYR SEQRES 15 B 341 SER ARG ILE ILE LYS ILE GLU GLY ILE SER HIS ALA THR SEQRES 16 B 341 ASN LEU PRO SER HIS VAL ALA GLU ARG GLN ALA ARG ALA SEQRES 17 B 341 ALA LYS ASP GLU LEU LEU GLN LEU LYS VAL PRO ILE GLU SEQRES 18 B 341 ILE ARG THR GLU ILE SER ARG SER ILE GLY PRO GLY SER SEQRES 19 B 341 GLY ILE VAL VAL TRP ALA GLU THR ASP CYS LEU ARG LEU SEQRES 20 B 341 GLY GLY ASP ALA LEU GLY LYS LYS GLY LYS PRO ALA GLU SEQRES 21 B 341 ILE VAL GLY LYS GLU ALA ALA GLN GLU LEU LEU ASP GLN SEQRES 22 B 341 LEU LYS PRO GLY HIS CYS VAL ASP LYS PHE LEU GLY ASP SEQRES 23 B 341 GLN LEU ILE PRO PHE LEU ALA PHE SER GLY GLY VAL ILE SEQRES 24 B 341 TRP VAL SER GLU ILE THR ASN HIS LEU LYS THR ASN ILE SEQRES 25 B 341 TRP VAL VAL GLU SER PHE LEU GLY ARG ILE PHE ASP VAL SEQRES 26 B 341 ASP GLY ASN VAL GLY GLU PRO GLY LYS ILE ARG VAL ILE SEQRES 27 B 341 ARG ARG VAL SEQRES 1 D 6 A C A A A A SEQRES 1 E 6 A C A A A A HET ADN A 401 32 HET ADN B 401 31 HET EPE B 402 32 HETNAM ADN ADENOSINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 5 ADN 2(C10 H13 N5 O4) FORMUL 7 EPE C8 H18 N2 O4 S FORMUL 8 HOH *610(H2 O) HELIX 1 1 GLY A 12 GLY A 27 1 16 HELIX 2 2 ARG A 45 ASN A 60 1 16 HELIX 3 3 SER A 94 VAL A 107 1 14 HELIX 4 4 PRO A 128 VAL A 135 1 8 HELIX 5 5 VAL A 135 ILE A 143 1 9 HELIX 6 6 PRO A 198 LEU A 214 1 17 HELIX 7 7 GLN A 215 LYS A 217 5 3 HELIX 8 8 PRO A 258 LYS A 275 1 18 HELIX 9 9 ASP A 281 GLY A 296 1 16 HELIX 10 10 THR A 305 GLY A 320 1 16 HELIX 11 11 GLY B 12 GLY B 27 1 16 HELIX 12 12 ARG B 45 ASN B 60 1 16 HELIX 13 13 SER B 94 VAL B 107 1 14 HELIX 14 14 PRO B 128 VAL B 135 1 8 HELIX 15 15 VAL B 135 ILE B 143 1 9 HELIX 16 16 PRO B 198 LEU B 214 1 17 HELIX 17 17 GLN B 215 LYS B 217 5 3 HELIX 18 18 PRO B 258 LYS B 275 1 18 HELIX 19 19 ASP B 281 GLY B 296 1 16 HELIX 20 20 THR B 305 GLY B 320 1 16 SHEET 1 A 4 ILE A 2 ASP A 5 0 SHEET 2 A 4 VAL A 30 VAL A 33 1 O ARG A 31 N ILE A 4 SHEET 3 A 4 LEU A 73 ILE A 76 -1 O PHE A 75 N VAL A 30 SHEET 4 A 4 GLU A 62 LYS A 64 -1 N LYS A 64 O VAL A 74 SHEET 1 B 4 ILE A 85 ASP A 88 0 SHEET 2 B 4 VAL A 113 GLY A 119 1 O LYS A 114 N ILE A 85 SHEET 3 B 4 GLY A 162 VAL A 168 -1 O VAL A 164 N ILE A 117 SHEET 4 B 4 GLY A 147 ARG A 153 -1 N ARG A 150 O GLU A 165 SHEET 1 C 4 LEU A 177 ALA A 179 0 SHEET 2 C 4 GLY A 297 VAL A 301 1 O VAL A 298 N ALA A 179 SHEET 3 C 4 GLY A 333 VAL A 337 -1 O ILE A 335 N ILE A 299 SHEET 4 C 4 PHE A 323 ASP A 326 -1 N ASP A 326 O LYS A 334 SHEET 1 D 4 ILE A 220 SER A 227 0 SHEET 2 D 4 ILE A 185 THR A 195 1 N SER A 192 O ARG A 223 SHEET 3 D 4 GLY A 233 THR A 242 -1 O GLY A 233 N THR A 195 SHEET 4 D 4 ARG A 246 LEU A 252 -1 O GLY A 249 N VAL A 238 SHEET 1 E 4 ILE B 2 ASP B 5 0 SHEET 2 E 4 VAL B 30 VAL B 33 1 O ARG B 31 N ILE B 4 SHEET 3 E 4 LEU B 73 ILE B 76 -1 O PHE B 75 N VAL B 30 SHEET 4 E 4 GLU B 62 LYS B 64 -1 N GLU B 62 O ILE B 76 SHEET 1 F 4 ILE B 85 ASP B 88 0 SHEET 2 F 4 VAL B 113 GLY B 119 1 O LYS B 114 N ILE B 85 SHEET 3 F 4 GLY B 162 VAL B 168 -1 O VAL B 164 N ILE B 117 SHEET 4 F 4 GLY B 147 ARG B 153 -1 N ARG B 150 O GLU B 165 SHEET 1 G 4 LEU B 177 ALA B 179 0 SHEET 2 G 4 GLY B 297 VAL B 301 1 O VAL B 298 N ALA B 179 SHEET 3 G 4 GLY B 333 VAL B 337 -1 O ILE B 335 N ILE B 299 SHEET 4 G 4 PHE B 323 ASP B 326 -1 N ASP B 326 O LYS B 334 SHEET 1 H 4 ILE B 220 SER B 227 0 SHEET 2 H 4 ILE B 185 THR B 195 1 N SER B 192 O ARG B 223 SHEET 3 H 4 GLY B 233 THR B 242 -1 O GLY B 233 N THR B 195 SHEET 4 H 4 ARG B 246 LEU B 252 -1 O GLY B 249 N VAL B 238 SSBOND 1 CYS A 244 CYS A 279 1555 1555 2.06 SSBOND 2 CYS B 244 CYS B 279 1555 1555 2.06 CISPEP 1 TYR A 157 PRO A 158 0 7.56 CISPEP 2 TYR B 157 PRO B 158 0 7.70 SITE 1 AC1 11 GLN A 14 ARG A 17 LEU A 97 GLN A 100 SITE 2 AC1 11 PRO A 127 ASP A 250 PHE A 283 ASP A 286 SITE 3 AC1 11 GLN A 287 HIS A 307 A E 6 SITE 1 AC2 11 GLN B 14 LEU B 97 GLN B 100 SER B 126 SITE 2 AC2 11 PRO B 127 ASP B 250 PHE B 283 ASP B 286 SITE 3 AC2 11 GLN B 287 HIS B 307 HOH B 740 SITE 1 AC3 9 VAL B 63 LYS B 64 GLY B 65 ALA B 66 SITE 2 AC3 9 LYS B 180 GLU B 181 TRP B 300 HOH B 707 SITE 3 AC3 9 HOH B 711 CRYST1 83.921 110.261 127.648 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007834 0.00000