HEADER HYDROLASE 28-DEC-13 4O8P TITLE CRYSTAL STRUCTURE OF STHARAF62A, A GH62 FAMILY ALPHA-L- TITLE 2 ARABINOFURANOSIDASE FROM STREPTOMYCES THERMOVIOLACEUS, BOUND TO TITLE 3 XYLOTETRAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-ARABINOFURANOSIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES THERMOVIOLACEUS; SOURCE 3 ORGANISM_TAXID: 1952; SOURCE 4 GENE: STXIV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS 5-FOLD BETA-PROPELLER, GLYCOSYL HYDROLASE FAMILY 62, GH62, ALPHA-L- KEYWDS 2 ARABINOFURANOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,W.WANG,X.XU,H.CUI,E.MASTER,A.SAVCHENKO REVDAT 3 24-AUG-22 4O8P 1 JRNL HETSYN LINK REVDAT 2 29-JUL-20 4O8P 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 02-JUL-14 4O8P 0 JRNL AUTH W.WANG,G.MAI-GISONDI,P.J.STOGIOS,A.KAUR,X.XU,H.CUI, JRNL AUTH 2 O.TURUNEN,A.SAVCHENKO,E.R.MASTER JRNL TITL ELUCIDATION OF THE MOLECULAR BASIS FOR JRNL TITL 2 ARABINOXYLAN-DEBRANCHING ACTIVITY OF A THERMOSTABLE FAMILY JRNL TITL 3 GH62 ALPHA-L-ARABINOFURANOSIDASE FROM STREPTOMYCES JRNL TITL 4 THERMOVIOLACEUS. JRNL REF APPL.ENVIRON.MICROBIOL. V. 80 5317 2014 JRNL REFN ESSN 1098-5336 JRNL PMID 24951792 JRNL DOI 10.1128/AEM.00685-14 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1538) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 48371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6843 - 3.7481 0.98 3491 150 0.1213 0.1370 REMARK 3 2 3.7481 - 2.9768 0.99 3347 145 0.1172 0.1331 REMARK 3 3 2.9768 - 2.6011 1.00 3374 145 0.1337 0.1521 REMARK 3 4 2.6011 - 2.3635 1.00 3331 144 0.1256 0.1443 REMARK 3 5 2.3635 - 2.1942 1.00 3351 145 0.1234 0.1555 REMARK 3 6 2.1942 - 2.0649 1.00 3313 143 0.1233 0.1480 REMARK 3 7 2.0649 - 1.9616 1.00 3322 142 0.1246 0.1181 REMARK 3 8 1.9616 - 1.8762 1.00 3301 143 0.1289 0.1811 REMARK 3 9 1.8762 - 1.8040 1.00 3280 142 0.1441 0.1557 REMARK 3 10 1.8040 - 1.7418 1.00 3312 142 0.1437 0.2073 REMARK 3 11 1.7418 - 1.6873 1.00 3267 141 0.1535 0.1774 REMARK 3 12 1.6873 - 1.6391 1.00 3280 142 0.1542 0.2161 REMARK 3 13 1.6391 - 1.5960 1.00 3301 142 0.1663 0.1789 REMARK 3 14 1.5960 - 1.5570 0.94 3101 134 0.1723 0.1992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2605 REMARK 3 ANGLE : 1.808 3561 REMARK 3 CHIRALITY : 0.115 368 REMARK 3 PLANARITY : 0.010 463 REMARK 3 DIHEDRAL : 12.233 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 61:74) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6207 22.5412 157.5593 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1179 REMARK 3 T33: 0.0793 T12: -0.0032 REMARK 3 T13: -0.0393 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.9333 L22: 5.2462 REMARK 3 L33: 4.5642 L12: -2.9113 REMARK 3 L13: 0.8385 L23: -1.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.2656 S12: -0.2685 S13: 0.0952 REMARK 3 S21: 0.4679 S22: 0.2275 S23: -0.2844 REMARK 3 S31: 0.0855 S32: 0.2591 S33: -0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 75:129) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0857 31.5078 134.6343 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0636 REMARK 3 T33: 0.0311 T12: 0.0049 REMARK 3 T13: 0.0058 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.3767 L22: 2.1945 REMARK 3 L33: 1.9911 L12: 0.2102 REMARK 3 L13: 0.5593 L23: 0.2151 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.1329 S13: 0.0805 REMARK 3 S21: -0.1431 S22: -0.0072 S23: 0.0009 REMARK 3 S31: -0.1688 S32: -0.0173 S33: 0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 130:363) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0726 16.5116 139.8856 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.0713 REMARK 3 T33: 0.0524 T12: -0.0071 REMARK 3 T13: -0.0094 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.5295 L22: 0.5914 REMARK 3 L33: 0.9736 L12: -0.0947 REMARK 3 L13: -0.2215 L23: -0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0046 S13: -0.0208 REMARK 3 S21: -0.0225 S22: 0.0015 S23: 0.0077 REMARK 3 S31: 0.0604 S32: 0.0087 S33: 0.0087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.557 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 21.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14 MG/ML STHARAF62A, 0.2 M SODIUM REMARK 280 FORMATE AND 20% PEG 3350, 5 MG/ML XYLOTETRAOSE, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.24550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.65150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.31850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.65150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.24550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.31850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 HIS A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 ARG A 10 REMARK 465 PRO A 11 REMARK 465 LYS A 12 REMARK 465 ARG A 13 REMARK 465 LEU A 14 REMARK 465 PHE A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 MET A 27 REMARK 465 SER A 28 REMARK 465 THR A 29 REMARK 465 GLN A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 THR A 36 REMARK 465 VAL A 37 REMARK 465 VAL A 38 REMARK 465 PRO A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 VAL A 43 REMARK 465 GLN A 44 REMARK 465 GLY A 45 REMARK 465 THR A 46 REMARK 465 GLY A 47 REMARK 465 ARG A 48 REMARK 465 GLN A 49 REMARK 465 SER A 50 REMARK 465 GLN A 51 REMARK 465 LEU A 52 REMARK 465 THR A 53 REMARK 465 ASP A 54 REMARK 465 GLY A 55 REMARK 465 PHE A 56 REMARK 465 GLY A 57 REMARK 465 THR A 58 REMARK 465 ARG A 59 REMARK 465 ALA A 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -158.31 -110.31 REMARK 500 ASN A 214 14.67 -145.48 REMARK 500 ASP A 241 -169.00 -161.52 REMARK 500 GLU A 248 -167.73 -162.43 REMARK 500 ASN A 304 10.75 -146.68 REMARK 500 HIS A 315 112.36 -21.11 REMARK 500 ASN A 333 56.58 -142.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE3 A 402 REMARK 610 PE3 A 403 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 251 OE1 REMARK 620 2 HOH A 501 O 145.8 REMARK 620 3 HOH A 502 O 139.6 73.9 REMARK 620 4 HOH A 504 O 68.2 145.1 74.6 REMARK 620 5 HOH A 505 O 69.9 75.9 148.7 136.7 REMARK 620 6 HOH A 513 O 86.5 91.3 85.4 100.7 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 408 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 524 O REMARK 620 2 HOH A 532 O 67.3 REMARK 620 3 HOH A 552 O 71.0 116.1 REMARK 620 4 HOH A 556 O 124.4 167.9 68.9 REMARK 620 5 HOH A 664 O 100.5 68.1 74.8 104.2 REMARK 620 6 XYP B 2 O3 130.9 101.0 142.8 74.2 119.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O8N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STHARAF62A, A GH62 FAMILY ALPHA-L- REMARK 900 ARABINOFURANOSIDASE FROM STREPTOMYCES THERMOVIOLACEUS, IN THE REMARK 900 APOPROTEIN FORM REMARK 900 RELATED ID: 4O8O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF STHARAF62A, A GH62 FAMILY ALPHA-L- REMARK 900 ARABINOFURANOSIDASE FROM STREPTOMYCES THERMOVIOLACEUS, BOUND TO REMARK 900 ALPHA-L-ARABINOSE DBREF 4O8P A 1 363 UNP Q76BV4 Q76BV4_STRTL 1 363 SEQADV 4O8P MET A -20 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P GLY A -19 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P SER A -18 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P SER A -17 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -16 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -15 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -14 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -13 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -12 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P HIS A -11 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P SER A -10 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P SER A -9 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P GLY A -8 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P ARG A -7 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P GLU A -6 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P ASN A -5 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P LEU A -4 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P TYR A -3 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P PHE A -2 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P GLN A -1 UNP Q76BV4 EXPRESSION TAG SEQADV 4O8P GLY A 0 UNP Q76BV4 EXPRESSION TAG SEQRES 1 A 384 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 384 ARG GLU ASN LEU TYR PHE GLN GLY MET SER PHE HIS ARG SEQRES 3 A 384 SER LEU PRO PHE ARG PRO LYS ARG LEU PHE GLY VAL LEU SEQRES 4 A 384 ALA PRO LEU LEU LEU ALA GLY VAL MET SER THR GLN PRO SEQRES 5 A 384 ALA GLY ALA ALA THR VAL VAL PRO SER ASP ASP VAL GLN SEQRES 6 A 384 GLY THR GLY ARG GLN SER GLN LEU THR ASP GLY PHE GLY SEQRES 7 A 384 THR ARG ALA SER CYS GLU LEU PRO SER THR TYR ARG TRP SEQRES 8 A 384 THR SER THR GLY ALA LEU ALA GLN PRO ARG SER GLY TRP SEQRES 9 A 384 VAL SER LEU LYS ASP PHE THR VAL VAL PRO TYR ASN GLY SEQRES 10 A 384 GLN HIS LEU VAL TYR ALA THR THR HIS ASP THR GLY THR SEQRES 11 A 384 ARG TRP GLY SER MET ASN PHE GLU PRO PHE GLY ASP TRP SEQRES 12 A 384 SER GLN MET ALA THR ALA ARG GLN ASN ALA MET ASN SER SEQRES 13 A 384 PRO THR VAL ALA PRO THR LEU PHE TYR PHE ALA PRO LYS SEQRES 14 A 384 ASP ILE TRP VAL LEU ALA TYR GLN TRP GLY GLY SER ALA SEQRES 15 A 384 PHE SER TYR ARG THR SER HIS ASP PRO THR ASP PRO ASN SEQRES 16 A 384 GLY TRP SER SER GLU GLN VAL LEU PHE SER GLY SER ILE SEQRES 17 A 384 ALA ASP SER ALA THR GLY PRO ILE ASP GLN THR LEU ILE SEQRES 18 A 384 GLY ASP ASP THR HIS MET TYR LEU PHE PHE ALA GLY ASP SEQRES 19 A 384 ASN GLY LYS ILE TYR ARG ALA SER MET PRO ILE GLY ASP SEQRES 20 A 384 PHE PRO GLY SER PHE GLY SER THR ALA THR VAL VAL MET SEQRES 21 A 384 SER ASP THR ARG ASN ASN LEU PHE GLU ALA PRO GLN VAL SEQRES 22 A 384 TYR LYS LEU GLN GLY GLN ASN ARG TYR LEU MET ILE VAL SEQRES 23 A 384 GLU ALA ILE GLY ALA GLN GLY GLN ARG TYR PHE ARG SER SEQRES 24 A 384 PHE THR ALA THR SER LEU ASP GLY GLU TRP THR PRO GLN SEQRES 25 A 384 ALA THR SER GLU SER ASN PRO PHE ALA GLY LYS ALA ASN SEQRES 26 A 384 SER GLY ALA THR TRP THR ASP ASP ILE SER HIS GLY GLU SEQRES 27 A 384 LEU ILE ARG THR THR ALA ASP GLN THR MET THR VAL ASP SEQRES 28 A 384 PRO CYS ASN LEU GLN LEU LEU TYR GLN GLY ARG ASP PRO SEQRES 29 A 384 GLY SER GLY GLY THR TYR ASP LEU LEU PRO TYR ARG PRO SEQRES 30 A 384 GLY LEU LEU THR LEU GLN ARG HET XYP B 1 10 HET XYP B 2 9 HET XYP B 3 9 HET XYP B 4 9 HET CA A 401 1 HET PE3 A 402 19 HET PE3 A 403 9 HET K A 408 1 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETNAM K POTASSIUM ION HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN PE3 POLYETHYLENE GLYCOL FORMUL 2 XYP 4(C5 H10 O5) FORMUL 3 CA CA 2+ FORMUL 4 PE3 2(C28 H58 O15) FORMUL 6 K K 1+ FORMUL 7 HOH *473(H2 O) HELIX 1 1 ASP A 121 ALA A 128 5 8 HELIX 2 2 ALA A 146 ASP A 149 5 4 HELIX 3 3 GLY A 225 PHE A 227 5 3 HELIX 4 4 THR A 242 LEU A 246 5 5 HELIX 5 5 ASP A 330 ASN A 333 5 4 HELIX 6 6 THR A 348 LEU A 352 5 5 SHEET 1 A 4 TRP A 70 SER A 72 0 SHEET 2 A 4 ARG A 355 LEU A 361 -1 O THR A 360 N THR A 71 SHEET 3 A 4 GLN A 335 GLY A 340 -1 N LEU A 336 O LEU A 359 SHEET 4 A 4 SER A 314 LEU A 318 -1 N GLU A 317 O LEU A 337 SHEET 1 B 4 TRP A 83 TYR A 94 0 SHEET 2 B 4 GLN A 97 ASP A 106 -1 O LEU A 99 N VAL A 92 SHEET 3 B 4 TRP A 111 PHE A 116 -1 O GLY A 112 N THR A 104 SHEET 4 B 4 GLN A 130 ALA A 132 -1 O ASN A 131 N ASN A 115 SHEET 1 C 4 VAL A 138 PHE A 145 0 SHEET 2 C 4 ILE A 150 GLN A 156 -1 O VAL A 152 N PHE A 143 SHEET 3 C 4 PHE A 162 SER A 167 -1 O SER A 167 N TRP A 151 SHEET 4 C 4 GLN A 180 PHE A 183 -1 O GLN A 180 N TYR A 164 SHEET 1 D 4 ILE A 195 GLY A 201 0 SHEET 2 D 4 HIS A 205 ALA A 211 -1 O PHE A 209 N THR A 198 SHEET 3 D 4 LYS A 216 PRO A 223 -1 O ALA A 220 N LEU A 208 SHEET 4 D 4 THR A 236 SER A 240 -1 O THR A 236 N ARG A 219 SHEET 1 E 5 THR A 289 ALA A 292 0 SHEET 2 E 5 ARG A 274 ALA A 281 -1 N SER A 278 O GLN A 291 SHEET 3 E 5 TYR A 261 ILE A 268 -1 N ALA A 267 O TYR A 275 SHEET 4 E 5 GLU A 248 LEU A 255 -1 N TYR A 253 O LEU A 262 SHEET 5 E 5 THR A 328 VAL A 329 1 O VAL A 329 N LYS A 254 SSBOND 1 CYS A 62 CYS A 332 1555 1555 2.09 LINK O4 XYP B 1 C1 XYP B 2 1555 1555 1.42 LINK O4 XYP B 2 C1 XYP B 3 1555 1555 1.45 LINK O4 XYP B 3 C1 XYP B 4 1555 1555 1.43 LINK OE1 GLN A 251 CA CA A 401 1555 1555 2.43 LINK CA CA A 401 O HOH A 501 1555 1555 2.46 LINK CA CA A 401 O HOH A 502 1555 1555 2.40 LINK CA CA A 401 O HOH A 504 1555 1555 2.46 LINK CA CA A 401 O HOH A 505 1555 1555 2.34 LINK CA CA A 401 O HOH A 513 1555 1555 2.41 LINK K K A 408 O HOH A 524 1555 1555 2.76 LINK K K A 408 O HOH A 532 1555 1555 2.75 LINK K K A 408 O HOH A 552 1555 1555 3.01 LINK K K A 408 O HOH A 556 1555 1555 2.63 LINK K K A 408 O HOH A 664 1555 1555 2.84 LINK K K A 408 O3 XYP B 2 1555 1555 2.80 CISPEP 1 PHE A 227 PRO A 228 0 -5.43 CRYST1 42.491 64.637 121.303 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000