HEADER OXIDOREDUCTASE 01-JAN-14 4O95 TITLE CRYSTAL STRUCTURE OF MAIZE CYTOKININ OXIDASE/DEHYDROGENASE 4 (ZMCKO4) TITLE 2 IN COMPLEX WITH PHENYLUREA INHIBITOR CPPU COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKININ DEHYDROGENASE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 22-541; COMPND 5 EC: 1.5.99.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: CKX4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS CYTOKININ, FLAVOPROTEIN, PHENYL-UREA INHIBITOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOPECNY,S.MORERA,A.VIGOUROUX,R.KONCITIKOVA REVDAT 5 20-NOV-24 4O95 1 REMARK REVDAT 4 24-AUG-22 4O95 1 JRNL REMARK LINK REVDAT 3 25-NOV-15 4O95 1 JRNL REVDAT 2 04-NOV-15 4O95 1 JRNL REVDAT 1 01-APR-15 4O95 0 JRNL AUTH D.KOPECNY,R.KONCITIKOVA,H.POPELKA,P.BRIOZZO,A.VIGOUROUX, JRNL AUTH 2 M.KOPECNA,D.ZALABAK,M.SEBELA,J.SKOPALOVA,I.FREBORT,S.MORERA JRNL TITL KINETIC AND STRUCTURAL INVESTIGATION OF THE CYTOKININ JRNL TITL 2 OXIDASE/DEHYDROGENASE ACTIVE SITE. JRNL REF FEBS J. V. 283 361 2016 JRNL REFN ISSN 1742-464X JRNL PMID 26519657 JRNL DOI 10.1111/FEBS.13581 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 58603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.52 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4292 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2388 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4077 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2756 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 215 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3558 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 134 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.07200 REMARK 3 B22 (A**2) : -5.07200 REMARK 3 B33 (A**2) : 10.14390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.272 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.099 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3782 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5111 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1252 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 610 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3782 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 448 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4439 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.71 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.18 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|38 - A|531 A|601 - A|602 A|603 - A|616 A|701 - REMARK 3 A|872 } REMARK 3 ORIGIN FOR THE GROUP (A): -27.0376 -3.9423 -21.5798 REMARK 3 T TENSOR REMARK 3 T11: -0.0830 T22: -0.1677 REMARK 3 T33: -0.2388 T12: -0.0374 REMARK 3 T13: -0.0029 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.5989 L22: 0.7627 REMARK 3 L33: 3.7090 L12: -0.0676 REMARK 3 L13: 0.3927 L23: -0.5214 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0354 S13: -0.0142 REMARK 3 S21: 0.0847 S22: -0.0712 S23: 0.0770 REMARK 3 S31: 0.0395 S32: -0.1654 S33: 0.0511 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 13.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% ETHYLENE GLYCOL, CO-CRYSTALLIZED REMARK 280 WITH 3MM CPPU IN DMSO, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.12500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.22500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 156.18750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.22500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.06250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 156.18750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.22500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.06250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 VAL A 24 REMARK 465 GLU A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 LEU A 30 REMARK 465 LEU A 31 REMARK 465 GLN A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 GLY A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 292 REMARK 465 GLY A 293 REMARK 465 LEU A 294 REMARK 465 ILE A 295 REMARK 465 ASN A 296 REMARK 465 ASN A 297 REMARK 465 TRP A 298 REMARK 465 ARG A 299 REMARK 465 SER A 300 REMARK 465 SER A 301 REMARK 465 PHE A 302 REMARK 465 PHE A 303 REMARK 465 SER A 304 REMARK 465 PRO A 305 REMARK 465 GLN A 306 REMARK 465 ASN A 307 REMARK 465 PRO A 308 REMARK 465 VAL A 309 REMARK 465 LYS A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 SER A 318 REMARK 465 PRO A 532 REMARK 465 GLY A 533 REMARK 465 SER A 534 REMARK 465 PRO A 535 REMARK 465 ALA A 536 REMARK 465 LEU A 537 REMARK 465 ALA A 538 REMARK 465 ALA A 539 REMARK 465 ASP A 540 REMARK 465 SER A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 89 56.46 -109.55 REMARK 500 TYR A 173 52.86 -90.62 REMARK 500 ASN A 182 -75.12 -118.00 REMARK 500 ALA A 183 -48.68 -172.20 REMARK 500 SER A 186 -169.18 -160.98 REMARK 500 VAL A 406 -61.55 -106.41 REMARK 500 ALA A 416 -82.53 58.82 REMARK 500 LYS A 492 -35.25 63.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 245 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 616 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QKN RELATED DB: PDB REMARK 900 THE SAME INHIBITOR IN COMPLEX WITH ZMCKO1 REMARK 900 RELATED ID: 3KJM RELATED DB: PDB REMARK 900 THE SAME INHIBITOR IN COMPLEX WITH L492A MUTANT VARIANT OF ZMCKO1 REMARK 900 RELATED ID: 4OAL RELATED DB: PDB REMARK 900 RELATED ID: 4MLA RELATED DB: PDB REMARK 900 RELATED ID: 3S1C RELATED DB: PDB REMARK 900 RELATED ID: 3S1E RELATED DB: PDB REMARK 900 RELATED ID: 3S1F RELATED DB: PDB REMARK 900 RELATED ID: 3S1D RELATED DB: PDB REMARK 900 RELATED ID: 4ML8 RELATED DB: PDB DBREF 4O95 A 22 541 UNP E3T1W8 E3T1W8_MAIZE 22 541 SEQRES 1 A 524 ALA GLY HIS MET LEU PRO VAL GLU PRO PRO ALA GLU LEU SEQRES 2 A 524 LEU GLN LEU GLY GLY GLY ASP VAL GLY GLY GLY ARG LEU SEQRES 3 A 524 SER VAL ASP ALA SER ASP ILE ALA GLU ALA SER ARG ASP SEQRES 4 A 524 PHE GLY GLY VAL ALA ARG ALA GLU PRO MET ALA VAL PHE SEQRES 5 A 524 HIS PRO ARG ALA ALA GLY ASP VAL ALA GLY LEU VAL GLY SEQRES 6 A 524 ALA ALA PHE ARG SER ALA ARG GLY PHE ARG VAL SER ALA SEQRES 7 A 524 ARG GLY HIS GLY HIS SER ILE SER GLY GLN ALA GLN ALA SEQRES 8 A 524 ALA GLY GLY VAL VAL VAL ASP MET SER ARG GLY ARG GLY SEQRES 9 A 524 PRO GLY ALA ALA VAL ALA ARG ALA LEU PRO VAL HIS SER SEQRES 10 A 524 ALA ALA LEU GLY GLY HIS TYR VAL ASP VAL TRP GLY GLY SEQRES 11 A 524 GLU LEU TRP VAL ASP VAL LEU ASN TRP THR LEU SER HIS SEQRES 12 A 524 GLY GLY LEU ALA PRO ARG SER TRP THR ASP TYR LEU TYR SEQRES 13 A 524 LEU SER VAL GLY GLY THR LEU SER ASN ALA GLY ILE SER SEQRES 14 A 524 GLY GLN ALA PHE HIS HIS GLY PRO GLN ILE SER ASN VAL SEQRES 15 A 524 TYR GLU LEU ASP VAL VAL THR GLY LYS GLY GLU VAL VAL SEQRES 16 A 524 THR CYS SER GLU THR GLU ASN PRO ASP LEU PHE PHE GLY SEQRES 17 A 524 VAL LEU GLY GLY LEU GLY GLN PHE GLY ILE ILE THR ARG SEQRES 18 A 524 ALA ARG ILE ALA LEU GLU ARG ALA PRO LYS ARG VAL ARG SEQRES 19 A 524 TRP ILE ARG ALA LEU TYR SER ASN PHE SER GLU PHE THR SEQRES 20 A 524 ALA ASP GLN GLU ARG LEU ILE SER LEU GLY SER GLY GLY SEQRES 21 A 524 GLY ARG ARG PHE ASP TYR VAL GLU GLY PHE VAL VAL ALA SEQRES 22 A 524 ALA GLU GLY LEU ILE ASN ASN TRP ARG SER SER PHE PHE SEQRES 23 A 524 SER PRO GLN ASN PRO VAL LYS LEU THR SER LEU LYS HIS SEQRES 24 A 524 HIS SER SER VAL LEU TYR CYS LEU GLU VAL THR LYS ASN SEQRES 25 A 524 TYR ASP ASP GLU THR ALA GLY SER VAL ASP GLN ASP VAL SEQRES 26 A 524 ASP THR LEU LEU GLY GLU LEU ASN PHE LEU PRO GLY THR SEQRES 27 A 524 VAL PHE THR THR ASP LEU PRO TYR VAL ASP PHE LEU ASP SEQRES 28 A 524 ARG VAL HIS LYS ALA GLU LEU LYS LEU ARG ALA LYS GLY SEQRES 29 A 524 MET TRP GLU VAL PRO HIS PRO TRP LEU ASN LEU PHE VAL SEQRES 30 A 524 PRO ALA SER ARG ILE ALA ASP PHE ASP ARG GLY VAL PHE SEQRES 31 A 524 ARG GLY VAL LEU GLY GLY ARG THR ALA GLY ALA GLY GLY SEQRES 32 A 524 PRO VAL LEU ILE TYR PRO MET ASN LYS HIS LYS TRP ASP SEQRES 33 A 524 PRO ARG SER SER ALA VAL THR PRO ASP GLU GLU VAL PHE SEQRES 34 A 524 TYR LEU VAL ALA PHE LEU ARG SER ALA LEU PRO GLY ALA SEQRES 35 A 524 PRO GLU SER LEU GLU ALA LEU ALA ARG GLN ASN GLN ARG SEQRES 36 A 524 ILE LEU ASP PHE CYS ALA GLY THR GLY ILE GLY ALA LYS SEQRES 37 A 524 GLN TYR LEU PRO GLY HIS LYS ALA ARG HIS GLU TRP ALA SEQRES 38 A 524 GLU HIS PHE GLY ALA ALA ARG TRP ASP ARG PHE ALA ARG SEQRES 39 A 524 LEU LYS ALA GLU PHE ASP PRO ARG ALA ILE LEU ALA ALA SEQRES 40 A 524 GLY GLN GLY ILE PHE ARG PRO PRO GLY SER PRO ALA LEU SEQRES 41 A 524 ALA ALA ASP SER HET FAD A 601 53 HET 245 A 602 17 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 4 HET DMS A 613 4 HET PEG A 614 7 HET PEG A 615 7 HET GOL A 616 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 245 1-(2-CHLOROPYRIDIN-4-YL)-3-PHENYLUREA HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 245 C12 H10 CL N3 O FORMUL 4 EDO 10(C2 H6 O2) FORMUL 14 DMS C2 H6 O S FORMUL 15 PEG 2(C4 H10 O3) FORMUL 17 GOL C3 H8 O3 FORMUL 18 HOH *172(H2 O) HELIX 1 1 ASP A 46 SER A 54 1 9 HELIX 2 2 ALA A 73 SER A 87 1 15 HELIX 3 3 GLY A 121 ARG A 128 1 8 HELIX 4 4 LEU A 149 HIS A 160 1 12 HELIX 5 5 SER A 175 SER A 181 1 7 HELIX 6 6 GLN A 188 GLY A 193 1 6 HELIX 7 7 PRO A 194 SER A 197 5 4 HELIX 8 8 ASN A 219 LEU A 227 1 9 HELIX 9 9 ASN A 259 SER A 272 1 14 HELIX 10 10 LEU A 273 GLY A 278 5 6 HELIX 11 11 SER A 337 GLU A 348 1 12 HELIX 12 12 TYR A 363 ASP A 368 1 6 HELIX 13 13 ASP A 368 LYS A 380 1 13 HELIX 14 14 ARG A 398 VAL A 406 1 9 HELIX 15 15 HIS A 430 TRP A 432 5 3 HELIX 16 16 ALA A 459 THR A 480 1 22 HELIX 17 17 ALA A 493 GLY A 502 1 10 HELIX 18 18 GLY A 502 ASP A 517 1 16 HELIX 19 19 ALA A 523 GLY A 527 5 5 SHEET 1 A 4 ARG A 42 SER A 44 0 SHEET 2 A 4 ALA A 67 HIS A 70 -1 O VAL A 68 N SER A 44 SHEET 3 A 4 VAL A 112 ASP A 115 1 O VAL A 113 N PHE A 69 SHEET 4 A 4 VAL A 93 ARG A 96 1 N SER A 94 O VAL A 114 SHEET 1 B 4 VAL A 132 SER A 134 0 SHEET 2 B 4 GLY A 139 TRP A 145 -1 O TYR A 141 N VAL A 132 SHEET 3 B 4 GLY A 234 ARG A 245 -1 O ALA A 239 N VAL A 144 SHEET 4 B 4 LEU A 163 PRO A 165 -1 N ALA A 164 O GLU A 244 SHEET 1 C 5 VAL A 132 SER A 134 0 SHEET 2 C 5 GLY A 139 TRP A 145 -1 O TYR A 141 N VAL A 132 SHEET 3 C 5 GLY A 234 ARG A 245 -1 O ALA A 239 N VAL A 144 SHEET 4 C 5 VAL A 199 THR A 206 -1 N TYR A 200 O ARG A 240 SHEET 5 C 5 VAL A 211 SER A 215 -1 O CYS A 214 N LEU A 202 SHEET 1 D 4 TYR A 283 VAL A 289 0 SHEET 2 D 4 LEU A 321 TYR A 330 -1 O GLU A 325 N GLU A 285 SHEET 3 D 4 ARG A 249 TYR A 257 -1 N ILE A 253 O VAL A 326 SHEET 4 D 4 PHE A 357 PRO A 362 -1 O THR A 359 N TRP A 252 SHEET 1 E 4 VAL A 422 ASN A 428 0 SHEET 2 E 4 VAL A 445 PHE A 451 -1 O LEU A 448 N TYR A 425 SHEET 3 E 4 LEU A 390 PRO A 395 -1 N LEU A 390 O PHE A 451 SHEET 4 E 4 LYS A 485 TYR A 487 -1 O LYS A 485 N PHE A 393 LINK ND1 HIS A 100 C8M FAD A 601 1555 1555 1.45 CISPEP 1 THR A 415 ALA A 416 0 1.70 SITE 1 AC1 33 PHE A 57 ALA A 95 ARG A 96 GLY A 97 SITE 2 AC1 33 HIS A 98 GLY A 99 HIS A 100 SER A 101 SITE 3 AC1 33 GLN A 105 ALA A 106 THR A 169 ASP A 170 SITE 4 AC1 33 TYR A 171 LEU A 174 SER A 175 GLY A 177 SITE 5 AC1 33 GLY A 178 SER A 181 ASN A 182 GLY A 184 SITE 6 AC1 33 ILE A 185 GLY A 234 ILE A 235 ILE A 236 SITE 7 AC1 33 TRP A 389 TYR A 487 LEU A 488 GLN A 526 SITE 8 AC1 33 245 A 602 HOH A 718 HOH A 719 HOH A 746 SITE 9 AC1 33 HOH A 864 SITE 1 AC2 10 ASP A 170 VAL A 370 TRP A 389 ASN A 391 SITE 2 AC2 10 LEU A 423 LEU A 452 TYR A 487 LEU A 488 SITE 3 AC2 10 FAD A 601 EDO A 610 SITE 1 AC3 4 HIS A 98 TYR A 171 HIS A 371 GLU A 374 SITE 1 AC4 4 GLY A 139 HIS A 140 LEU A 243 ARG A 245 SITE 1 AC5 7 PHE A 224 ARG A 435 SER A 436 SER A 437 SITE 2 AC5 7 ARG A 505 ARG A 508 HOH A 716 SITE 1 AC6 6 PHE A 190 HIS A 191 ILE A 271 LEU A 273 SITE 2 AC6 6 ASN A 428 HIS A 430 SITE 1 AC7 4 SER A 159 SER A 397 ARG A 398 GLY A 481 SITE 1 AC8 3 ALA A 510 ALA A 514 PRO A 518 SITE 1 AC9 3 ARG A 166 SER A 197 TYR A 200 SITE 1 BC1 6 HIS A 387 TRP A 389 LEU A 452 ARG A 453 SITE 2 BC1 6 SER A 454 245 A 602 SITE 1 BC2 3 HIS A 192 SER A 197 LYS A 431 SITE 1 BC3 3 ALA A 129 LEU A 130 VAL A 132 SITE 1 BC4 4 TRP A 432 ALA A 438 THR A 440 HOH A 783 SITE 1 BC5 4 ASP A 152 ASN A 155 TYR A 173 GLU A 444 SITE 1 BC6 5 LEU A 474 ALA A 484 GLN A 486 HIS A 491 SITE 2 BC6 5 GLU A 496 SITE 1 BC7 6 TYR A 200 GLU A 201 THR A 217 ARG A 240 SITE 2 BC7 6 GLU A 461 HOH A 776 CRYST1 74.450 74.450 208.250 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004802 0.00000