data_4O9E # _entry.id 4O9E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4O9E pdb_00004o9e 10.2210/pdb4o9e/pdb RCSB RCSB084207 ? ? WWPDB D_1000084207 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4O9G _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4O9E _pdbx_database_status.recvd_initial_deposition_date 2014-01-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Thoden, J.B.' 1 'Holden, H.M.' 2 # _citation.id primary _citation.title 'The molecular architecture of QdtA, a sugar 3,4-ketoisomerase from Thermoanaerobacterium thermosaccharolyticum.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 23 _citation.page_first 683 _citation.page_last 692 _citation.year 2014 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24616215 _citation.pdbx_database_id_DOI 10.1002/pro.2451 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thoden, J.B.' 1 ? primary 'Holden, H.M.' 2 ? # _cell.entry_id 4O9E _cell.length_a 95.788 _cell.length_b 95.788 _cell.length_c 94.679 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4O9E _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man QdtA 17165.820 2 ? ? ? ? 2 non-polymer syn "THYMIDINE-5'-DIPHOSPHATE" 402.188 2 ? ? ? ? 3 non-polymer syn THYMINE 126.113 1 ? ? ? ? 4 non-polymer syn '(2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol' 368.463 1 ? ? ? ? 5 water nat water 18.015 123 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 3,4-ketoisomerase # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLYNVALIKFKDIADKYGHLTPIEGKIDIPFDIKRVYYITKVDKDITRGYHSHKKLHQVLICLNGSVKIRLKIPDEEKII ELNDPSVGLYIGPLVWREMFDFTEGCVLLVLASEYYDETDYIRNYDFYIDEAKKRFLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MLYNVALIKFKDIADKYGHLTPIEGKIDIPFDIKRVYYITKVDKDITRGYHSHKKLHQVLICLNGSVKIRLKIPDEEKII ELNDPSVGLYIGPLVWREMFDFTEGCVLLVLASEYYDETDYIRNYDFYIDEAKKRFLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 TYR n 1 4 ASN n 1 5 VAL n 1 6 ALA n 1 7 LEU n 1 8 ILE n 1 9 LYS n 1 10 PHE n 1 11 LYS n 1 12 ASP n 1 13 ILE n 1 14 ALA n 1 15 ASP n 1 16 LYS n 1 17 TYR n 1 18 GLY n 1 19 HIS n 1 20 LEU n 1 21 THR n 1 22 PRO n 1 23 ILE n 1 24 GLU n 1 25 GLY n 1 26 LYS n 1 27 ILE n 1 28 ASP n 1 29 ILE n 1 30 PRO n 1 31 PHE n 1 32 ASP n 1 33 ILE n 1 34 LYS n 1 35 ARG n 1 36 VAL n 1 37 TYR n 1 38 TYR n 1 39 ILE n 1 40 THR n 1 41 LYS n 1 42 VAL n 1 43 ASP n 1 44 LYS n 1 45 ASP n 1 46 ILE n 1 47 THR n 1 48 ARG n 1 49 GLY n 1 50 TYR n 1 51 HIS n 1 52 SER n 1 53 HIS n 1 54 LYS n 1 55 LYS n 1 56 LEU n 1 57 HIS n 1 58 GLN n 1 59 VAL n 1 60 LEU n 1 61 ILE n 1 62 CYS n 1 63 LEU n 1 64 ASN n 1 65 GLY n 1 66 SER n 1 67 VAL n 1 68 LYS n 1 69 ILE n 1 70 ARG n 1 71 LEU n 1 72 LYS n 1 73 ILE n 1 74 PRO n 1 75 ASP n 1 76 GLU n 1 77 GLU n 1 78 LYS n 1 79 ILE n 1 80 ILE n 1 81 GLU n 1 82 LEU n 1 83 ASN n 1 84 ASP n 1 85 PRO n 1 86 SER n 1 87 VAL n 1 88 GLY n 1 89 LEU n 1 90 TYR n 1 91 ILE n 1 92 GLY n 1 93 PRO n 1 94 LEU n 1 95 VAL n 1 96 TRP n 1 97 ARG n 1 98 GLU n 1 99 MET n 1 100 PHE n 1 101 ASP n 1 102 PHE n 1 103 THR n 1 104 GLU n 1 105 GLY n 1 106 CYS n 1 107 VAL n 1 108 LEU n 1 109 LEU n 1 110 VAL n 1 111 LEU n 1 112 ALA n 1 113 SER n 1 114 GLU n 1 115 TYR n 1 116 TYR n 1 117 ASP n 1 118 GLU n 1 119 THR n 1 120 ASP n 1 121 TYR n 1 122 ILE n 1 123 ARG n 1 124 ASN n 1 125 TYR n 1 126 ASP n 1 127 PHE n 1 128 TYR n 1 129 ILE n 1 130 ASP n 1 131 GLU n 1 132 ALA n 1 133 LYS n 1 134 LYS n 1 135 ARG n 1 136 PHE n 1 137 LEU n 1 138 GLU n 1 139 HIS n 1 140 HIS n 1 141 HIS n 1 142 HIS n 1 143 HIS n 1 144 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene qdtA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain E207-71 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermoanaerobacterium thermosaccharolyticum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1517 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET31 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6TFC5_THETR _struct_ref.pdbx_db_accession Q6TFC5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLYNVALIKFKDIADKYGHLTPIEGKIDIPFDIKRVYYITKVDKDITRGYHAHKKLHQVLICLNGSVKIRLKIPDEEKII ELNDPSVGLYIGPFLWREMFDFTEGCVLLVLASEYCDETDYIRNYDFYIDEAKKRF ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4O9E A 1 ? 136 ? Q6TFC5 1 ? 136 ? 1 136 2 1 4O9E B 1 ? 136 ? Q6TFC5 1 ? 136 ? 1 136 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4O9E SER A 52 ? UNP Q6TFC5 ALA 52 'SEE REMARK 999' 52 1 1 4O9E LEU A 94 ? UNP Q6TFC5 PHE 94 'SEE REMARK 999' 94 2 1 4O9E VAL A 95 ? UNP Q6TFC5 LEU 95 'SEE REMARK 999' 95 3 1 4O9E TYR A 116 ? UNP Q6TFC5 CYS 116 'SEE REMARK 999' 116 4 1 4O9E LEU A 137 ? UNP Q6TFC5 ? ? 'expression tag' 137 5 1 4O9E GLU A 138 ? UNP Q6TFC5 ? ? 'expression tag' 138 6 1 4O9E HIS A 139 ? UNP Q6TFC5 ? ? 'expression tag' 139 7 1 4O9E HIS A 140 ? UNP Q6TFC5 ? ? 'expression tag' 140 8 1 4O9E HIS A 141 ? UNP Q6TFC5 ? ? 'expression tag' 141 9 1 4O9E HIS A 142 ? UNP Q6TFC5 ? ? 'expression tag' 142 10 1 4O9E HIS A 143 ? UNP Q6TFC5 ? ? 'expression tag' 143 11 1 4O9E HIS A 144 ? UNP Q6TFC5 ? ? 'expression tag' 144 12 2 4O9E SER B 52 ? UNP Q6TFC5 ALA 52 'SEE REMARK 999' 52 13 2 4O9E LEU B 94 ? UNP Q6TFC5 PHE 94 'SEE REMARK 999' 94 14 2 4O9E VAL B 95 ? UNP Q6TFC5 LEU 95 'SEE REMARK 999' 95 15 2 4O9E TYR B 116 ? UNP Q6TFC5 CYS 116 'SEE REMARK 999' 116 16 2 4O9E LEU B 137 ? UNP Q6TFC5 ? ? 'expression tag' 137 17 2 4O9E GLU B 138 ? UNP Q6TFC5 ? ? 'expression tag' 138 18 2 4O9E HIS B 139 ? UNP Q6TFC5 ? ? 'expression tag' 139 19 2 4O9E HIS B 140 ? UNP Q6TFC5 ? ? 'expression tag' 140 20 2 4O9E HIS B 141 ? UNP Q6TFC5 ? ? 'expression tag' 141 21 2 4O9E HIS B 142 ? UNP Q6TFC5 ? ? 'expression tag' 142 22 2 4O9E HIS B 143 ? UNP Q6TFC5 ? ? 'expression tag' 143 23 2 4O9E HIS B 144 ? UNP Q6TFC5 ? ? 'expression tag' 144 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4TD non-polymer . '(2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol' 'tetraerythritol propoxylate' 'C17 H36 O8' 368.463 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TDR non-polymer . THYMINE ? 'C5 H6 N2 O2' 126.113 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYD non-polymer . "THYMIDINE-5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4O9E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.16 _exptl_crystal.density_percent_sol 61.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '22-28% pentaerythritol propoxylate, 100 mM HEPPS, 10 mM TDP, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.details 'montel mirrors' _diffrn_detector.type 'Bruker Platinum 135' _diffrn_detector.pdbx_collection_date 2009-01-09 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_k_max ? _reflns.d_resolution_high 2.0 _reflns.observed_criterion_F_min ? _reflns.pdbx_netI_over_sigmaI 18.5 _reflns.observed_criterion_F_max ? _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.limit_l_max ? _reflns.limit_k_min ? _reflns.entry_id 4O9E _reflns.B_iso_Wilson_estimate ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rsym_value 0.069 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.limit_l_min ? _reflns.limit_h_min ? _reflns.R_free_details ? _reflns.number_all 28352 _reflns.d_resolution_low 38.83 _reflns.pdbx_redundancy 6.5 _reflns.number_obs 28352 _reflns.limit_h_max ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.0 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.282 _reflns_shell.pdbx_Rsym_value 0.282 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2040 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_percent_reflns_R_free 5.1 _refine.overall_SU_B 3.939 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4O9E _refine.aniso_B[2][3] 0.00 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML 0.109 _refine.aniso_B[1][3] 0.00 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.aniso_B[3][3] -1.36 _refine.solvent_model_param_ksol ? _refine.ls_number_restraints ? _refine.aniso_B[1][1] 0.68 _refine.pdbx_overall_ESU_R 0.148 _refine.ls_R_factor_obs 0.19895 _refine.occupancy_min ? _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_starting_model 'PDB entry 2PA7' _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.occupancy_max ? _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.ls_number_reflns_R_free 1517 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.pdbx_ls_sigma_F 0 _refine.ls_percent_reflns_obs 98.23 _refine.ls_R_factor_R_work 0.19682 _refine.overall_SU_R_free ? _refine.ls_d_res_high 2.00 _refine.pdbx_overall_ESU_R_Free 0.145 _refine.B_iso_min ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.B_iso_mean 39.695 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all 0.199 _refine.aniso_B[2][2] 0.68 _refine.B_iso_max ? _refine.pdbx_ls_sigma_I 0 _refine.ls_d_res_low 38.83 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details MASK _refine.aniso_B[1][2] 0.00 _refine.ls_R_factor_R_free 0.23946 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 28352 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ? _refine.ls_number_reflns_all 28352 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2283 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 2490 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 38.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.006 0.019 ? 2422 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.000 0.020 ? 2341 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.390 2.015 ? 3278 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.960 3.000 ? 5405 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.603 5.000 ? 272 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.006 23.818 ? 110 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 16.833 15.000 ? 436 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 19.900 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.130 0.200 ? 358 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.012 0.020 ? 2567 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 527 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.number_reflns_R_work 2040 _refine_ls_shell.R_factor_R_work 0.261 _refine_ls_shell.percent_reflns_obs 97.95 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 107 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4O9E _struct.title 'Crystal structure of QdtA, a sugar 3,4-ketoisemerase from Thermoanaerobacterium thermosaccharolyticum in complex with TDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4O9E _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'cupin, 3, 4-ketoisomerase, TDP-sugar binding, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details 'Biological dimer is composed of chains A+B' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 117 ? THR A 119 ? ASP A 117 THR A 119 5 ? 3 HELX_P HELX_P2 2 ASN A 124 ? LEU A 137 ? ASN A 124 LEU A 137 1 ? 14 HELX_P HELX_P3 3 ASP B 117 ? THR B 119 ? ASP B 117 THR B 119 5 ? 3 HELX_P HELX_P4 4 ASN B 124 ? LEU B 137 ? ASN B 124 LEU B 137 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 5 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 5 ? LYS A 9 ? VAL A 5 LYS A 9 A 2 VAL A 87 ? ILE A 91 ? VAL A 87 ILE A 91 A 3 GLN A 58 ? ASN A 64 ? GLN A 58 ASN A 64 A 4 VAL A 107 ? ALA A 112 ? VAL A 107 ALA A 112 A 5 ARG A 35 ? THR A 40 ? ARG A 35 THR A 40 A 6 GLY B 18 ? GLU B 24 ? GLY B 18 GLU B 24 A 7 ILE B 13 ? ASP B 15 ? ILE B 13 ASP B 15 B 1 ILE A 13 ? ASP A 15 ? ILE A 13 ASP A 15 B 2 GLY A 18 ? GLU A 24 ? GLY A 18 GLU A 24 B 3 ARG B 35 ? THR B 40 ? ARG B 35 THR B 40 B 4 VAL B 107 ? ALA B 112 ? VAL B 107 ALA B 112 B 5 GLN B 58 ? ASN B 64 ? GLN B 58 ASN B 64 B 6 VAL B 87 ? ILE B 91 ? VAL B 87 ILE B 91 B 7 VAL B 5 ? LYS B 9 ? VAL B 5 LYS B 9 C 1 GLU A 76 ? LEU A 82 ? GLU A 76 LEU A 82 C 2 VAL A 67 ? ILE A 73 ? VAL A 67 ILE A 73 C 3 TRP A 96 ? PHE A 100 ? TRP A 96 PHE A 100 C 4 THR A 47 ? HIS A 53 ? THR A 47 HIS A 53 C 5 TYR A 121 ? ILE A 122 ? TYR A 121 ILE A 122 D 1 GLU B 76 ? LEU B 82 ? GLU B 76 LEU B 82 D 2 VAL B 67 ? ILE B 73 ? VAL B 67 ILE B 73 D 3 TRP B 96 ? PHE B 100 ? TRP B 96 PHE B 100 D 4 THR B 47 ? HIS B 53 ? THR B 47 HIS B 53 D 5 TYR B 121 ? ILE B 122 ? TYR B 121 ILE B 122 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 8 O GLY A 88 ? O GLY A 88 A 2 3 O LEU A 89 ? O LEU A 89 N LEU A 60 ? N LEU A 60 A 3 4 N ILE A 61 ? N ILE A 61 O LEU A 109 ? O LEU A 109 A 4 5 O LEU A 108 ? O LEU A 108 N ILE A 39 ? N ILE A 39 A 5 6 N VAL A 36 ? N VAL A 36 O ILE B 23 ? O ILE B 23 A 6 7 O LEU B 20 ? O LEU B 20 N ILE B 13 ? N ILE B 13 B 1 2 N ILE A 13 ? N ILE A 13 O LEU A 20 ? O LEU A 20 B 2 3 N ILE A 23 ? N ILE A 23 O VAL B 36 ? O VAL B 36 B 3 4 N TYR B 37 ? N TYR B 37 O VAL B 110 ? O VAL B 110 B 4 5 O LEU B 109 ? O LEU B 109 N ILE B 61 ? N ILE B 61 B 5 6 N LEU B 60 ? N LEU B 60 O LEU B 89 ? O LEU B 89 B 6 7 O GLY B 88 ? O GLY B 88 N ILE B 8 ? N ILE B 8 C 1 2 O LEU A 82 ? O LEU A 82 N VAL A 67 ? N VAL A 67 C 2 3 N ARG A 70 ? N ARG A 70 O GLU A 98 ? O GLU A 98 C 3 4 O MET A 99 ? O MET A 99 N ARG A 48 ? N ARG A 48 C 4 5 N SER A 52 ? N SER A 52 O ILE A 122 ? O ILE A 122 D 1 2 O ILE B 80 ? O ILE B 80 N ILE B 69 ? N ILE B 69 D 2 3 N ARG B 70 ? N ARG B 70 O GLU B 98 ? O GLU B 98 D 3 4 O MET B 99 ? O MET B 99 N ARG B 48 ? N ARG B 48 D 4 5 N SER B 52 ? N SER B 52 O ILE B 122 ? O ILE B 122 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A TYD 201 ? 15 'BINDING SITE FOR RESIDUE TYD A 201' AC2 Software A TDR 202 ? 3 'BINDING SITE FOR RESIDUE TDR A 202' AC3 Software B TYD 201 ? 13 'BINDING SITE FOR RESIDUE TYD B 201' AC4 Software B 4TD 202 ? 8 'BINDING SITE FOR RESIDUE 4TD B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 ARG A 35 ? ARG A 35 . ? 1_555 ? 2 AC1 15 TYR A 37 ? TYR A 37 . ? 1_555 ? 3 AC1 15 ILE A 39 ? ILE A 39 . ? 1_555 ? 4 AC1 15 ARG A 48 ? ARG A 48 . ? 1_555 ? 5 AC1 15 GLY A 49 ? GLY A 49 . ? 1_555 ? 6 AC1 15 HIS A 51 ? HIS A 51 . ? 1_555 ? 7 AC1 15 TYR A 116 ? TYR A 116 . ? 1_555 ? 8 AC1 15 TYR A 121 ? TYR A 121 . ? 1_555 ? 9 AC1 15 ARG A 123 ? ARG A 123 . ? 1_555 ? 10 AC1 15 HOH G . ? HOH A 310 . ? 1_555 ? 11 AC1 15 HOH G . ? HOH A 344 . ? 1_555 ? 12 AC1 15 HOH G . ? HOH A 348 . ? 1_555 ? 13 AC1 15 HOH G . ? HOH A 357 . ? 1_555 ? 14 AC1 15 ILE B 13 ? ILE B 13 . ? 1_555 ? 15 AC1 15 PRO B 22 ? PRO B 22 . ? 1_555 ? 16 AC2 3 LYS A 72 ? LYS A 72 . ? 1_555 ? 17 AC2 3 GLU A 98 ? GLU A 98 . ? 1_555 ? 18 AC2 3 HOH G . ? HOH A 367 . ? 1_555 ? 19 AC3 13 ILE A 13 ? ILE A 13 . ? 1_555 ? 20 AC3 13 PRO A 22 ? PRO A 22 . ? 1_555 ? 21 AC3 13 ARG B 35 ? ARG B 35 . ? 1_555 ? 22 AC3 13 TYR B 37 ? TYR B 37 . ? 1_555 ? 23 AC3 13 ILE B 39 ? ILE B 39 . ? 1_555 ? 24 AC3 13 ARG B 48 ? ARG B 48 . ? 1_555 ? 25 AC3 13 GLY B 49 ? GLY B 49 . ? 1_555 ? 26 AC3 13 HIS B 51 ? HIS B 51 . ? 1_555 ? 27 AC3 13 TYR B 116 ? TYR B 116 . ? 1_555 ? 28 AC3 13 TYR B 121 ? TYR B 121 . ? 1_555 ? 29 AC3 13 ARG B 123 ? ARG B 123 . ? 1_555 ? 30 AC3 13 HOH H . ? HOH B 320 . ? 1_555 ? 31 AC3 13 HOH H . ? HOH B 347 . ? 1_555 ? 32 AC4 8 TYR A 17 ? TYR A 17 . ? 8_555 ? 33 AC4 8 LYS B 72 ? LYS B 72 . ? 1_555 ? 34 AC4 8 LYS B 72 ? LYS B 72 . ? 8_555 ? 35 AC4 8 GLU B 98 ? GLU B 98 . ? 1_555 ? 36 AC4 8 GLU B 98 ? GLU B 98 . ? 8_555 ? 37 AC4 8 TYR B 125 ? TYR B 125 . ? 1_555 ? 38 AC4 8 TYR B 125 ? TYR B 125 . ? 8_555 ? 39 AC4 8 ASP B 126 ? ASP B 126 . ? 8_555 ? # _database_PDB_matrix.entry_id 4O9E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4O9E _atom_sites.fract_transf_matrix[1][1] 0.010440 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010440 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010562 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 HIS 51 51 51 HIS HIS A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ILE 73 73 73 ILE ILE A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 TRP 96 96 96 TRP TRP A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 CYS 106 106 106 CYS CYS A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 TYR 115 115 115 TYR TYR A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 GLU 118 118 118 GLU GLU A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 PHE 127 127 127 PHE PHE A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 LYS 133 133 133 LYS LYS A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 PHE 136 136 136 PHE PHE A . n A 1 137 LEU 137 137 137 LEU ALA A . n A 1 138 GLU 138 138 ? ? ? A . n A 1 139 HIS 139 139 ? ? ? A . n A 1 140 HIS 140 140 ? ? ? A . n A 1 141 HIS 141 141 ? ? ? A . n A 1 142 HIS 142 142 ? ? ? A . n A 1 143 HIS 143 143 ? ? ? A . n A 1 144 HIS 144 144 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 TYR 3 3 3 TYR TYR B . n B 1 4 ASN 4 4 4 ASN ASN B . n B 1 5 VAL 5 5 5 VAL VAL B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 LYS 11 11 11 LYS LYS B . n B 1 12 ASP 12 12 12 ASP ASP B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 LYS 16 16 16 LYS LYS B . n B 1 17 TYR 17 17 17 TYR TYR B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 HIS 19 19 19 HIS HIS B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 GLY 25 25 25 GLY GLY B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 ASP 28 28 28 ASP ASP B . n B 1 29 ILE 29 29 29 ILE ILE B . n B 1 30 PRO 30 30 30 PRO PRO B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 ASP 32 32 32 ASP ASP B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 ARG 35 35 35 ARG ARG B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 TYR 37 37 37 TYR TYR B . n B 1 38 TYR 38 38 38 TYR TYR B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 ASP 43 43 43 ASP ASP B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 ASP 45 45 45 ASP ASP B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 THR 47 47 47 THR THR B . n B 1 48 ARG 48 48 48 ARG ARG B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 TYR 50 50 50 TYR TYR B . n B 1 51 HIS 51 51 51 HIS HIS B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 HIS 53 53 53 HIS HIS B . n B 1 54 LYS 54 54 54 LYS LYS B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 HIS 57 57 57 HIS HIS B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 ILE 61 61 61 ILE ILE B . n B 1 62 CYS 62 62 62 CYS CYS B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 GLY 65 65 65 GLY GLY B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 ILE 69 69 69 ILE ILE B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 LYS 72 72 72 LYS LYS B . n B 1 73 ILE 73 73 73 ILE ILE B . n B 1 74 PRO 74 74 74 PRO PRO B . n B 1 75 ASP 75 75 75 ASP ASP B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 ILE 79 79 79 ILE ILE B . n B 1 80 ILE 80 80 80 ILE ILE B . n B 1 81 GLU 81 81 81 GLU GLU B . n B 1 82 LEU 82 82 82 LEU LEU B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ASP 84 84 84 ASP ASP B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 SER 86 86 86 SER SER B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 GLY 92 92 92 GLY GLY B . n B 1 93 PRO 93 93 93 PRO PRO B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 TRP 96 96 96 TRP TRP B . n B 1 97 ARG 97 97 97 ARG ARG B . n B 1 98 GLU 98 98 98 GLU GLU B . n B 1 99 MET 99 99 99 MET MET B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 ASP 101 101 101 ASP ASP B . n B 1 102 PHE 102 102 102 PHE PHE B . n B 1 103 THR 103 103 103 THR THR B . n B 1 104 GLU 104 104 104 GLU GLU B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 CYS 106 106 106 CYS CYS B . n B 1 107 VAL 107 107 107 VAL VAL B . n B 1 108 LEU 108 108 108 LEU LEU B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 VAL 110 110 110 VAL VAL B . n B 1 111 LEU 111 111 111 LEU LEU B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 SER 113 113 113 SER SER B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 TYR 115 115 115 TYR TYR B . n B 1 116 TYR 116 116 116 TYR TYR B . n B 1 117 ASP 117 117 117 ASP ASP B . n B 1 118 GLU 118 118 118 GLU GLU B . n B 1 119 THR 119 119 119 THR THR B . n B 1 120 ASP 120 120 120 ASP ASP B . n B 1 121 TYR 121 121 121 TYR TYR B . n B 1 122 ILE 122 122 122 ILE ILE B . n B 1 123 ARG 123 123 123 ARG ARG B . n B 1 124 ASN 124 124 124 ASN ASN B . n B 1 125 TYR 125 125 125 TYR TYR B . n B 1 126 ASP 126 126 126 ASP ASP B . n B 1 127 PHE 127 127 127 PHE PHE B . n B 1 128 TYR 128 128 128 TYR TYR B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 ASP 130 130 130 ASP ASP B . n B 1 131 GLU 131 131 131 GLU GLU B . n B 1 132 ALA 132 132 132 ALA ALA B . n B 1 133 LYS 133 133 133 LYS LYS B . n B 1 134 LYS 134 134 134 LYS LYS B . n B 1 135 ARG 135 135 135 ARG ARG B . n B 1 136 PHE 136 136 136 PHE PHE B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 GLU 138 138 ? ? ? B . n B 1 139 HIS 139 139 ? ? ? B . n B 1 140 HIS 140 140 ? ? ? B . n B 1 141 HIS 141 141 ? ? ? B . n B 1 142 HIS 142 142 ? ? ? B . n B 1 143 HIS 143 143 ? ? ? B . n B 1 144 HIS 144 144 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TYD 1 201 1 TYD TYD A . D 3 TDR 1 202 1 TDR TDR A . E 2 TYD 1 201 1 TYD TYD B . F 4 4TD 1 202 1 4TD X21 B . G 5 HOH 1 301 2 HOH HOH A . G 5 HOH 2 302 3 HOH HOH A . G 5 HOH 3 303 4 HOH HOH A . G 5 HOH 4 304 8 HOH HOH A . G 5 HOH 5 305 9 HOH HOH A . G 5 HOH 6 306 10 HOH HOH A . G 5 HOH 7 307 16 HOH HOH A . G 5 HOH 8 308 17 HOH HOH A . G 5 HOH 9 309 20 HOH HOH A . G 5 HOH 10 310 25 HOH HOH A . G 5 HOH 11 311 27 HOH HOH A . G 5 HOH 12 312 28 HOH HOH A . G 5 HOH 13 313 29 HOH HOH A . G 5 HOH 14 314 33 HOH HOH A . G 5 HOH 15 315 34 HOH HOH A . G 5 HOH 16 316 36 HOH HOH A . G 5 HOH 17 317 40 HOH HOH A . G 5 HOH 18 318 48 HOH HOH A . G 5 HOH 19 319 49 HOH HOH A . G 5 HOH 20 320 55 HOH HOH A . G 5 HOH 21 321 58 HOH HOH A . G 5 HOH 22 322 76 HOH HOH A . G 5 HOH 23 323 100 HOH HOH A . G 5 HOH 24 324 121 HOH HOH A . G 5 HOH 25 325 122 HOH HOH A . G 5 HOH 26 326 123 HOH HOH A . G 5 HOH 27 327 127 HOH HOH A . G 5 HOH 28 328 128 HOH HOH A . G 5 HOH 29 329 129 HOH HOH A . G 5 HOH 30 330 130 HOH HOH A . G 5 HOH 31 331 131 HOH HOH A . G 5 HOH 32 332 141 HOH HOH A . G 5 HOH 33 333 142 HOH HOH A . G 5 HOH 34 334 143 HOH HOH A . G 5 HOH 35 335 144 HOH HOH A . G 5 HOH 36 336 145 HOH HOH A . G 5 HOH 37 337 146 HOH HOH A . G 5 HOH 38 338 147 HOH HOH A . G 5 HOH 39 339 148 HOH HOH A . G 5 HOH 40 340 150 HOH HOH A . G 5 HOH 41 341 152 HOH HOH A . G 5 HOH 42 342 153 HOH HOH A . G 5 HOH 43 343 154 HOH HOH A . G 5 HOH 44 344 155 HOH HOH A . G 5 HOH 45 345 156 HOH HOH A . G 5 HOH 46 346 158 HOH HOH A . G 5 HOH 47 347 159 HOH HOH A . G 5 HOH 48 348 160 HOH HOH A . G 5 HOH 49 349 161 HOH HOH A . G 5 HOH 50 350 162 HOH HOH A . G 5 HOH 51 351 163 HOH HOH A . G 5 HOH 52 352 164 HOH HOH A . G 5 HOH 53 353 165 HOH HOH A . G 5 HOH 54 354 169 HOH HOH A . G 5 HOH 55 355 170 HOH HOH A . G 5 HOH 56 356 171 HOH HOH A . G 5 HOH 57 357 173 HOH HOH A . G 5 HOH 58 358 183 HOH HOH A . G 5 HOH 59 359 184 HOH HOH A . G 5 HOH 60 360 185 HOH HOH A . G 5 HOH 61 361 191 HOH HOH A . G 5 HOH 62 362 192 HOH HOH A . G 5 HOH 63 363 193 HOH HOH A . G 5 HOH 64 364 194 HOH HOH A . G 5 HOH 65 365 195 HOH HOH A . G 5 HOH 66 366 196 HOH HOH A . G 5 HOH 67 367 201 HOH HOH A . G 5 HOH 68 368 174 HOH HOH A . G 5 HOH 69 369 186 HOH HOH A . H 5 HOH 1 301 1 HOH HOH B . H 5 HOH 2 302 5 HOH HOH B . H 5 HOH 3 303 6 HOH HOH B . H 5 HOH 4 304 7 HOH HOH B . H 5 HOH 5 305 11 HOH HOH B . H 5 HOH 6 306 13 HOH HOH B . H 5 HOH 7 307 14 HOH HOH B . H 5 HOH 8 308 15 HOH HOH B . H 5 HOH 9 309 18 HOH HOH B . H 5 HOH 10 310 23 HOH HOH B . H 5 HOH 11 311 24 HOH HOH B . H 5 HOH 12 312 26 HOH HOH B . H 5 HOH 13 313 30 HOH HOH B . H 5 HOH 14 314 32 HOH HOH B . H 5 HOH 15 315 39 HOH HOH B . H 5 HOH 16 316 45 HOH HOH B . H 5 HOH 17 317 46 HOH HOH B . H 5 HOH 18 318 52 HOH HOH B . H 5 HOH 19 319 57 HOH HOH B . H 5 HOH 20 320 124 HOH HOH B . H 5 HOH 21 321 125 HOH HOH B . H 5 HOH 22 322 126 HOH HOH B . H 5 HOH 23 323 132 HOH HOH B . H 5 HOH 24 324 133 HOH HOH B . H 5 HOH 25 325 134 HOH HOH B . H 5 HOH 26 326 135 HOH HOH B . H 5 HOH 27 327 136 HOH HOH B . H 5 HOH 28 328 137 HOH HOH B . H 5 HOH 29 329 138 HOH HOH B . H 5 HOH 30 330 139 HOH HOH B . H 5 HOH 31 331 140 HOH HOH B . H 5 HOH 32 332 149 HOH HOH B . H 5 HOH 33 333 151 HOH HOH B . H 5 HOH 34 334 157 HOH HOH B . H 5 HOH 35 335 172 HOH HOH B . H 5 HOH 36 336 175 HOH HOH B . H 5 HOH 37 337 176 HOH HOH B . H 5 HOH 38 338 177 HOH HOH B . H 5 HOH 39 339 178 HOH HOH B . H 5 HOH 40 340 179 HOH HOH B . H 5 HOH 41 341 180 HOH HOH B . H 5 HOH 42 342 181 HOH HOH B . H 5 HOH 43 343 182 HOH HOH B . H 5 HOH 44 344 187 HOH HOH B . H 5 HOH 45 345 188 HOH HOH B . H 5 HOH 46 346 189 HOH HOH B . H 5 HOH 47 347 190 HOH HOH B . H 5 HOH 48 348 197 HOH HOH B . H 5 HOH 49 349 198 HOH HOH B . H 5 HOH 50 350 199 HOH HOH B . H 5 HOH 51 351 200 HOH HOH B . H 5 HOH 52 352 202 HOH HOH B . H 5 HOH 53 353 203 HOH HOH B . H 5 HOH 54 354 204 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id 4TD _pdbx_struct_special_symmetry.auth_seq_id 202 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id 4TD _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-09 2 'Structure model' 1 1 2014-06-11 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0029 ? 3 SAINT 'data reduction' . ? 4 SADABS 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 4O9E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AUTHOR STATE THE FOLLOWING: ALA 52-> SER, PHE 94 -> LEU, LEU 95 ->VAL, AND CYS 116 -> TYR WE BELIEVE ARE SEQUENCING ERRORS IN THE DATA BASE DEPOSITION AS PCR USING VARIOUS ENZYMES AND TECHNIQUES ALWAYS GAVE GENES WITH THIS SEQUENCE AND NOT THAT DEPOSITED, AND AS SUCH WE HAVE DISCUSSED THAT IN THE PAPER ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 32 ? ? O A HOH 333 ? ? 2.05 2 1 O A HOH 349 ? ? O A HOH 362 ? ? 2.07 3 1 O A HOH 305 ? ? O A HOH 333 ? ? 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 12 ? ? CG A ASP 12 ? ? OD1 A ASP 12 ? ? 124.98 118.30 6.68 0.90 N 2 1 CB A ASP 126 ? ? CG A ASP 126 ? ? OD1 A ASP 126 ? ? 123.90 118.30 5.60 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 15 ? ? -160.99 -163.84 2 1 LYS A 26 ? ? 66.81 -11.00 3 1 ILE A 27 ? ? -107.98 -62.14 4 1 TYR A 50 ? ? 71.04 56.58 5 1 ASP A 75 ? ? 80.88 10.32 6 1 ASN A 83 ? ? -148.20 11.85 7 1 ASP B 15 ? ? -157.93 -154.30 8 1 LYS B 26 ? ? 68.67 -6.83 9 1 ILE B 27 ? ? -107.26 -67.67 10 1 ASP B 75 ? ? 87.12 -4.04 11 1 ASN B 83 ? ? -157.60 14.50 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 104 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLY _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 105 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -59.70 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 137 ? CG ? A LEU 137 CG 2 1 Y 1 A LEU 137 ? CD1 ? A LEU 137 CD1 3 1 Y 1 A LEU 137 ? CD2 ? A LEU 137 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 138 ? A GLU 138 2 1 Y 1 A HIS 139 ? A HIS 139 3 1 Y 1 A HIS 140 ? A HIS 140 4 1 Y 1 A HIS 141 ? A HIS 141 5 1 Y 1 A HIS 142 ? A HIS 142 6 1 Y 1 A HIS 143 ? A HIS 143 7 1 Y 1 A HIS 144 ? A HIS 144 8 1 Y 1 B GLU 138 ? B GLU 138 9 1 Y 1 B HIS 139 ? B HIS 139 10 1 Y 1 B HIS 140 ? B HIS 140 11 1 Y 1 B HIS 141 ? B HIS 141 12 1 Y 1 B HIS 142 ? B HIS 142 13 1 Y 1 B HIS 143 ? B HIS 143 14 1 Y 1 B HIS 144 ? B HIS 144 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 4TD C1 C N N 1 4TD C2 C N N 2 4TD C4 C N N 3 4TD C5 C N S 4 4TD C6 C N N 5 4TD C8 C N N 6 4TD C10 C N N 7 4TD C11 C N S 8 4TD C12 C N N 9 4TD C14 C N N 10 4TD C16 C N N 11 4TD C17 C N S 12 4TD C18 C N N 13 4TD C20 C N N 14 4TD C22 C N N 15 4TD C23 C N R 16 4TD C24 C N N 17 4TD O25 O N N 18 4TD O21 O N N 19 4TD O15 O N N 20 4TD O19 O N N 21 4TD O9 O N N 22 4TD O13 O N N 23 4TD O3 O N N 24 4TD O7 O N N 25 4TD H1 H N N 26 4TD H2 H N N 27 4TD H3 H N N 28 4TD H4 H N N 29 4TD H5 H N N 30 4TD H6 H N N 31 4TD H7 H N N 32 4TD H8 H N N 33 4TD H9 H N N 34 4TD H10 H N N 35 4TD H11 H N N 36 4TD H12 H N N 37 4TD H13 H N N 38 4TD H14 H N N 39 4TD H15 H N N 40 4TD H16 H N N 41 4TD H17 H N N 42 4TD H18 H N N 43 4TD H19 H N N 44 4TD H20 H N N 45 4TD H21 H N N 46 4TD H22 H N N 47 4TD H23 H N N 48 4TD H24 H N N 49 4TD H25 H N N 50 4TD H26 H N N 51 4TD H27 H N N 52 4TD H28 H N N 53 4TD H29 H N N 54 4TD H30 H N N 55 4TD H31 H N N 56 4TD H32 H N N 57 4TD H33 H N N 58 4TD H34 H N N 59 4TD H35 H N N 60 4TD H36 H N N 61 ALA N N N N 62 ALA CA C N S 63 ALA C C N N 64 ALA O O N N 65 ALA CB C N N 66 ALA OXT O N N 67 ALA H H N N 68 ALA H2 H N N 69 ALA HA H N N 70 ALA HB1 H N N 71 ALA HB2 H N N 72 ALA HB3 H N N 73 ALA HXT H N N 74 ARG N N N N 75 ARG CA C N S 76 ARG C C N N 77 ARG O O N N 78 ARG CB C N N 79 ARG CG C N N 80 ARG CD C N N 81 ARG NE N N N 82 ARG CZ C N N 83 ARG NH1 N N N 84 ARG NH2 N N N 85 ARG OXT O N N 86 ARG H H N N 87 ARG H2 H N N 88 ARG HA H N N 89 ARG HB2 H N N 90 ARG HB3 H N N 91 ARG HG2 H N N 92 ARG HG3 H N N 93 ARG HD2 H N N 94 ARG HD3 H N N 95 ARG HE H N N 96 ARG HH11 H N N 97 ARG HH12 H N N 98 ARG HH21 H N N 99 ARG HH22 H N N 100 ARG HXT H N N 101 ASN N N N N 102 ASN CA C N S 103 ASN C C N N 104 ASN O O N N 105 ASN CB C N N 106 ASN CG C N N 107 ASN OD1 O N N 108 ASN ND2 N N N 109 ASN OXT O N N 110 ASN H H N N 111 ASN H2 H N N 112 ASN HA H N N 113 ASN HB2 H N N 114 ASN HB3 H N N 115 ASN HD21 H N N 116 ASN HD22 H N N 117 ASN HXT H N N 118 ASP N N N N 119 ASP CA C N S 120 ASP C C N N 121 ASP O O N N 122 ASP CB C N N 123 ASP CG C N N 124 ASP OD1 O N N 125 ASP OD2 O N N 126 ASP OXT O N N 127 ASP H H N N 128 ASP H2 H N N 129 ASP HA H N N 130 ASP HB2 H N N 131 ASP HB3 H N N 132 ASP HD2 H N N 133 ASP HXT H N N 134 CYS N N N N 135 CYS CA C N R 136 CYS C C N N 137 CYS O O N N 138 CYS CB C N N 139 CYS SG S N N 140 CYS OXT O N N 141 CYS H H N N 142 CYS H2 H N N 143 CYS HA H N N 144 CYS HB2 H N N 145 CYS HB3 H N N 146 CYS HG H N N 147 CYS HXT H N N 148 GLN N N N N 149 GLN CA C N S 150 GLN C C N N 151 GLN O O N N 152 GLN CB C N N 153 GLN CG C N N 154 GLN CD C N N 155 GLN OE1 O N N 156 GLN NE2 N N N 157 GLN OXT O N N 158 GLN H H N N 159 GLN H2 H N N 160 GLN HA H N N 161 GLN HB2 H N N 162 GLN HB3 H N N 163 GLN HG2 H N N 164 GLN HG3 H N N 165 GLN HE21 H N N 166 GLN HE22 H N N 167 GLN HXT H N N 168 GLU N N N N 169 GLU CA C N S 170 GLU C C N N 171 GLU O O N N 172 GLU CB C N N 173 GLU CG C N N 174 GLU CD C N N 175 GLU OE1 O N N 176 GLU OE2 O N N 177 GLU OXT O N N 178 GLU H H N N 179 GLU H2 H N N 180 GLU HA H N N 181 GLU HB2 H N N 182 GLU HB3 H N N 183 GLU HG2 H N N 184 GLU HG3 H N N 185 GLU HE2 H N N 186 GLU HXT H N N 187 GLY N N N N 188 GLY CA C N N 189 GLY C C N N 190 GLY O O N N 191 GLY OXT O N N 192 GLY H H N N 193 GLY H2 H N N 194 GLY HA2 H N N 195 GLY HA3 H N N 196 GLY HXT H N N 197 HIS N N N N 198 HIS CA C N S 199 HIS C C N N 200 HIS O O N N 201 HIS CB C N N 202 HIS CG C Y N 203 HIS ND1 N Y N 204 HIS CD2 C Y N 205 HIS CE1 C Y N 206 HIS NE2 N Y N 207 HIS OXT O N N 208 HIS H H N N 209 HIS H2 H N N 210 HIS HA H N N 211 HIS HB2 H N N 212 HIS HB3 H N N 213 HIS HD1 H N N 214 HIS HD2 H N N 215 HIS HE1 H N N 216 HIS HE2 H N N 217 HIS HXT H N N 218 HOH O O N N 219 HOH H1 H N N 220 HOH H2 H N N 221 ILE N N N N 222 ILE CA C N S 223 ILE C C N N 224 ILE O O N N 225 ILE CB C N S 226 ILE CG1 C N N 227 ILE CG2 C N N 228 ILE CD1 C N N 229 ILE OXT O N N 230 ILE H H N N 231 ILE H2 H N N 232 ILE HA H N N 233 ILE HB H N N 234 ILE HG12 H N N 235 ILE HG13 H N N 236 ILE HG21 H N N 237 ILE HG22 H N N 238 ILE HG23 H N N 239 ILE HD11 H N N 240 ILE HD12 H N N 241 ILE HD13 H N N 242 ILE HXT H N N 243 LEU N N N N 244 LEU CA C N S 245 LEU C C N N 246 LEU O O N N 247 LEU CB C N N 248 LEU CG C N N 249 LEU CD1 C N N 250 LEU CD2 C N N 251 LEU OXT O N N 252 LEU H H N N 253 LEU H2 H N N 254 LEU HA H N N 255 LEU HB2 H N N 256 LEU HB3 H N N 257 LEU HG H N N 258 LEU HD11 H N N 259 LEU HD12 H N N 260 LEU HD13 H N N 261 LEU HD21 H N N 262 LEU HD22 H N N 263 LEU HD23 H N N 264 LEU HXT H N N 265 LYS N N N N 266 LYS CA C N S 267 LYS C C N N 268 LYS O O N N 269 LYS CB C N N 270 LYS CG C N N 271 LYS CD C N N 272 LYS CE C N N 273 LYS NZ N N N 274 LYS OXT O N N 275 LYS H H N N 276 LYS H2 H N N 277 LYS HA H N N 278 LYS HB2 H N N 279 LYS HB3 H N N 280 LYS HG2 H N N 281 LYS HG3 H N N 282 LYS HD2 H N N 283 LYS HD3 H N N 284 LYS HE2 H N N 285 LYS HE3 H N N 286 LYS HZ1 H N N 287 LYS HZ2 H N N 288 LYS HZ3 H N N 289 LYS HXT H N N 290 MET N N N N 291 MET CA C N S 292 MET C C N N 293 MET O O N N 294 MET CB C N N 295 MET CG C N N 296 MET SD S N N 297 MET CE C N N 298 MET OXT O N N 299 MET H H N N 300 MET H2 H N N 301 MET HA H N N 302 MET HB2 H N N 303 MET HB3 H N N 304 MET HG2 H N N 305 MET HG3 H N N 306 MET HE1 H N N 307 MET HE2 H N N 308 MET HE3 H N N 309 MET HXT H N N 310 PHE N N N N 311 PHE CA C N S 312 PHE C C N N 313 PHE O O N N 314 PHE CB C N N 315 PHE CG C Y N 316 PHE CD1 C Y N 317 PHE CD2 C Y N 318 PHE CE1 C Y N 319 PHE CE2 C Y N 320 PHE CZ C Y N 321 PHE OXT O N N 322 PHE H H N N 323 PHE H2 H N N 324 PHE HA H N N 325 PHE HB2 H N N 326 PHE HB3 H N N 327 PHE HD1 H N N 328 PHE HD2 H N N 329 PHE HE1 H N N 330 PHE HE2 H N N 331 PHE HZ H N N 332 PHE HXT H N N 333 PRO N N N N 334 PRO CA C N S 335 PRO C C N N 336 PRO O O N N 337 PRO CB C N N 338 PRO CG C N N 339 PRO CD C N N 340 PRO OXT O N N 341 PRO H H N N 342 PRO HA H N N 343 PRO HB2 H N N 344 PRO HB3 H N N 345 PRO HG2 H N N 346 PRO HG3 H N N 347 PRO HD2 H N N 348 PRO HD3 H N N 349 PRO HXT H N N 350 SER N N N N 351 SER CA C N S 352 SER C C N N 353 SER O O N N 354 SER CB C N N 355 SER OG O N N 356 SER OXT O N N 357 SER H H N N 358 SER H2 H N N 359 SER HA H N N 360 SER HB2 H N N 361 SER HB3 H N N 362 SER HG H N N 363 SER HXT H N N 364 TDR N1 N N N 365 TDR C2 C N N 366 TDR O2 O N N 367 TDR N3 N N N 368 TDR C4 C N N 369 TDR O4 O N N 370 TDR C5 C N N 371 TDR CM5 C N N 372 TDR C6 C N N 373 TDR HN1 H N N 374 TDR HN3 H N N 375 TDR H5M1 H N N 376 TDR H5M2 H N N 377 TDR H5M3 H N N 378 TDR H6 H N N 379 THR N N N N 380 THR CA C N S 381 THR C C N N 382 THR O O N N 383 THR CB C N R 384 THR OG1 O N N 385 THR CG2 C N N 386 THR OXT O N N 387 THR H H N N 388 THR H2 H N N 389 THR HA H N N 390 THR HB H N N 391 THR HG1 H N N 392 THR HG21 H N N 393 THR HG22 H N N 394 THR HG23 H N N 395 THR HXT H N N 396 TRP N N N N 397 TRP CA C N S 398 TRP C C N N 399 TRP O O N N 400 TRP CB C N N 401 TRP CG C Y N 402 TRP CD1 C Y N 403 TRP CD2 C Y N 404 TRP NE1 N Y N 405 TRP CE2 C Y N 406 TRP CE3 C Y N 407 TRP CZ2 C Y N 408 TRP CZ3 C Y N 409 TRP CH2 C Y N 410 TRP OXT O N N 411 TRP H H N N 412 TRP H2 H N N 413 TRP HA H N N 414 TRP HB2 H N N 415 TRP HB3 H N N 416 TRP HD1 H N N 417 TRP HE1 H N N 418 TRP HE3 H N N 419 TRP HZ2 H N N 420 TRP HZ3 H N N 421 TRP HH2 H N N 422 TRP HXT H N N 423 TYD PA P N S 424 TYD O1A O N N 425 TYD O2A O N N 426 TYD O3A O N N 427 TYD PB P N N 428 TYD O1B O N N 429 TYD O2B O N N 430 TYD O3B O N N 431 TYD "O5'" O N N 432 TYD "C5'" C N N 433 TYD "C4'" C N R 434 TYD "O4'" O N N 435 TYD "C3'" C N S 436 TYD "O3'" O N N 437 TYD "C2'" C N N 438 TYD "C1'" C N R 439 TYD N1 N Y N 440 TYD C2 C Y N 441 TYD O2 O N N 442 TYD N3 N Y N 443 TYD C4 C Y N 444 TYD O4 O N N 445 TYD C5 C Y N 446 TYD C5M C N N 447 TYD C6 C Y N 448 TYD HOA2 H N N 449 TYD HOB2 H N N 450 TYD HOB3 H N N 451 TYD "H5'1" H N N 452 TYD "H5'2" H N N 453 TYD "H4'" H N N 454 TYD "H3'" H N N 455 TYD "HO3'" H N N 456 TYD "H2'1" H N N 457 TYD "H2'2" H N N 458 TYD "H1'" H N N 459 TYD HN3 H N N 460 TYD H51 H N N 461 TYD H52 H N N 462 TYD H53 H N N 463 TYD H6 H N N 464 TYR N N N N 465 TYR CA C N S 466 TYR C C N N 467 TYR O O N N 468 TYR CB C N N 469 TYR CG C Y N 470 TYR CD1 C Y N 471 TYR CD2 C Y N 472 TYR CE1 C Y N 473 TYR CE2 C Y N 474 TYR CZ C Y N 475 TYR OH O N N 476 TYR OXT O N N 477 TYR H H N N 478 TYR H2 H N N 479 TYR HA H N N 480 TYR HB2 H N N 481 TYR HB3 H N N 482 TYR HD1 H N N 483 TYR HD2 H N N 484 TYR HE1 H N N 485 TYR HE2 H N N 486 TYR HH H N N 487 TYR HXT H N N 488 VAL N N N N 489 VAL CA C N S 490 VAL C C N N 491 VAL O O N N 492 VAL CB C N N 493 VAL CG1 C N N 494 VAL CG2 C N N 495 VAL OXT O N N 496 VAL H H N N 497 VAL H2 H N N 498 VAL HA H N N 499 VAL HB H N N 500 VAL HG11 H N N 501 VAL HG12 H N N 502 VAL HG13 H N N 503 VAL HG21 H N N 504 VAL HG22 H N N 505 VAL HG23 H N N 506 VAL HXT H N N 507 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 4TD O13 C11 sing N N 1 4TD C11 C12 sing N N 2 4TD C11 C10 sing N N 3 4TD C10 O9 sing N N 4 4TD O9 C8 sing N N 5 4TD C8 C1 sing N N 6 4TD C24 C23 sing N N 7 4TD O25 C23 sing N N 8 4TD C14 C1 sing N N 9 4TD C14 O15 sing N N 10 4TD C16 O15 sing N N 11 4TD C16 C17 sing N N 12 4TD C23 C22 sing N N 13 4TD C22 O21 sing N N 14 4TD C1 C20 sing N N 15 4TD C1 C2 sing N N 16 4TD O19 C17 sing N N 17 4TD O21 C20 sing N N 18 4TD C17 C18 sing N N 19 4TD C2 O3 sing N N 20 4TD C6 C5 sing N N 21 4TD O3 C4 sing N N 22 4TD C4 C5 sing N N 23 4TD C5 O7 sing N N 24 4TD C2 H1 sing N N 25 4TD C2 H2 sing N N 26 4TD C4 H3 sing N N 27 4TD C4 H4 sing N N 28 4TD C5 H5 sing N N 29 4TD C6 H6 sing N N 30 4TD C6 H7 sing N N 31 4TD C6 H8 sing N N 32 4TD C8 H9 sing N N 33 4TD C8 H10 sing N N 34 4TD C10 H11 sing N N 35 4TD C10 H12 sing N N 36 4TD C11 H13 sing N N 37 4TD C12 H14 sing N N 38 4TD C12 H15 sing N N 39 4TD C12 H16 sing N N 40 4TD C14 H17 sing N N 41 4TD C14 H18 sing N N 42 4TD C16 H19 sing N N 43 4TD C16 H20 sing N N 44 4TD C17 H21 sing N N 45 4TD C18 H22 sing N N 46 4TD C18 H23 sing N N 47 4TD C18 H24 sing N N 48 4TD C20 H25 sing N N 49 4TD C20 H26 sing N N 50 4TD C22 H27 sing N N 51 4TD C22 H28 sing N N 52 4TD C23 H29 sing N N 53 4TD C24 H30 sing N N 54 4TD C24 H31 sing N N 55 4TD C24 H32 sing N N 56 4TD O25 H33 sing N N 57 4TD O19 H34 sing N N 58 4TD O13 H35 sing N N 59 4TD O7 H36 sing N N 60 ALA N CA sing N N 61 ALA N H sing N N 62 ALA N H2 sing N N 63 ALA CA C sing N N 64 ALA CA CB sing N N 65 ALA CA HA sing N N 66 ALA C O doub N N 67 ALA C OXT sing N N 68 ALA CB HB1 sing N N 69 ALA CB HB2 sing N N 70 ALA CB HB3 sing N N 71 ALA OXT HXT sing N N 72 ARG N CA sing N N 73 ARG N H sing N N 74 ARG N H2 sing N N 75 ARG CA C sing N N 76 ARG CA CB sing N N 77 ARG CA HA sing N N 78 ARG C O doub N N 79 ARG C OXT sing N N 80 ARG CB CG sing N N 81 ARG CB HB2 sing N N 82 ARG CB HB3 sing N N 83 ARG CG CD sing N N 84 ARG CG HG2 sing N N 85 ARG CG HG3 sing N N 86 ARG CD NE sing N N 87 ARG CD HD2 sing N N 88 ARG CD HD3 sing N N 89 ARG NE CZ sing N N 90 ARG NE HE sing N N 91 ARG CZ NH1 sing N N 92 ARG CZ NH2 doub N N 93 ARG NH1 HH11 sing N N 94 ARG NH1 HH12 sing N N 95 ARG NH2 HH21 sing N N 96 ARG NH2 HH22 sing N N 97 ARG OXT HXT sing N N 98 ASN N CA sing N N 99 ASN N H sing N N 100 ASN N H2 sing N N 101 ASN CA C sing N N 102 ASN CA CB sing N N 103 ASN CA HA sing N N 104 ASN C O doub N N 105 ASN C OXT sing N N 106 ASN CB CG sing N N 107 ASN CB HB2 sing N N 108 ASN CB HB3 sing N N 109 ASN CG OD1 doub N N 110 ASN CG ND2 sing N N 111 ASN ND2 HD21 sing N N 112 ASN ND2 HD22 sing N N 113 ASN OXT HXT sing N N 114 ASP N CA sing N N 115 ASP N H sing N N 116 ASP N H2 sing N N 117 ASP CA C sing N N 118 ASP CA CB sing N N 119 ASP CA HA sing N N 120 ASP C O doub N N 121 ASP C OXT sing N N 122 ASP CB CG sing N N 123 ASP CB HB2 sing N N 124 ASP CB HB3 sing N N 125 ASP CG OD1 doub N N 126 ASP CG OD2 sing N N 127 ASP OD2 HD2 sing N N 128 ASP OXT HXT sing N N 129 CYS N CA sing N N 130 CYS N H sing N N 131 CYS N H2 sing N N 132 CYS CA C sing N N 133 CYS CA CB sing N N 134 CYS CA HA sing N N 135 CYS C O doub N N 136 CYS C OXT sing N N 137 CYS CB SG sing N N 138 CYS CB HB2 sing N N 139 CYS CB HB3 sing N N 140 CYS SG HG sing N N 141 CYS OXT HXT sing N N 142 GLN N CA sing N N 143 GLN N H sing N N 144 GLN N H2 sing N N 145 GLN CA C sing N N 146 GLN CA CB sing N N 147 GLN CA HA sing N N 148 GLN C O doub N N 149 GLN C OXT sing N N 150 GLN CB CG sing N N 151 GLN CB HB2 sing N N 152 GLN CB HB3 sing N N 153 GLN CG CD sing N N 154 GLN CG HG2 sing N N 155 GLN CG HG3 sing N N 156 GLN CD OE1 doub N N 157 GLN CD NE2 sing N N 158 GLN NE2 HE21 sing N N 159 GLN NE2 HE22 sing N N 160 GLN OXT HXT sing N N 161 GLU N CA sing N N 162 GLU N H sing N N 163 GLU N H2 sing N N 164 GLU CA C sing N N 165 GLU CA CB sing N N 166 GLU CA HA sing N N 167 GLU C O doub N N 168 GLU C OXT sing N N 169 GLU CB CG sing N N 170 GLU CB HB2 sing N N 171 GLU CB HB3 sing N N 172 GLU CG CD sing N N 173 GLU CG HG2 sing N N 174 GLU CG HG3 sing N N 175 GLU CD OE1 doub N N 176 GLU CD OE2 sing N N 177 GLU OE2 HE2 sing N N 178 GLU OXT HXT sing N N 179 GLY N CA sing N N 180 GLY N H sing N N 181 GLY N H2 sing N N 182 GLY CA C sing N N 183 GLY CA HA2 sing N N 184 GLY CA HA3 sing N N 185 GLY C O doub N N 186 GLY C OXT sing N N 187 GLY OXT HXT sing N N 188 HIS N CA sing N N 189 HIS N H sing N N 190 HIS N H2 sing N N 191 HIS CA C sing N N 192 HIS CA CB sing N N 193 HIS CA HA sing N N 194 HIS C O doub N N 195 HIS C OXT sing N N 196 HIS CB CG sing N N 197 HIS CB HB2 sing N N 198 HIS CB HB3 sing N N 199 HIS CG ND1 sing Y N 200 HIS CG CD2 doub Y N 201 HIS ND1 CE1 doub Y N 202 HIS ND1 HD1 sing N N 203 HIS CD2 NE2 sing Y N 204 HIS CD2 HD2 sing N N 205 HIS CE1 NE2 sing Y N 206 HIS CE1 HE1 sing N N 207 HIS NE2 HE2 sing N N 208 HIS OXT HXT sing N N 209 HOH O H1 sing N N 210 HOH O H2 sing N N 211 ILE N CA sing N N 212 ILE N H sing N N 213 ILE N H2 sing N N 214 ILE CA C sing N N 215 ILE CA CB sing N N 216 ILE CA HA sing N N 217 ILE C O doub N N 218 ILE C OXT sing N N 219 ILE CB CG1 sing N N 220 ILE CB CG2 sing N N 221 ILE CB HB sing N N 222 ILE CG1 CD1 sing N N 223 ILE CG1 HG12 sing N N 224 ILE CG1 HG13 sing N N 225 ILE CG2 HG21 sing N N 226 ILE CG2 HG22 sing N N 227 ILE CG2 HG23 sing N N 228 ILE CD1 HD11 sing N N 229 ILE CD1 HD12 sing N N 230 ILE CD1 HD13 sing N N 231 ILE OXT HXT sing N N 232 LEU N CA sing N N 233 LEU N H sing N N 234 LEU N H2 sing N N 235 LEU CA C sing N N 236 LEU CA CB sing N N 237 LEU CA HA sing N N 238 LEU C O doub N N 239 LEU C OXT sing N N 240 LEU CB CG sing N N 241 LEU CB HB2 sing N N 242 LEU CB HB3 sing N N 243 LEU CG CD1 sing N N 244 LEU CG CD2 sing N N 245 LEU CG HG sing N N 246 LEU CD1 HD11 sing N N 247 LEU CD1 HD12 sing N N 248 LEU CD1 HD13 sing N N 249 LEU CD2 HD21 sing N N 250 LEU CD2 HD22 sing N N 251 LEU CD2 HD23 sing N N 252 LEU OXT HXT sing N N 253 LYS N CA sing N N 254 LYS N H sing N N 255 LYS N H2 sing N N 256 LYS CA C sing N N 257 LYS CA CB sing N N 258 LYS CA HA sing N N 259 LYS C O doub N N 260 LYS C OXT sing N N 261 LYS CB CG sing N N 262 LYS CB HB2 sing N N 263 LYS CB HB3 sing N N 264 LYS CG CD sing N N 265 LYS CG HG2 sing N N 266 LYS CG HG3 sing N N 267 LYS CD CE sing N N 268 LYS CD HD2 sing N N 269 LYS CD HD3 sing N N 270 LYS CE NZ sing N N 271 LYS CE HE2 sing N N 272 LYS CE HE3 sing N N 273 LYS NZ HZ1 sing N N 274 LYS NZ HZ2 sing N N 275 LYS NZ HZ3 sing N N 276 LYS OXT HXT sing N N 277 MET N CA sing N N 278 MET N H sing N N 279 MET N H2 sing N N 280 MET CA C sing N N 281 MET CA CB sing N N 282 MET CA HA sing N N 283 MET C O doub N N 284 MET C OXT sing N N 285 MET CB CG sing N N 286 MET CB HB2 sing N N 287 MET CB HB3 sing N N 288 MET CG SD sing N N 289 MET CG HG2 sing N N 290 MET CG HG3 sing N N 291 MET SD CE sing N N 292 MET CE HE1 sing N N 293 MET CE HE2 sing N N 294 MET CE HE3 sing N N 295 MET OXT HXT sing N N 296 PHE N CA sing N N 297 PHE N H sing N N 298 PHE N H2 sing N N 299 PHE CA C sing N N 300 PHE CA CB sing N N 301 PHE CA HA sing N N 302 PHE C O doub N N 303 PHE C OXT sing N N 304 PHE CB CG sing N N 305 PHE CB HB2 sing N N 306 PHE CB HB3 sing N N 307 PHE CG CD1 doub Y N 308 PHE CG CD2 sing Y N 309 PHE CD1 CE1 sing Y N 310 PHE CD1 HD1 sing N N 311 PHE CD2 CE2 doub Y N 312 PHE CD2 HD2 sing N N 313 PHE CE1 CZ doub Y N 314 PHE CE1 HE1 sing N N 315 PHE CE2 CZ sing Y N 316 PHE CE2 HE2 sing N N 317 PHE CZ HZ sing N N 318 PHE OXT HXT sing N N 319 PRO N CA sing N N 320 PRO N CD sing N N 321 PRO N H sing N N 322 PRO CA C sing N N 323 PRO CA CB sing N N 324 PRO CA HA sing N N 325 PRO C O doub N N 326 PRO C OXT sing N N 327 PRO CB CG sing N N 328 PRO CB HB2 sing N N 329 PRO CB HB3 sing N N 330 PRO CG CD sing N N 331 PRO CG HG2 sing N N 332 PRO CG HG3 sing N N 333 PRO CD HD2 sing N N 334 PRO CD HD3 sing N N 335 PRO OXT HXT sing N N 336 SER N CA sing N N 337 SER N H sing N N 338 SER N H2 sing N N 339 SER CA C sing N N 340 SER CA CB sing N N 341 SER CA HA sing N N 342 SER C O doub N N 343 SER C OXT sing N N 344 SER CB OG sing N N 345 SER CB HB2 sing N N 346 SER CB HB3 sing N N 347 SER OG HG sing N N 348 SER OXT HXT sing N N 349 TDR N1 C2 sing N N 350 TDR N1 C6 sing N N 351 TDR N1 HN1 sing N N 352 TDR C2 O2 doub N N 353 TDR C2 N3 sing N N 354 TDR N3 C4 sing N N 355 TDR N3 HN3 sing N N 356 TDR C4 O4 doub N N 357 TDR C4 C5 sing N N 358 TDR C5 CM5 sing N N 359 TDR C5 C6 doub N N 360 TDR CM5 H5M1 sing N N 361 TDR CM5 H5M2 sing N N 362 TDR CM5 H5M3 sing N N 363 TDR C6 H6 sing N N 364 THR N CA sing N N 365 THR N H sing N N 366 THR N H2 sing N N 367 THR CA C sing N N 368 THR CA CB sing N N 369 THR CA HA sing N N 370 THR C O doub N N 371 THR C OXT sing N N 372 THR CB OG1 sing N N 373 THR CB CG2 sing N N 374 THR CB HB sing N N 375 THR OG1 HG1 sing N N 376 THR CG2 HG21 sing N N 377 THR CG2 HG22 sing N N 378 THR CG2 HG23 sing N N 379 THR OXT HXT sing N N 380 TRP N CA sing N N 381 TRP N H sing N N 382 TRP N H2 sing N N 383 TRP CA C sing N N 384 TRP CA CB sing N N 385 TRP CA HA sing N N 386 TRP C O doub N N 387 TRP C OXT sing N N 388 TRP CB CG sing N N 389 TRP CB HB2 sing N N 390 TRP CB HB3 sing N N 391 TRP CG CD1 doub Y N 392 TRP CG CD2 sing Y N 393 TRP CD1 NE1 sing Y N 394 TRP CD1 HD1 sing N N 395 TRP CD2 CE2 doub Y N 396 TRP CD2 CE3 sing Y N 397 TRP NE1 CE2 sing Y N 398 TRP NE1 HE1 sing N N 399 TRP CE2 CZ2 sing Y N 400 TRP CE3 CZ3 doub Y N 401 TRP CE3 HE3 sing N N 402 TRP CZ2 CH2 doub Y N 403 TRP CZ2 HZ2 sing N N 404 TRP CZ3 CH2 sing Y N 405 TRP CZ3 HZ3 sing N N 406 TRP CH2 HH2 sing N N 407 TRP OXT HXT sing N N 408 TYD PA O1A doub N N 409 TYD PA O2A sing N N 410 TYD PA O3A sing N N 411 TYD PA "O5'" sing N N 412 TYD O2A HOA2 sing N N 413 TYD O3A PB sing N N 414 TYD PB O1B doub N N 415 TYD PB O2B sing N N 416 TYD PB O3B sing N N 417 TYD O2B HOB2 sing N N 418 TYD O3B HOB3 sing N N 419 TYD "O5'" "C5'" sing N N 420 TYD "C5'" "C4'" sing N N 421 TYD "C5'" "H5'1" sing N N 422 TYD "C5'" "H5'2" sing N N 423 TYD "C4'" "O4'" sing N N 424 TYD "C4'" "C3'" sing N N 425 TYD "C4'" "H4'" sing N N 426 TYD "O4'" "C1'" sing N N 427 TYD "C3'" "O3'" sing N N 428 TYD "C3'" "C2'" sing N N 429 TYD "C3'" "H3'" sing N N 430 TYD "O3'" "HO3'" sing N N 431 TYD "C2'" "C1'" sing N N 432 TYD "C2'" "H2'1" sing N N 433 TYD "C2'" "H2'2" sing N N 434 TYD "C1'" N1 sing N N 435 TYD "C1'" "H1'" sing N N 436 TYD N1 C2 sing Y N 437 TYD N1 C6 sing Y N 438 TYD C2 O2 doub N N 439 TYD C2 N3 sing Y N 440 TYD N3 C4 sing Y N 441 TYD N3 HN3 sing N N 442 TYD C4 O4 doub N N 443 TYD C4 C5 sing Y N 444 TYD C5 C5M sing N N 445 TYD C5 C6 doub Y N 446 TYD C5M H51 sing N N 447 TYD C5M H52 sing N N 448 TYD C5M H53 sing N N 449 TYD C6 H6 sing N N 450 TYR N CA sing N N 451 TYR N H sing N N 452 TYR N H2 sing N N 453 TYR CA C sing N N 454 TYR CA CB sing N N 455 TYR CA HA sing N N 456 TYR C O doub N N 457 TYR C OXT sing N N 458 TYR CB CG sing N N 459 TYR CB HB2 sing N N 460 TYR CB HB3 sing N N 461 TYR CG CD1 doub Y N 462 TYR CG CD2 sing Y N 463 TYR CD1 CE1 sing Y N 464 TYR CD1 HD1 sing N N 465 TYR CD2 CE2 doub Y N 466 TYR CD2 HD2 sing N N 467 TYR CE1 CZ doub Y N 468 TYR CE1 HE1 sing N N 469 TYR CE2 CZ sing Y N 470 TYR CE2 HE2 sing N N 471 TYR CZ OH sing N N 472 TYR OH HH sing N N 473 TYR OXT HXT sing N N 474 VAL N CA sing N N 475 VAL N H sing N N 476 VAL N H2 sing N N 477 VAL CA C sing N N 478 VAL CA CB sing N N 479 VAL CA HA sing N N 480 VAL C O doub N N 481 VAL C OXT sing N N 482 VAL CB CG1 sing N N 483 VAL CB CG2 sing N N 484 VAL CB HB sing N N 485 VAL CG1 HG11 sing N N 486 VAL CG1 HG12 sing N N 487 VAL CG1 HG13 sing N N 488 VAL CG2 HG21 sing N N 489 VAL CG2 HG22 sing N N 490 VAL CG2 HG23 sing N N 491 VAL OXT HXT sing N N 492 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "THYMIDINE-5'-DIPHOSPHATE" TYD 3 THYMINE TDR 4 '(2S)-1-[3-[(2S)-2-oxidanylpropoxy]-2-[[(2S)-2-oxidanylpropoxy]methyl]-2-[[(2R)-2-oxidanylpropoxy]methyl]propoxy]propan-2-ol' 4TD 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2PA7 _pdbx_initial_refinement_model.details 'PDB entry 2PA7' #