HEADER ISOMERASE 02-JAN-14 4O9E TITLE CRYSTAL STRUCTURE OF QDTA, A SUGAR 3,4-KETOISEMERASE FROM TITLE 2 THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM IN COMPLEX WITH TDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: QDTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3,4-KETOISOMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTERIUM THERMOSACCHAROLYTICUM; SOURCE 3 ORGANISM_TAXID: 1517; SOURCE 4 STRAIN: E207-71; SOURCE 5 GENE: QDTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET31 KEYWDS CUPIN, 3, 4-KETOISOMERASE, TDP-SUGAR BINDING, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN REVDAT 3 20-SEP-23 4O9E 1 REMARK SEQADV REVDAT 2 11-JUN-14 4O9E 1 JRNL REVDAT 1 09-APR-14 4O9E 0 JRNL AUTH J.B.THODEN,H.M.HOLDEN JRNL TITL THE MOLECULAR ARCHITECTURE OF QDTA, A SUGAR JRNL TITL 2 3,4-KETOISOMERASE FROM THERMOANAEROBACTERIUM JRNL TITL 3 THERMOSACCHAROLYTICUM. JRNL REF PROTEIN SCI. V. 23 683 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24616215 JRNL DOI 10.1002/PRO.2451 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2422 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2341 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3278 ; 2.390 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5405 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 7.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;33.006 ;23.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 436 ;16.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.900 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2567 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4O9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MONTEL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 38.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-28% PENTAERYTHRITOL PROPOXYLATE, REMARK 280 100 MM HEPPS, 10 MM TDP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.89400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.89400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.89400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.89400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.89400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.89400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.89400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.89400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL DIMER IS COMPOSED OF CHAINS A+B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C1 4TD B 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 138 REMARK 465 HIS A 139 REMARK 465 HIS A 140 REMARK 465 HIS A 141 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 GLU B 138 REMARK 465 HIS B 139 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 137 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 32 O HOH A 333 2.05 REMARK 500 O HOH A 349 O HOH A 362 2.07 REMARK 500 O HOH A 305 O HOH A 333 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 15 -163.84 -160.99 REMARK 500 LYS A 26 -11.00 66.81 REMARK 500 ILE A 27 -62.14 -107.98 REMARK 500 TYR A 50 56.58 71.04 REMARK 500 ASP A 75 10.32 80.88 REMARK 500 ASN A 83 11.85 -148.20 REMARK 500 ASP B 15 -154.30 -157.93 REMARK 500 LYS B 26 -6.83 68.67 REMARK 500 ILE B 27 -67.67 -107.26 REMARK 500 ASP B 75 -4.04 87.12 REMARK 500 ASN B 83 14.50 -157.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 104 GLY B 105 -59.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDR A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4TD B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4O9G RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR STATE THE FOLLOWING: ALA 52-> SER, PHE 94 -> LEU, LEU 95 -> REMARK 999 VAL, AND CYS 116 -> TYR WE BELIEVE ARE SEQUENCING ERRORS IN THE REMARK 999 DATA BASE DEPOSITION AS PCR USING VARIOUS ENZYMES AND TECHNIQUES REMARK 999 ALWAYS GAVE GENES WITH THIS SEQUENCE AND NOT THAT DEPOSITED, AND AS REMARK 999 SUCH WE HAVE DISCUSSED THAT IN THE PAPER DBREF 4O9E A 1 136 UNP Q6TFC5 Q6TFC5_THETR 1 136 DBREF 4O9E B 1 136 UNP Q6TFC5 Q6TFC5_THETR 1 136 SEQADV 4O9E SER A 52 UNP Q6TFC5 ALA 52 SEE REMARK 999 SEQADV 4O9E LEU A 94 UNP Q6TFC5 PHE 94 SEE REMARK 999 SEQADV 4O9E VAL A 95 UNP Q6TFC5 LEU 95 SEE REMARK 999 SEQADV 4O9E TYR A 116 UNP Q6TFC5 CYS 116 SEE REMARK 999 SEQADV 4O9E LEU A 137 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E GLU A 138 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 139 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 140 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 141 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 142 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 143 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS A 144 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E SER B 52 UNP Q6TFC5 ALA 52 SEE REMARK 999 SEQADV 4O9E LEU B 94 UNP Q6TFC5 PHE 94 SEE REMARK 999 SEQADV 4O9E VAL B 95 UNP Q6TFC5 LEU 95 SEE REMARK 999 SEQADV 4O9E TYR B 116 UNP Q6TFC5 CYS 116 SEE REMARK 999 SEQADV 4O9E LEU B 137 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E GLU B 138 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 139 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 140 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 141 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 142 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 143 UNP Q6TFC5 EXPRESSION TAG SEQADV 4O9E HIS B 144 UNP Q6TFC5 EXPRESSION TAG SEQRES 1 A 144 MET LEU TYR ASN VAL ALA LEU ILE LYS PHE LYS ASP ILE SEQRES 2 A 144 ALA ASP LYS TYR GLY HIS LEU THR PRO ILE GLU GLY LYS SEQRES 3 A 144 ILE ASP ILE PRO PHE ASP ILE LYS ARG VAL TYR TYR ILE SEQRES 4 A 144 THR LYS VAL ASP LYS ASP ILE THR ARG GLY TYR HIS SER SEQRES 5 A 144 HIS LYS LYS LEU HIS GLN VAL LEU ILE CYS LEU ASN GLY SEQRES 6 A 144 SER VAL LYS ILE ARG LEU LYS ILE PRO ASP GLU GLU LYS SEQRES 7 A 144 ILE ILE GLU LEU ASN ASP PRO SER VAL GLY LEU TYR ILE SEQRES 8 A 144 GLY PRO LEU VAL TRP ARG GLU MET PHE ASP PHE THR GLU SEQRES 9 A 144 GLY CYS VAL LEU LEU VAL LEU ALA SER GLU TYR TYR ASP SEQRES 10 A 144 GLU THR ASP TYR ILE ARG ASN TYR ASP PHE TYR ILE ASP SEQRES 11 A 144 GLU ALA LYS LYS ARG PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 144 MET LEU TYR ASN VAL ALA LEU ILE LYS PHE LYS ASP ILE SEQRES 2 B 144 ALA ASP LYS TYR GLY HIS LEU THR PRO ILE GLU GLY LYS SEQRES 3 B 144 ILE ASP ILE PRO PHE ASP ILE LYS ARG VAL TYR TYR ILE SEQRES 4 B 144 THR LYS VAL ASP LYS ASP ILE THR ARG GLY TYR HIS SER SEQRES 5 B 144 HIS LYS LYS LEU HIS GLN VAL LEU ILE CYS LEU ASN GLY SEQRES 6 B 144 SER VAL LYS ILE ARG LEU LYS ILE PRO ASP GLU GLU LYS SEQRES 7 B 144 ILE ILE GLU LEU ASN ASP PRO SER VAL GLY LEU TYR ILE SEQRES 8 B 144 GLY PRO LEU VAL TRP ARG GLU MET PHE ASP PHE THR GLU SEQRES 9 B 144 GLY CYS VAL LEU LEU VAL LEU ALA SER GLU TYR TYR ASP SEQRES 10 B 144 GLU THR ASP TYR ILE ARG ASN TYR ASP PHE TYR ILE ASP SEQRES 11 B 144 GLU ALA LYS LYS ARG PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 12 B 144 HIS HET TYD A 201 25 HET TDR A 202 9 HET TYD B 201 25 HET 4TD B 202 25 HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM TDR THYMINE HETNAM 4TD (2S)-1-[3-[(2S)-2-OXIDANYLPROPOXY]-2-[[(2S)-2- HETNAM 2 4TD OXIDANYLPROPOXY]METHYL]-2-[[(2R)-2- HETNAM 3 4TD OXIDANYLPROPOXY]METHYL]PROPOXY]PROPAN-2-OL HETSYN 4TD TETRAERYTHRITOL PROPOXYLATE FORMUL 3 TYD 2(C10 H16 N2 O11 P2) FORMUL 4 TDR C5 H6 N2 O2 FORMUL 6 4TD C17 H36 O8 FORMUL 7 HOH *123(H2 O) HELIX 1 1 ASP A 117 THR A 119 5 3 HELIX 2 2 ASN A 124 LEU A 137 1 14 HELIX 3 3 ASP B 117 THR B 119 5 3 HELIX 4 4 ASN B 124 LEU B 137 1 14 SHEET 1 A 7 VAL A 5 LYS A 9 0 SHEET 2 A 7 VAL A 87 ILE A 91 -1 O GLY A 88 N ILE A 8 SHEET 3 A 7 GLN A 58 ASN A 64 -1 N LEU A 60 O LEU A 89 SHEET 4 A 7 VAL A 107 ALA A 112 -1 O LEU A 109 N ILE A 61 SHEET 5 A 7 ARG A 35 THR A 40 -1 N ILE A 39 O LEU A 108 SHEET 6 A 7 GLY B 18 GLU B 24 -1 O ILE B 23 N VAL A 36 SHEET 7 A 7 ILE B 13 ASP B 15 -1 N ILE B 13 O LEU B 20 SHEET 1 B 7 ILE A 13 ASP A 15 0 SHEET 2 B 7 GLY A 18 GLU A 24 -1 O LEU A 20 N ILE A 13 SHEET 3 B 7 ARG B 35 THR B 40 -1 O VAL B 36 N ILE A 23 SHEET 4 B 7 VAL B 107 ALA B 112 -1 O VAL B 110 N TYR B 37 SHEET 5 B 7 GLN B 58 ASN B 64 -1 N ILE B 61 O LEU B 109 SHEET 6 B 7 VAL B 87 ILE B 91 -1 O LEU B 89 N LEU B 60 SHEET 7 B 7 VAL B 5 LYS B 9 -1 N ILE B 8 O GLY B 88 SHEET 1 C 5 GLU A 76 LEU A 82 0 SHEET 2 C 5 VAL A 67 ILE A 73 -1 N VAL A 67 O LEU A 82 SHEET 3 C 5 TRP A 96 PHE A 100 -1 O GLU A 98 N ARG A 70 SHEET 4 C 5 THR A 47 HIS A 53 -1 N ARG A 48 O MET A 99 SHEET 5 C 5 TYR A 121 ILE A 122 -1 O ILE A 122 N SER A 52 SHEET 1 D 5 GLU B 76 LEU B 82 0 SHEET 2 D 5 VAL B 67 ILE B 73 -1 N ILE B 69 O ILE B 80 SHEET 3 D 5 TRP B 96 PHE B 100 -1 O GLU B 98 N ARG B 70 SHEET 4 D 5 THR B 47 HIS B 53 -1 N ARG B 48 O MET B 99 SHEET 5 D 5 TYR B 121 ILE B 122 -1 O ILE B 122 N SER B 52 SITE 1 AC1 15 ARG A 35 TYR A 37 ILE A 39 ARG A 48 SITE 2 AC1 15 GLY A 49 HIS A 51 TYR A 116 TYR A 121 SITE 3 AC1 15 ARG A 123 HOH A 310 HOH A 344 HOH A 348 SITE 4 AC1 15 HOH A 357 ILE B 13 PRO B 22 SITE 1 AC2 3 LYS A 72 GLU A 98 HOH A 367 SITE 1 AC3 13 ILE A 13 PRO A 22 ARG B 35 TYR B 37 SITE 2 AC3 13 ILE B 39 ARG B 48 GLY B 49 HIS B 51 SITE 3 AC3 13 TYR B 116 TYR B 121 ARG B 123 HOH B 320 SITE 4 AC3 13 HOH B 347 SITE 1 AC4 5 TYR A 17 LYS B 72 GLU B 98 TYR B 125 SITE 2 AC4 5 ASP B 126 CRYST1 95.788 95.788 94.679 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010562 0.00000