HEADER TRANSFERASE 03-JAN-14 4OA9 OBSLTE 31-AUG-16 4OA9 5LPV TITLE CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1160) IN COMPLEX WITH TITLE 2 AMPPNP AND MN FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BRASSINOSTEROID INSENSITIVE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 865-1160; COMPND 5 SYNONYM: ATBRI1, BRASSINOSTEROID LRR RECEPTOR KINASE; COMPND 6 EC: 2.7.10.1, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COL-0; SOURCE 6 GENE: AT4G39400, BRI1, F23K16.30; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH-HT KEYWDS KINASE, PHOSPHOTRANSFERASE, ATP BINDING, PROTEIN BINDING, KEYWDS 2 PHOSPHORYLATION, MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN REVDAT 4 31-AUG-16 4OA9 1 OBSLTE REVDAT 3 09-APR-14 4OA9 1 JRNL REVDAT 2 26-FEB-14 4OA9 1 JRNL REVDAT 1 05-FEB-14 4OA9 0 JRNL AUTH D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN JRNL TITL CRYSTAL STRUCTURES OF THE PHOSPHORYLATED BRI1 KINASE DOMAIN JRNL TITL 2 AND IMPLICATIONS FOR BRASSINOSTEROID SIGNAL INITIATION. JRNL REF PLANT J. V. 78 31 2014 JRNL REFN ISSN 0960-7412 JRNL PMID 24461462 JRNL DOI 10.1111/TPJ.12445 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 10091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SAME SET AS FOR RELATED PDB REMARK 3 4OA2 EXTENDED TO THE REMARK 3 CORRESPONDING RESOLUTION REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 742 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3550 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17000 REMARK 3 B22 (A**2) : -2.17000 REMARK 3 B33 (A**2) : 7.03000 REMARK 3 B12 (A**2) : -1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.716 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.282 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2201 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2071 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2992 ; 1.796 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4748 ; 0.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 82 ;39.690 ;23.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;16.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2452 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 2.359 ; 3.578 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 2.358 ; 3.578 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1409 ; 3.809 ; 5.358 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1410 ; 3.808 ; 5.359 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 3.034 ; 3.774 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1072 ; 3.032 ; 3.776 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1584 ; 4.593 ; 5.613 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9392 ; 9.742 ;33.656 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9390 ; 9.742 ;33.650 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 866 A 916 REMARK 3 ORIGIN FOR THE GROUP (A): 28.1891 39.9449 19.5398 REMARK 3 T TENSOR REMARK 3 T11: 0.2394 T22: 0.2189 REMARK 3 T33: 0.0830 T12: 0.1315 REMARK 3 T13: 0.0082 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 10.5512 L22: 9.8988 REMARK 3 L33: 10.5887 L12: 1.5366 REMARK 3 L13: -0.7249 L23: 0.5096 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: -0.1286 S13: 0.5206 REMARK 3 S21: -0.4148 S22: -0.0039 S23: -0.0545 REMARK 3 S31: -0.1977 S32: 0.5342 S33: -0.0394 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 917 A 982 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0530 28.8712 18.1007 REMARK 3 T TENSOR REMARK 3 T11: 0.2699 T22: 0.2923 REMARK 3 T33: 0.0293 T12: 0.0267 REMARK 3 T13: 0.0103 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 6.0036 L22: 9.7561 REMARK 3 L33: 5.1444 L12: -2.1459 REMARK 3 L13: -0.6222 L23: -1.1406 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.3371 S13: 0.2309 REMARK 3 S21: 0.2313 S22: -0.0491 S23: 0.2487 REMARK 3 S31: -0.1647 S32: 0.0670 S33: 0.0315 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 983 A 1116 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3480 19.3931 15.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.3790 T22: 0.1677 REMARK 3 T33: 0.0937 T12: 0.0537 REMARK 3 T13: -0.0161 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 9.3908 L22: 6.8462 REMARK 3 L33: 4.2069 L12: -1.8775 REMARK 3 L13: -0.5959 L23: 0.3703 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: -0.3894 S13: -0.3443 REMARK 3 S21: 0.1801 S22: 0.2237 S23: -0.6411 REMARK 3 S31: -0.0648 S32: 0.2674 S33: -0.0928 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1117 A 1160 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0252 6.2222 19.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.5401 T22: 0.5586 REMARK 3 T33: 0.4716 T12: 0.2178 REMARK 3 T13: -0.0111 T23: 0.2464 REMARK 3 L TENSOR REMARK 3 L11: 1.6110 L22: 5.6522 REMARK 3 L33: 8.6711 L12: 1.5243 REMARK 3 L13: -0.4099 L23: -0.3794 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.7562 S13: -0.6648 REMARK 3 S21: 0.6903 S22: -0.1506 S23: -0.1297 REMARK 3 S31: 1.0939 S32: 0.0939 S33: 0.1824 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10619 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.090 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 22.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.98 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.96100 REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: - REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 20K/MME 550 MORPHEUS MIX, 0.12 REMARK 280 M ETH GLYCOL MIX, 0.1 M HEPES PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.09333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.54667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.09333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.54667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 862 REMARK 465 ALA A 863 REMARK 465 MET A 864 REMARK 465 GLU A 865 REMARK 465 PRO A 1089 REMARK 465 ASP A 1090 REMARK 465 PHE A 1091 REMARK 465 GLY A 1092 REMARK 465 ASP A 1093 REMARK 465 ASN A 1094 REMARK 465 ASN A 1095 REMARK 465 LEU A 1096 REMARK 465 VAL A 1097 REMARK 465 GLY A 1098 REMARK 465 TRP A 1099 REMARK 465 VAL A 1100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 866 CG CD CE NZ REMARK 470 ASP A 886 CG OD1 OD2 REMARK 470 PHE A 894 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 919 CG CD OE1 NE2 REMARK 470 ARG A 922 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 929 CG CD OE1 OE2 REMARK 470 LYS A 933 CG CD CE NZ REMARK 470 ARG A 937 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 947 CG CD CE NZ REMARK 470 ASP A 950 CG OD1 OD2 REMARK 470 ASP A 970 CG OD1 OD2 REMARK 470 LYS A 972 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 VAL A 976 CG1 CG2 REMARK 470 LYS A 977 CG CD CE NZ REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 ARG A1084 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1101 CG CD CE NZ REMARK 470 HIS A1103 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A1107 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1108 CB CG1 CG2 CD1 REMARK 470 ASP A1110 CG OD1 OD2 REMARK 470 PHE A1112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1115 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1027 71.16 66.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A1200 N3B REMARK 620 2 ANP A1200 O2A 99.3 REMARK 620 3 ASN A1014 OD1 171.4 79.8 REMARK 620 4 ASP A1027 OD2 85.2 85.8 86.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A1200 O2B REMARK 620 2 ASP A1027 OD1 72.2 REMARK 620 3 ASP A1027 OD2 69.0 51.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OA2 RELATED DB: PDB REMARK 900 BRI1 KINASE DOMAIN (865-1196) IN COMPLEX WITH ADP REMARK 900 RELATED ID: 4OA6 RELATED DB: PDB REMARK 900 BRI1 KINASE DOMAIN (865-1160) IN ITS APO FORM REMARK 900 RELATED ID: 4OAC RELATED DB: PDB REMARK 900 RELATED ID: 4OAB RELATED DB: PDB DBREF 4OA9 A 865 1160 UNP O22476 BRI1_ARATH 865 1160 SEQADV 4OA9 GLY A 862 UNP O22476 EXPRESSION TAG SEQADV 4OA9 ALA A 863 UNP O22476 EXPRESSION TAG SEQADV 4OA9 MET A 864 UNP O22476 EXPRESSION TAG SEQADV 4OA9 ALA A 872 UNP O22476 THR 872 ENGINEERED MUTATION SEQRES 1 A 299 GLY ALA MET GLU LYS PRO LEU ARG LYS LEU ALA PHE ALA SEQRES 2 A 299 ASP LEU LEU GLN ALA THR ASN GLY PHE HIS ASN ASP SER SEQRES 3 A 299 LEU ILE GLY SER GLY GLY PHE GLY ASP VAL TYR LYS ALA SEQRES 4 A 299 ILE LEU LYS ASP GLY SER ALA VAL ALA ILE LYS LYS LEU SEQRES 5 A 299 ILE HIS VAL SER GLY GLN GLY ASP ARG GLU PHE MET ALA SEQRES 6 A 299 GLU MET GLU THR ILE GLY LYS ILE LYS HIS ARG ASN LEU SEQRES 7 A 299 VAL PRO LEU LEU GLY TYR CYS LYS VAL GLY ASP GLU ARG SEQRES 8 A 299 LEU LEU VAL TYR GLU PHE MET LYS TYR GLY SER LEU GLU SEQRES 9 A 299 ASP VAL LEU HIS ASP PRO LYS LYS ALA GLY VAL LYS LEU SEQRES 10 A 299 ASN TRP SER THR ARG ARG LYS ILE ALA ILE GLY SER ALA SEQRES 11 A 299 ARG GLY LEU ALA PHE LEU HIS HIS ASN CYS SER PRO HIS SEQRES 12 A 299 ILE ILE HIS ARG ASP MET LYS SER SER ASN VAL LEU LEU SEQRES 13 A 299 ASP GLU ASN LEU GLU ALA ARG VAL SER ASP PHE GLY MET SEQRES 14 A 299 ALA ARG LEU MET SER ALA MET ASP TPO HIS LEU SEP VAL SEQRES 15 A 299 SEP THR LEU ALA GLY THR PRO GLY TYR VAL PRO PRO GLU SEQRES 16 A 299 TYR TYR GLN SER PHE ARG CYS SER THR LYS GLY ASP VAL SEQRES 17 A 299 TYR SER TYR GLY VAL VAL LEU LEU GLU LEU LEU THR GLY SEQRES 18 A 299 LYS ARG PRO THR ASP SER PRO ASP PHE GLY ASP ASN ASN SEQRES 19 A 299 LEU VAL GLY TRP VAL LYS GLN HIS ALA LYS LEU ARG ILE SEQRES 20 A 299 SER ASP VAL PHE ASP PRO GLU LEU MET LYS GLU ASP PRO SEQRES 21 A 299 ALA LEU GLU ILE GLU LEU LEU GLN HIS LEU LYS VAL ALA SEQRES 22 A 299 VAL ALA CYS LEU ASP ASP ARG ALA TRP ARG ARG PRO THR SEQRES 23 A 299 MET VAL GLN VAL MET ALA MET PHE LYS GLU ILE GLN ALA MODRES 4OA9 TPO A 1039 THR PHOSPHOTHREONINE MODRES 4OA9 SEP A 1042 SER PHOSPHOSERINE MODRES 4OA9 SEP A 1044 SER PHOSPHOSERINE HET TPO A1039 11 HET SEP A1042 10 HET SEP A1044 10 HET ANP A1200 31 HET MN A1201 1 HET MN A1202 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *15(H2 O) HELIX 1 1 ALA A 872 THR A 880 1 9 HELIX 2 2 HIS A 884 ASP A 886 5 3 HELIX 3 3 GLY A 918 ILE A 931 1 14 HELIX 4 4 SER A 963 HIS A 969 1 7 HELIX 5 5 ASP A 970 ALA A 974 5 5 HELIX 6 6 ASN A 979 ASN A 1000 1 22 HELIX 7 7 LYS A 1011 SER A 1013 5 3 HELIX 8 8 PRO A 1054 TYR A 1058 5 5 HELIX 9 9 SER A 1064 GLY A 1082 1 19 HELIX 10 10 GLN A 1102 SER A 1109 1 8 HELIX 11 11 ASP A 1110 PHE A 1112 5 3 HELIX 12 12 ILE A 1125 LEU A 1138 1 14 HELIX 13 13 ARG A 1141 ARG A 1145 5 5 HELIX 14 14 THR A 1147 GLN A 1159 1 13 SHEET 1 A 6 ARG A 869 LYS A 870 0 SHEET 2 A 6 LEU A 942 VAL A 948 1 O LEU A 943 N ARG A 869 SHEET 3 A 6 GLU A 951 GLU A 957 -1 O GLU A 951 N VAL A 948 SHEET 4 A 6 ALA A 907 LEU A 913 -1 N LYS A 911 O LEU A 954 SHEET 5 A 6 GLY A 895 ILE A 901 -1 N ASP A 896 O LYS A 912 SHEET 6 A 6 LEU A 888 GLY A 890 -1 N GLY A 890 O VAL A 897 SHEET 1 B 2 HIS A1004 ILE A1006 0 SHEET 2 B 2 ARG A1032 MET A1034 -1 O MET A1034 N HIS A1004 SHEET 1 C 2 VAL A1015 LEU A1017 0 SHEET 2 C 2 ALA A1023 VAL A1025 -1 O ARG A1024 N LEU A1016 SHEET 1 D 2 LEU A1041 SEP A1042 0 SHEET 2 D 2 ARG A1062 CYS A1063 -1 O CYS A1063 N LEU A1041 LINK C ASP A1038 N TPO A1039 1555 1555 1.32 LINK C TPO A1039 N HIS A1040 1555 1555 1.33 LINK C LEU A1041 N SEP A1042 1555 1555 1.33 LINK C SEP A1042 N VAL A1043 1555 1555 1.32 LINK C VAL A1043 N SEP A1044 1555 1555 1.33 LINK C SEP A1044 N THR A1045 1555 1555 1.33 LINK N3B ANP A1200 MN MN A1201 1555 1555 1.81 LINK O2A ANP A1200 MN MN A1201 1555 1555 1.93 LINK O2B ANP A1200 MN MN A1202 1555 1555 2.29 LINK OD1 ASN A1014 MN MN A1201 1555 1555 2.34 LINK OD2 ASP A1027 MN MN A1201 1555 1555 2.34 LINK OD1 ASP A1027 MN MN A1202 1555 1555 2.46 LINK OD2 ASP A1027 MN MN A1202 1555 1555 2.62 CISPEP 1 SER A 1002 PRO A 1003 0 0.81 SITE 1 AC1 18 PHE A 894 ALA A 909 LYS A 911 GLU A 957 SITE 2 AC1 18 MET A 959 SER A 963 ASP A 966 ASP A1009 SITE 3 AC1 18 LYS A1011 SER A1013 ASN A1014 LEU A1016 SITE 4 AC1 18 ASP A1027 MN A1201 MN A1202 HOH A1311 SITE 5 AC1 18 HOH A1314 HOH A1315 SITE 1 AC2 5 LYS A1011 SER A1013 ASN A1014 ASP A1027 SITE 2 AC2 5 ANP A1200 SITE 1 AC3 2 ASP A1027 ANP A1200 CRYST1 115.630 115.630 49.640 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008648 0.004993 0.000000 0.00000 SCALE2 0.000000 0.009986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020145 0.00000