HEADER TRANSFERASE 03-JAN-14 4OAB OBSLTE 24-AUG-16 4OAB 5LPY TITLE CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1160) IN COMPLEX WITH TITLE 2 ATP FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BRASSINOSTEROID INSENSITIVE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 865-1160; COMPND 5 SYNONYM: ATBRI1, BRASSINOSTEROID LRR RECEPTOR KINASE; COMPND 6 EC: 2.7.10.1, 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 STRAIN: COL-0; SOURCE 6 GENE: AT4G39400, BRI1, F23K16.30; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH-HT KEYWDS KINASE, PHOSPHOTRANSFERASE, ATP BINDING PROTEIN BINDING, KEYWDS 2 PHOSPHORYLATION, MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN REVDAT 4 24-AUG-16 4OAB 1 OBSLTE REVDAT 3 09-APR-14 4OAB 1 JRNL REVDAT 2 26-FEB-14 4OAB 1 JRNL REVDAT 1 05-FEB-14 4OAB 0 JRNL AUTH D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN JRNL TITL CRYSTAL STRUCTURES OF THE PHOSPHORYLATED BRI1 KINASE DOMAIN JRNL TITL 2 AND IMPLICATIONS FOR BRASSINOSTEROID SIGNAL INITIATION. JRNL REF PLANT J. V. 78 31 2014 JRNL REFN ISSN 0960-7412 JRNL PMID 24461462 JRNL DOI 10.1111/TPJ.12445 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : SAME SET AS FOR RELATED PDB REMARK 3 4OA2 EXTENDED TO THE REMARK 3 CORRESPONDING RESOLUTION REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : -1.02000 REMARK 3 B33 (A**2) : 3.32000 REMARK 3 B12 (A**2) : -0.51000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.259 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.964 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2142 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3045 ; 1.795 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4914 ; 0.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;33.693 ;22.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 378 ;16.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2476 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 3.319 ; 4.553 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1129 ; 3.318 ; 4.553 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1409 ; 4.646 ; 6.825 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1410 ; 4.645 ; 6.826 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 4.969 ; 4.946 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1116 ; 4.967 ; 4.948 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1637 ; 6.746 ; 7.328 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9429 ; 9.993 ;43.740 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9429 ; 9.993 ;43.742 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 866 A 917 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5420 40.1075 19.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1625 REMARK 3 T33: 0.2817 T12: 0.1066 REMARK 3 T13: 0.0286 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 6.3241 L22: 5.8522 REMARK 3 L33: 8.1838 L12: 1.0140 REMARK 3 L13: -2.2993 L23: -0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.2353 S12: -0.1373 S13: 0.6104 REMARK 3 S21: -0.1881 S22: 0.0356 S23: -0.2137 REMARK 3 S31: -0.1744 S32: 0.5695 S33: -0.2709 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 918 A 981 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9291 28.7150 17.7854 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.1472 REMARK 3 T33: 0.0611 T12: 0.0469 REMARK 3 T13: 0.0240 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 4.1771 L22: 7.4166 REMARK 3 L33: 3.9948 L12: -0.9423 REMARK 3 L13: -0.6167 L23: -1.4716 REMARK 3 S TENSOR REMARK 3 S11: -0.0039 S12: -0.2845 S13: 0.1795 REMARK 3 S21: 0.1886 S22: 0.0138 S23: 0.1592 REMARK 3 S31: -0.1021 S32: 0.2102 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 982 A 1082 REMARK 3 ORIGIN FOR THE GROUP (A): 42.4074 20.3720 13.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.0217 REMARK 3 T33: 0.0202 T12: 0.0388 REMARK 3 T13: -0.0256 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 7.0813 L22: 4.9483 REMARK 3 L33: 5.0811 L12: -0.4917 REMARK 3 L13: -0.9556 L23: 0.0698 REMARK 3 S TENSOR REMARK 3 S11: -0.1682 S12: -0.0149 S13: -0.1276 REMARK 3 S21: 0.0196 S22: 0.2143 S23: -0.2263 REMARK 3 S31: -0.0745 S32: 0.0954 S33: -0.0462 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1083 A 1160 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9406 8.6570 22.1797 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.3455 REMARK 3 T33: 0.4011 T12: 0.1507 REMARK 3 T13: -0.0380 T23: 0.1639 REMARK 3 L TENSOR REMARK 3 L11: 4.0268 L22: 3.7953 REMARK 3 L33: 8.2116 L12: 0.9170 REMARK 3 L13: -1.5272 L23: 0.1647 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -1.0814 S13: -0.8661 REMARK 3 S21: 0.8920 S22: 0.0790 S23: -0.4088 REMARK 3 S31: 0.2461 S32: 0.5659 S33: -0.0035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 34.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.19000 REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 20K/MME 550 MORPHEUS MIX, 0.12 REMARK 280 M ETH GLYCOL MIX, 0.1 M HEPES PH 7.5 SOAKED WITH 30 MM ATP IN REMARK 280 XTAL CONDITION (AROUND 3 MIN), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.63267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.26533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.63267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 862 REMARK 465 ALA A 863 REMARK 465 MET A 864 REMARK 465 GLU A 865 REMARK 465 PRO A 1089 REMARK 465 ASP A 1090 REMARK 465 PHE A 1091 REMARK 465 GLY A 1092 REMARK 465 ASP A 1093 REMARK 465 ASN A 1094 REMARK 465 ASN A 1095 REMARK 465 LEU A 1096 REMARK 465 VAL A 1097 REMARK 465 GLY A 1098 REMARK 465 TRP A 1099 REMARK 465 VAL A 1100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 866 CG CD CE NZ REMARK 470 ASP A 886 CG OD1 OD2 REMARK 470 GLN A 919 CG CD OE1 NE2 REMARK 470 GLU A 929 CG CD OE1 OE2 REMARK 470 LYS A 947 CG CD CE NZ REMARK 470 ASP A 950 CG OD1 OD2 REMARK 470 ASP A 970 CG OD1 OD2 REMARK 470 LYS A 972 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 VAL A 976 CG1 CG2 REMARK 470 LYS A 977 CG CD CE NZ REMARK 470 THR A1086 OG1 CG2 REMARK 470 HIS A1103 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A1108 CB CG1 CG2 CD1 REMARK 470 ASP A1110 CG OD1 OD2 REMARK 470 PHE A1112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A1115 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3P SEP A 1060 NH1 ARG A 1062 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 930 -83.00 -115.82 REMARK 500 ARG A1008 -3.80 81.17 REMARK 500 ASP A1009 43.81 -152.01 REMARK 500 ASP A1027 77.68 60.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OA2 RELATED DB: PDB REMARK 900 BRI1 KINASE DOMAIN (865-1196) IN COMPLEX WITH ADP REMARK 900 RELATED ID: 4OA6 RELATED DB: PDB REMARK 900 BRI1 KINASE DOMAIN (865-1160) IN ITS APO FORM REMARK 900 RELATED ID: 4OA9 RELATED DB: PDB REMARK 900 BRI1 KINASE DOMAIN (865-1160) IN COMPLEX WITH AMPPNP AND MN REMARK 900 RELATED ID: 4OAC RELATED DB: PDB DBREF 4OAB A 865 1160 UNP O22476 BRI1_ARATH 865 1160 SEQADV 4OAB GLY A 862 UNP O22476 EXPRESSION TAG SEQADV 4OAB ALA A 863 UNP O22476 EXPRESSION TAG SEQADV 4OAB MET A 864 UNP O22476 EXPRESSION TAG SEQADV 4OAB ALA A 872 UNP O22476 THR 872 ENGINEERED MUTATION SEQRES 1 A 299 GLY ALA MET GLU LYS PRO LEU ARG LYS LEU ALA PHE ALA SEQRES 2 A 299 ASP LEU LEU GLN ALA THR ASN GLY PHE HIS ASN ASP SER SEQRES 3 A 299 LEU ILE GLY SER GLY GLY PHE GLY ASP VAL TYR LYS ALA SEQRES 4 A 299 ILE LEU LYS ASP GLY SER ALA VAL ALA ILE LYS LYS LEU SEQRES 5 A 299 ILE HIS VAL SER GLY GLN GLY ASP ARG GLU PHE MET ALA SEQRES 6 A 299 GLU MET GLU THR ILE GLY LYS ILE LYS HIS ARG ASN LEU SEQRES 7 A 299 VAL PRO LEU LEU GLY TYR CYS LYS VAL GLY ASP GLU ARG SEQRES 8 A 299 LEU LEU VAL TYR GLU PHE MET LYS TYR GLY SER LEU GLU SEQRES 9 A 299 ASP VAL LEU HIS ASP PRO LYS LYS ALA GLY VAL LYS LEU SEQRES 10 A 299 ASN TRP SER THR ARG ARG LYS ILE ALA ILE GLY SER ALA SEQRES 11 A 299 ARG GLY LEU ALA PHE LEU HIS HIS ASN CYS SER PRO HIS SEQRES 12 A 299 ILE ILE HIS ARG ASP MET LYS SER SER ASN VAL LEU LEU SEQRES 13 A 299 ASP GLU ASN LEU GLU ALA ARG VAL SER ASP PHE GLY MET SEQRES 14 A 299 ALA ARG LEU MET SER ALA MET ASP TPO HIS LEU SEP VAL SEQRES 15 A 299 SEP THR LEU ALA GLY THR PRO GLY TYR VAL PRO PRO GLU SEQRES 16 A 299 TYR TYR GLN SEP PHE ARG CYS SER THR LYS GLY ASP VAL SEQRES 17 A 299 TYR SER TYR GLY VAL VAL LEU LEU GLU LEU LEU THR GLY SEQRES 18 A 299 LYS ARG PRO THR ASP SER PRO ASP PHE GLY ASP ASN ASN SEQRES 19 A 299 LEU VAL GLY TRP VAL LYS GLN HIS ALA LYS LEU ARG ILE SEQRES 20 A 299 SER ASP VAL PHE ASP PRO GLU LEU MET LYS GLU ASP PRO SEQRES 21 A 299 ALA LEU GLU ILE GLU LEU LEU GLN HIS LEU LYS VAL ALA SEQRES 22 A 299 VAL ALA CYS LEU ASP ASP ARG ALA TRP ARG ARG PRO THR SEQRES 23 A 299 MET VAL GLN VAL MET ALA MET PHE LYS GLU ILE GLN ALA MODRES 4OAB TPO A 1039 THR PHOSPHOTHREONINE MODRES 4OAB SEP A 1042 SER PHOSPHOSERINE MODRES 4OAB SEP A 1044 SER PHOSPHOSERINE MODRES 4OAB SEP A 1060 SER PHOSPHOSERINE HET TPO A1039 11 HET SEP A1042 10 HET SEP A1044 10 HET SEP A1060 10 HET ATP A1200 31 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 HOH *16(H2 O) HELIX 1 1 ALA A 872 THR A 880 1 9 HELIX 2 2 HIS A 884 ASP A 886 5 3 HELIX 3 3 GLY A 918 THR A 930 1 13 HELIX 4 4 ILE A 931 ILE A 934 5 4 HELIX 5 5 SER A 963 HIS A 969 1 7 HELIX 6 6 ASP A 970 ALA A 974 5 5 HELIX 7 7 ASN A 979 HIS A 999 1 21 HELIX 8 8 LYS A 1011 SER A 1013 5 3 HELIX 9 9 PRO A 1054 GLN A 1059 5 6 HELIX 10 10 SER A 1064 GLY A 1082 1 19 HELIX 11 11 GLN A 1102 SER A 1109 1 8 HELIX 12 12 PHE A 1112 LEU A 1116 5 5 HELIX 13 13 ILE A 1125 LEU A 1138 1 14 HELIX 14 14 ARG A 1141 ARG A 1145 5 5 HELIX 15 15 THR A 1147 ALA A 1160 1 14 SHEET 1 A 6 ARG A 869 LYS A 870 0 SHEET 2 A 6 LEU A 942 VAL A 948 1 O LEU A 943 N ARG A 869 SHEET 3 A 6 GLU A 951 GLU A 957 -1 O VAL A 955 N GLY A 944 SHEET 4 A 6 ALA A 907 LEU A 913 -1 N LEU A 913 O ARG A 952 SHEET 5 A 6 GLY A 895 ILE A 901 -1 N ASP A 896 O LYS A 912 SHEET 6 A 6 LEU A 888 GLY A 890 -1 N ILE A 889 O VAL A 897 SHEET 1 B 2 HIS A1004 ILE A1006 0 SHEET 2 B 2 ARG A1032 MET A1034 -1 O ARG A1032 N ILE A1006 SHEET 1 C 2 VAL A1015 LEU A1017 0 SHEET 2 C 2 ALA A1023 VAL A1025 -1 O ARG A1024 N LEU A1016 SHEET 1 D 2 LEU A1041 SEP A1042 0 SHEET 2 D 2 ARG A1062 CYS A1063 -1 O CYS A1063 N LEU A1041 LINK C ASP A1038 N TPO A1039 1555 1555 1.32 LINK C TPO A1039 N HIS A1040 1555 1555 1.33 LINK C LEU A1041 N SEP A1042 1555 1555 1.32 LINK C SEP A1042 N VAL A1043 1555 1555 1.31 LINK C VAL A1043 N SEP A1044 1555 1555 1.33 LINK C SEP A1044 N THR A1045 1555 1555 1.33 LINK C GLN A1059 N SEP A1060 1555 1555 1.32 LINK C SEP A1060 N PHE A1061 1555 1555 1.32 CISPEP 1 SER A 1002 PRO A 1003 0 -0.48 SITE 1 AC1 16 PHE A 894 ALA A 909 LYS A 911 TYR A 956 SITE 2 AC1 16 GLU A 957 PHE A 958 MET A 959 SER A 963 SITE 3 AC1 16 ASP A 966 LYS A1011 SER A1013 ASN A1014 SITE 4 AC1 16 LEU A1016 ASP A1027 HOH A1307 HOH A1310 CRYST1 115.823 115.823 49.898 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008634 0.004985 0.000000 0.00000 SCALE2 0.000000 0.009970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020041 0.00000