HEADER TRANSFERASE 04-JAN-14 4OAI TITLE CRYSTAL STRUCTURE OF THE CYTOSOLIC DOMAIN OF MOUSE MID51 DIMER MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL DYNAMIC PROTEIN MID51; COMPND 3 CHAIN: Z; COMPND 4 FRAGMENT: CYTOSOLIC DOMAIN, UNP RESIDUES 134-463; COMPND 5 SYNONYM: MITOCHONDRIAL DYNAMIC PROTEIN OF 51 KDA HOMOLOG, COMPND 6 MITOCHONDRIAL ELONGATION FACTOR 1, SMITH-MAGENIS SYNDROME CHROMOSOMAL COMPND 7 REGION CANDIDATE GENE 7 PROTEIN-LIKE; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MID51, MID51 (AKA SMCR7L), MIEF1, SMCR7L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS NUCLEOTIDYL TRANSFERASE FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.C.LOSON,J.T.KAISER,D.C.CHAN REVDAT 3 28-FEB-24 4OAI 1 REMARK SEQADV REVDAT 2 26-MAR-14 4OAI 1 JRNL REVDAT 1 22-JAN-14 4OAI 0 JRNL AUTH O.C.LOSON,R.LIU,M.E.ROME,S.MENG,J.T.KAISER,S.O.SHAN,D.C.CHAN JRNL TITL THE MITOCHONDRIAL FISSION RECEPTOR MID51 REQUIRES ADP AS A JRNL TITL 2 COFACTOR. JRNL REF STRUCTURE V. 22 367 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24508339 JRNL DOI 10.1016/J.STR.2014.01.001 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5552 - 4.5753 0.98 1930 147 0.1876 0.2116 REMARK 3 2 4.5753 - 3.6330 0.99 1859 137 0.1475 0.1965 REMARK 3 3 3.6330 - 3.1741 0.99 1827 132 0.1633 0.2045 REMARK 3 4 3.1741 - 2.8841 1.00 1838 133 0.1814 0.2171 REMARK 3 5 2.8841 - 2.6775 0.99 1800 140 0.1853 0.2313 REMARK 3 6 2.6775 - 2.5197 0.99 1811 134 0.1802 0.2302 REMARK 3 7 2.5197 - 2.3935 1.00 1798 131 0.1931 0.2548 REMARK 3 8 2.3935 - 2.2894 1.00 1813 140 0.1919 0.2689 REMARK 3 9 2.2894 - 2.2012 0.99 1769 137 0.1880 0.2416 REMARK 3 10 2.2012 - 2.1253 1.00 1805 135 0.2052 0.2561 REMARK 3 11 2.1253 - 2.0588 1.00 1806 119 0.2108 0.2768 REMARK 3 12 2.0588 - 2.0000 1.00 1758 146 0.2168 0.2426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2561 REMARK 3 ANGLE : 1.134 3506 REMARK 3 CHIRALITY : 0.070 416 REMARK 3 PLANARITY : 0.006 449 REMARK 3 DIHEDRAL : 12.854 916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN Z AND RESID 134:200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2087 10.0057 -24.1929 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1679 REMARK 3 T33: 0.1689 T12: -0.0338 REMARK 3 T13: 0.0185 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.3174 L22: 0.7680 REMARK 3 L33: 0.3438 L12: -0.0843 REMARK 3 L13: -0.1161 L23: 0.4960 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: -0.0838 S13: 0.1717 REMARK 3 S21: 0.0489 S22: -0.0924 S23: 0.1529 REMARK 3 S31: -0.0445 S32: 0.0008 S33: 0.0184 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN Z AND RESID 201:268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9025 -11.8707 -31.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.0965 T22: 0.1110 REMARK 3 T33: 0.1047 T12: -0.0008 REMARK 3 T13: -0.0268 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.1865 L22: 1.9469 REMARK 3 L33: 1.4000 L12: 0.9272 REMARK 3 L13: 0.2397 L23: 0.5159 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: 0.0597 S13: 0.0926 REMARK 3 S21: -0.0986 S22: 0.0724 S23: 0.0258 REMARK 3 S31: -0.0778 S32: 0.1016 S33: -0.0126 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN Z AND RESID 269:298 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3808 14.6701 -35.5843 REMARK 3 T TENSOR REMARK 3 T11: 0.3945 T22: 0.2325 REMARK 3 T33: 0.2756 T12: 0.0151 REMARK 3 T13: -0.1024 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.7006 L22: 5.8370 REMARK 3 L33: 2.6829 L12: 1.8759 REMARK 3 L13: 1.9731 L23: 0.7451 REMARK 3 S TENSOR REMARK 3 S11: -0.4356 S12: 0.1141 S13: 0.4832 REMARK 3 S21: -0.8762 S22: 0.0147 S23: 0.7983 REMARK 3 S31: -0.1686 S32: -0.1752 S33: 0.3944 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN Z AND RESID 299:326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3445 5.9926 -30.5756 REMARK 3 T TENSOR REMARK 3 T11: 0.1652 T22: 0.2515 REMARK 3 T33: 0.3542 T12: -0.0137 REMARK 3 T13: -0.0013 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.9646 L22: 3.1307 REMARK 3 L33: 4.1702 L12: 2.3164 REMARK 3 L13: -0.7842 L23: -1.8365 REMARK 3 S TENSOR REMARK 3 S11: -0.1434 S12: 0.0178 S13: 0.3636 REMARK 3 S21: -0.4501 S22: -0.1171 S23: -0.5344 REMARK 3 S31: -0.0662 S32: 0.3782 S33: 0.2154 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN Z AND RESID 327:333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5018 -10.4077 -42.9054 REMARK 3 T TENSOR REMARK 3 T11: 1.0021 T22: 0.9011 REMARK 3 T33: 0.4825 T12: -0.0352 REMARK 3 T13: -0.0339 T23: -0.1386 REMARK 3 L TENSOR REMARK 3 L11: 8.4067 L22: 3.8228 REMARK 3 L33: 6.3542 L12: -3.5179 REMARK 3 L13: 1.8732 L23: -2.9958 REMARK 3 S TENSOR REMARK 3 S11: 0.2671 S12: 1.3843 S13: -0.9958 REMARK 3 S21: -1.6571 S22: 0.5878 S23: 0.5413 REMARK 3 S31: 1.7060 S32: -0.8983 S33: -0.7688 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN Z AND RESID 334:338 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0704 -10.4241 -36.5220 REMARK 3 T TENSOR REMARK 3 T11: 0.2486 T22: 0.2823 REMARK 3 T33: 0.1212 T12: 0.0222 REMARK 3 T13: 0.0455 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 2.7862 L22: 5.7463 REMARK 3 L33: 3.2448 L12: -0.8932 REMARK 3 L13: -0.9980 L23: -0.8554 REMARK 3 S TENSOR REMARK 3 S11: 0.1873 S12: 1.2959 S13: -0.2985 REMARK 3 S21: -1.2412 S22: 0.0232 S23: -0.1714 REMARK 3 S31: 0.0991 S32: 0.5379 S33: 0.1285 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN Z AND RESID 339:436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1194 -4.1079 -24.7837 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0845 REMARK 3 T33: 0.1039 T12: 0.0110 REMARK 3 T13: 0.0105 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.0385 L22: 2.5009 REMARK 3 L33: 1.9734 L12: 0.6167 REMARK 3 L13: 0.0853 L23: 1.1474 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: -0.0476 S13: -0.0070 REMARK 3 S21: 0.0181 S22: -0.0026 S23: -0.0131 REMARK 3 S31: 0.0809 S32: 0.0750 S33: -0.0284 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN Z AND RESID 437:463 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5297 0.2392 -38.2160 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.1872 REMARK 3 T33: 0.1305 T12: -0.0430 REMARK 3 T13: 0.0891 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.2454 L22: 2.1248 REMARK 3 L33: 2.0820 L12: 0.0958 REMARK 3 L13: -0.0738 L23: 0.0079 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.3915 S13: 0.0047 REMARK 3 S21: -0.4419 S22: 0.3367 S23: -0.3518 REMARK 3 S31: -0.2211 S32: 0.4266 S33: -0.1705 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : K-B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28905 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.857 REMARK 200 RESOLUTION RANGE LOW (A) : 33.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.01200 REMARK 200 R SYM FOR SHELL (I) : 1.20700 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM LITHIUM SULFATE, 20% PEG 3350, REMARK 280 HANGING DROP, TEMPERATURE 296.15K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.84100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.55050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.84100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.55050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY Z 129 REMARK 465 PRO Z 130 REMARK 465 LEU Z 131 REMARK 465 GLY Z 132 REMARK 465 SER Z 133 REMARK 465 PRO Z 292 REMARK 465 PRO Z 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG Z 146 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG Z 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS Z 175 CG CD CE NZ REMARK 470 LYS Z 260 CG CD CE NZ REMARK 470 LYS Z 268 CG CD CE NZ REMARK 470 ARG Z 288 CG CD NE CZ NH1 NH2 REMARK 470 GLU Z 294 CG CD OE1 OE2 REMARK 470 LYS Z 304 CG CD CE NZ REMARK 470 ASP Z 320 CG OD1 OD2 REMARK 470 ARG Z 350 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN Z 462 O HOH Z 898 1.82 REMARK 500 O HOH Z 887 O HOH Z 899 1.84 REMARK 500 O HOH Z 831 O HOH Z 865 1.87 REMARK 500 OE1 GLU Z 458 O HOH Z 897 1.90 REMARK 500 O HOH Z 893 O HOH Z 896 1.92 REMARK 500 OD1 ASP Z 222 O HOH Z 869 1.93 REMARK 500 NE2 GLN Z 154 O HOH Z 881 1.94 REMARK 500 O HOH Z 856 O HOH Z 858 1.95 REMARK 500 O HOH Z 781 O HOH Z 855 1.96 REMARK 500 O HOH Z 795 O HOH Z 851 2.03 REMARK 500 O HOH Z 718 O HOH Z 851 2.03 REMARK 500 NZ LYS Z 365 O HOH Z 854 2.04 REMARK 500 O HOH Z 838 O HOH Z 867 2.07 REMARK 500 O HOH Z 844 O HOH Z 845 2.10 REMARK 500 OE1 GLN Z 394 O HOH Z 754 2.11 REMARK 500 O HOH Z 778 O HOH Z 810 2.12 REMARK 500 OD1 ASN Z 335 O HOH Z 882 2.12 REMARK 500 O HOH Z 824 O HOH Z 826 2.14 REMARK 500 O HOH Z 737 O HOH Z 758 2.18 REMARK 500 N ASP Z 334 O HOH Z 882 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH Z 839 O HOH Z 842 3554 1.78 REMARK 500 O HOH Z 859 O HOH Z 867 4444 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL Z 197 -60.07 66.44 REMARK 500 ASN Z 226 73.17 55.56 REMARK 500 GLU Z 456 80.67 -161.66 REMARK 500 GLN Z 462 51.67 70.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 Z 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OAF RELATED DB: PDB REMARK 900 WILDTYPE PROTEIN. REMARK 900 RELATED ID: 4OAG RELATED DB: PDB REMARK 900 WILDTYPE PROTEIN BOUND TO ADP. REMARK 900 RELATED ID: 4AOH RELATED DB: PDB REMARK 900 H201A MUTANT DBREF 4OAI Z 134 463 UNP Q8BGV8 MID51_MOUSE 134 463 SEQADV 4OAI GLY Z 129 UNP Q8BGV8 EXPRESSION TAG SEQADV 4OAI PRO Z 130 UNP Q8BGV8 EXPRESSION TAG SEQADV 4OAI LEU Z 131 UNP Q8BGV8 EXPRESSION TAG SEQADV 4OAI GLY Z 132 UNP Q8BGV8 EXPRESSION TAG SEQADV 4OAI SER Z 133 UNP Q8BGV8 EXPRESSION TAG SEQADV 4OAI ALA Z 169 UNP Q8BGV8 ARG 169 ENGINEERED MUTATION SEQADV 4OAI ALA Z 182 UNP Q8BGV8 ARG 182 ENGINEERED MUTATION SEQADV 4OAI ALA Z 183 UNP Q8BGV8 ASP 183 ENGINEERED MUTATION SEQADV 4OAI ALA Z 212 UNP Q8BGV8 GLN 212 ENGINEERED MUTATION SEQADV 4OAI ALA Z 213 UNP Q8BGV8 ASN 213 ENGINEERED MUTATION SEQRES 1 Z 335 GLY PRO LEU GLY SER SER LEU GLN GLU LYS LEU LEU SER SEQRES 2 Z 335 TYR TYR ARG ASN ARG ALA ALA ILE PRO ALA GLY GLU GLN SEQRES 3 Z 335 ALA ARG ALA LYS GLN ALA ALA VAL ASP ILE CYS ALA GLU SEQRES 4 Z 335 LEU ALA SER PHE LEU ARG ALA LYS LEU PRO ASP MET PRO SEQRES 5 Z 335 LEU ALA ALA MET TYR LEU SER GLY SER LEU TYR ASP ASP SEQRES 6 Z 335 LEU GLN VAL VAL THR ALA ASP HIS ILE GLN LEU ILE VAL SEQRES 7 Z 335 PRO LEU VAL LEU GLU ALA ALA LEU TRP SER CYS ILE PRO SEQRES 8 Z 335 GLY GLU ASP THR ILE MET ASN VAL PRO GLY PHE PHE LEU SEQRES 9 Z 335 VAL ARG ARG GLU ASN PRO GLU TYR PHE PRO ARG GLY SER SEQRES 10 Z 335 SER TYR TRP ASP ARG CYS VAL VAL GLY GLY TYR LEU SER SEQRES 11 Z 335 PRO LYS THR VAL ALA ASP THR PHE GLU LYS VAL VAL ALA SEQRES 12 Z 335 GLY SER ILE ASN TRP PRO ALA ILE GLY SER LEU LEU ASP SEQRES 13 Z 335 TYR VAL ILE ARG PRO ALA PRO PRO PRO GLU ALA LEU THR SEQRES 14 Z 335 LEU GLU VAL GLN TYR GLU LYS ASP LYS HIS LEU VAL ILE SEQRES 15 Z 335 ASP PHE LEU PRO SER VAL THR LEU GLY ASP THR VAL LEU SEQRES 16 Z 335 VAL ALA ARG PRO HIS ARG LEU ALA GLN TYR ASP ASN LEU SEQRES 17 Z 335 TRP ARG LEU SER LEU ARG PRO ALA GLU THR ALA ARG LEU SEQRES 18 Z 335 ARG ALA LEU ASP GLN ALA ASP SER GLY CYS ARG SER LEU SEQRES 19 Z 335 CYS LEU LYS ILE LEU LYS ALA ILE CYS LYS SER THR PRO SEQRES 20 Z 335 ALA LEU GLY HIS LEU THR ALA SER GLN LEU THR ASN VAL SEQRES 21 Z 335 ILE LEU HIS LEU ALA GLN GLU GLU ALA ASP TRP SER PRO SEQRES 22 Z 335 ASP MET LEU ALA ASP ARG PHE LEU GLN ALA LEU ARG GLY SEQRES 23 Z 335 LEU ILE SER TYR LEU GLU ALA GLY VAL LEU PRO SER ALA SEQRES 24 Z 335 LEU ASN PRO LYS VAL ASN LEU PHE ALA GLU LEU THR PRO SEQRES 25 Z 335 GLN GLU ILE ASP GLU LEU GLY TYR THR LEU TYR CYS SER SEQRES 26 Z 335 LEU SER GLU PRO GLU VAL LEU LEU GLN THR HET SO4 Z 501 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *302(H2 O) HELIX 1 1 SER Z 134 ARG Z 146 1 13 HELIX 2 2 PRO Z 150 LEU Z 176 1 27 HELIX 3 3 GLU Z 221 THR Z 223 5 3 HELIX 4 4 SER Z 246 ARG Z 250 5 5 HELIX 5 5 SER Z 258 SER Z 273 1 16 HELIX 6 6 ASN Z 275 ASP Z 284 1 10 HELIX 7 7 LEU Z 330 ASP Z 334 5 5 HELIX 8 8 LEU Z 341 SER Z 357 1 17 HELIX 9 9 CYS Z 359 THR Z 374 1 16 HELIX 10 10 PRO Z 375 GLY Z 378 5 4 HELIX 11 11 THR Z 381 GLU Z 396 1 16 HELIX 12 12 SER Z 400 ASP Z 402 5 3 HELIX 13 13 MET Z 403 GLY Z 422 1 20 HELIX 14 14 THR Z 439 LEU Z 454 1 16 HELIX 15 15 SER Z 455 GLN Z 462 5 8 SHEET 1 A 7 TYR Z 185 SER Z 187 0 SHEET 2 A 7 HIS Z 201 PRO Z 207 -1 O GLN Z 203 N SER Z 187 SHEET 3 A 7 LYS Z 306 LEU Z 318 1 O ASP Z 311 N LEU Z 204 SHEET 4 A 7 THR Z 321 VAL Z 324 -1 O THR Z 321 N LEU Z 318 SHEET 5 A 7 TRP Z 337 SER Z 340 -1 O SER Z 340 N VAL Z 322 SHEET 6 A 7 PHE Z 230 ARG Z 235 -1 N PHE Z 231 O TRP Z 337 SHEET 7 A 7 TRP Z 215 PRO Z 219 -1 N SER Z 216 O ARG Z 234 SHEET 1 B 5 TYR Z 185 SER Z 187 0 SHEET 2 B 5 HIS Z 201 PRO Z 207 -1 O GLN Z 203 N SER Z 187 SHEET 3 B 5 LYS Z 306 LEU Z 318 1 O ASP Z 311 N LEU Z 204 SHEET 4 B 5 THR Z 297 GLU Z 303 -1 N LEU Z 298 O ILE Z 310 SHEET 5 B 5 VAL Z 286 PRO Z 289 -1 N ARG Z 288 O GLU Z 299 SHEET 1 C 2 VAL Z 252 VAL Z 253 0 SHEET 2 C 2 TYR Z 256 LEU Z 257 -1 O TYR Z 256 N VAL Z 253 SITE 1 AC1 8 SER Z 189 HIS Z 201 LYS Z 368 HOH Z 610 SITE 2 AC1 8 HOH Z 643 HOH Z 658 HOH Z 728 HOH Z 811 CRYST1 63.682 67.101 79.410 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012593 0.00000