HEADER HYDROLASE 06-JAN-14 4OAP TITLE AN AXE2 MUTANT (W190I), AN ACETYL-XYLOOLIGOSACCHARIDE ESTERASE FROM TITLE 2 GEOBACILLUS STEARMOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL XYLAN ESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: AXE2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SGNH FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LANSKY,O.ALALOUF,H.V.SOLOMON,H.BELRHALI,Y.SHOHAM,G.SHOHAM REVDAT 2 20-SEP-23 4OAP 1 REMARK SEQADV REVDAT 1 14-JAN-15 4OAP 0 JRNL AUTH S.LANSKY,O.ALALOUF,H.V.SOLOMON,H.BELRHALI,Y.SHOHAM,G.SHOHAM JRNL TITL AN AXE2 MUTANT (W190I), AN ACETYL-XYLOOLIGOSACCHARIDE JRNL TITL 2 ESTERASE FROM GEOBACILLUS STEARMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3403 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 432 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -2.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3675 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3597 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4970 ; 2.099 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8264 ; 0.983 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 457 ; 6.211 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;32.901 ;23.452 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;14.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;15.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4102 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 837 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46932 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3W7V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M POTASSIUM SODIUM TARTRATE, 0.1M REMARK 280 IMIDAZOLE BUFFER, PH 7.8, 0.3M NACL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.97500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.67100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.97500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 106.67100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.97500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 106.67100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.97500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 106.67100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.97500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 106.67100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.97500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 106.67100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.97500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 106.67100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.97500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.97500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.67100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -266.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 426 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 541 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 189 C ALA A 189 O 0.179 REMARK 500 GLU B 123 CD GLU B 123 OE1 0.078 REMARK 500 ALA B 189 C ALA B 189 O 0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 171 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ILE A 190 CG1 - CB - CG2 ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET B 103 CG - SD - CE ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP B 111 CB - CG - OD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP B 111 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ILE B 190 CG1 - CB - CG2 ANGL. DEV. = 14.0 DEGREES REMARK 500 MET B 201 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG B 209 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 209 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 14 -152.36 -109.75 REMARK 500 VAL A 77 -65.40 -122.98 REMARK 500 MET A 103 73.58 -100.35 REMARK 500 ALA A 189 108.61 -179.63 REMARK 500 VAL A 193 -50.20 -134.79 REMARK 500 ASP B 14 -149.90 -102.62 REMARK 500 SER B 29 -172.09 168.01 REMARK 500 ALA B 189 108.15 179.67 REMARK 500 VAL B 193 -55.63 -129.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OAO RELATED DB: PDB REMARK 900 AXE2 MUTANT (R55A) REMARK 900 RELATED ID: 3W7V RELATED DB: PDB REMARK 900 AXE2 WT REMARK 900 RELATED ID: 4JHL RELATED DB: PDB REMARK 900 AXE2 SELENOMETHIONINE REMARK 900 RELATED ID: 4JKO RELATED DB: PDB REMARK 900 AXE2 CATALYTIC MUTANT (S15A) REMARK 900 RELATED ID: 4JJ4 RELATED DB: PDB REMARK 900 AXE2 CATALYTIC MUTANT (D191A) REMARK 900 RELATED ID: 4JJ6 RELATED DB: PDB REMARK 900 AXE2 CATALYTIC MUTANT (H194A) DBREF 4OAP A 1 219 UNP Q09LX1 Q09LX1_GEOSE 1 219 DBREF 4OAP B 1 219 UNP Q09LX1 Q09LX1_GEOSE 1 219 SEQADV 4OAP ILE A 190 UNP Q09LX1 TRP 190 ENGINEERED MUTATION SEQADV 4OAP ILE B 190 UNP Q09LX1 TRP 190 ENGINEERED MUTATION SEQRES 1 A 219 MET LYS ILE GLY SER GLY GLU LYS LEU LEU PHE ILE GLY SEQRES 2 A 219 ASP SER ILE THR ASP CYS GLY ARG ALA ARG PRO GLU GLY SEQRES 3 A 219 GLU GLY SER PHE GLY ALA LEU GLY THR GLY TYR VAL ALA SEQRES 4 A 219 TYR VAL VAL GLY LEU LEU GLN ALA VAL TYR PRO GLU LEU SEQRES 5 A 219 GLY ILE ARG VAL VAL ASN LYS GLY ILE SER GLY ASN THR SEQRES 6 A 219 VAL ARG ASP LEU LYS ALA ARG TRP GLU GLU ASP VAL ILE SEQRES 7 A 219 ALA GLN LYS PRO ASP TRP VAL SER ILE MET ILE GLY ILE SEQRES 8 A 219 ASN ASP VAL TRP ARG GLN TYR ASP LEU PRO PHE MET LYS SEQRES 9 A 219 GLU LYS HIS VAL TYR LEU ASP GLU TYR GLU ALA THR LEU SEQRES 10 A 219 ARG SER LEU VAL LEU GLU THR LYS PRO LEU VAL LYS GLY SEQRES 11 A 219 ILE ILE LEU MET THR PRO PHE TYR ILE GLU GLY ASN GLU SEQRES 12 A 219 GLN ASP PRO MET ARG ARG THR MET ASP GLN TYR GLY ARG SEQRES 13 A 219 VAL VAL LYS GLN ILE ALA GLU GLU THR ASN SER LEU PHE SEQRES 14 A 219 VAL ASP THR GLN ALA ALA PHE ASN GLU VAL LEU LYS THR SEQRES 15 A 219 LEU TYR PRO ALA ALA LEU ALA ILE ASP ARG VAL HIS PRO SEQRES 16 A 219 SER VAL ALA GLY HIS MET ILE LEU ALA ARG ALA PHE LEU SEQRES 17 A 219 ARG GLU ILE GLY PHE GLU TRP VAL ARG SER ARG SEQRES 1 B 219 MET LYS ILE GLY SER GLY GLU LYS LEU LEU PHE ILE GLY SEQRES 2 B 219 ASP SER ILE THR ASP CYS GLY ARG ALA ARG PRO GLU GLY SEQRES 3 B 219 GLU GLY SER PHE GLY ALA LEU GLY THR GLY TYR VAL ALA SEQRES 4 B 219 TYR VAL VAL GLY LEU LEU GLN ALA VAL TYR PRO GLU LEU SEQRES 5 B 219 GLY ILE ARG VAL VAL ASN LYS GLY ILE SER GLY ASN THR SEQRES 6 B 219 VAL ARG ASP LEU LYS ALA ARG TRP GLU GLU ASP VAL ILE SEQRES 7 B 219 ALA GLN LYS PRO ASP TRP VAL SER ILE MET ILE GLY ILE SEQRES 8 B 219 ASN ASP VAL TRP ARG GLN TYR ASP LEU PRO PHE MET LYS SEQRES 9 B 219 GLU LYS HIS VAL TYR LEU ASP GLU TYR GLU ALA THR LEU SEQRES 10 B 219 ARG SER LEU VAL LEU GLU THR LYS PRO LEU VAL LYS GLY SEQRES 11 B 219 ILE ILE LEU MET THR PRO PHE TYR ILE GLU GLY ASN GLU SEQRES 12 B 219 GLN ASP PRO MET ARG ARG THR MET ASP GLN TYR GLY ARG SEQRES 13 B 219 VAL VAL LYS GLN ILE ALA GLU GLU THR ASN SER LEU PHE SEQRES 14 B 219 VAL ASP THR GLN ALA ALA PHE ASN GLU VAL LEU LYS THR SEQRES 15 B 219 LEU TYR PRO ALA ALA LEU ALA ILE ASP ARG VAL HIS PRO SEQRES 16 B 219 SER VAL ALA GLY HIS MET ILE LEU ALA ARG ALA PHE LEU SEQRES 17 B 219 ARG GLU ILE GLY PHE GLU TRP VAL ARG SER ARG HET CL A 301 1 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET ACT A 307 4 HET CL B 301 1 HET GOL B 302 6 HET GOL B 303 6 HET GOL B 304 6 HET GOL B 305 6 HET GOL B 306 6 HET ACT B 307 4 HET ACT B 308 4 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 2(CL 1-) FORMUL 4 GOL 10(C3 H8 O3) FORMUL 9 ACT 3(C2 H3 O2 1-) FORMUL 18 HOH *432(H2 O) HELIX 1 1 ASP A 14 CYS A 19 1 6 HELIX 2 2 GLY A 36 TYR A 49 1 14 HELIX 3 3 PRO A 50 GLY A 53 5 4 HELIX 4 4 THR A 65 VAL A 77 1 13 HELIX 5 5 ILE A 78 LYS A 81 5 4 HELIX 6 6 GLY A 90 LEU A 100 1 11 HELIX 7 7 MET A 103 HIS A 107 5 5 HELIX 8 8 TYR A 109 LYS A 125 1 17 HELIX 9 9 PRO A 126 VAL A 128 5 3 HELIX 10 10 ASP A 145 ASN A 166 1 22 HELIX 11 11 ASP A 171 LYS A 181 1 11 HELIX 12 12 TYR A 184 LEU A 188 5 5 HELIX 13 13 SER A 196 ILE A 211 1 16 HELIX 14 14 ASP B 14 CYS B 19 1 6 HELIX 15 15 PHE B 30 GLY B 34 5 5 HELIX 16 16 GLY B 36 TYR B 49 1 14 HELIX 17 17 PRO B 50 GLY B 53 5 4 HELIX 18 18 THR B 65 VAL B 77 1 13 HELIX 19 19 ILE B 78 LYS B 81 5 4 HELIX 20 20 GLY B 90 LEU B 100 1 11 HELIX 21 21 TYR B 109 LYS B 125 1 17 HELIX 22 22 PRO B 126 VAL B 128 5 3 HELIX 23 23 ASP B 145 ASN B 166 1 22 HELIX 24 24 ASP B 171 LYS B 181 1 11 HELIX 25 25 TYR B 184 LEU B 188 5 5 HELIX 26 26 SER B 196 ILE B 211 1 16 SHEET 1 A 5 ARG A 55 ASN A 58 0 SHEET 2 A 5 LYS A 8 GLY A 13 1 N LEU A 9 O ARG A 55 SHEET 3 A 5 TRP A 84 MET A 88 1 O SER A 86 N LEU A 10 SHEET 4 A 5 GLY A 130 MET A 134 1 O MET A 134 N ILE A 87 SHEET 5 A 5 LEU A 168 VAL A 170 1 O VAL A 170 N LEU A 133 SHEET 1 B 5 ARG B 55 ASN B 58 0 SHEET 2 B 5 LYS B 8 GLY B 13 1 N LEU B 9 O ARG B 55 SHEET 3 B 5 TRP B 84 MET B 88 1 O SER B 86 N LEU B 10 SHEET 4 B 5 GLY B 130 MET B 134 1 O MET B 134 N ILE B 87 SHEET 5 B 5 LEU B 168 VAL B 170 1 O LEU B 168 N ILE B 131 CISPEP 1 ARG A 23 PRO A 24 0 -2.10 CISPEP 2 GLU A 27 GLY A 28 0 -11.02 CISPEP 3 ARG B 23 PRO B 24 0 9.33 SITE 1 AC1 3 SER A 15 GLY A 63 ASN A 92 SITE 1 AC2 4 TYR A 109 ASP A 111 HOH A 419 HOH A 476 SITE 1 AC3 7 PRO A 146 GLU B 140 GLY B 141 PRO B 185 SITE 2 AC3 7 GOL B 306 HOH B 410 HOH B 454 SITE 1 AC4 8 GLU A 27 GLY A 28 SER A 29 PHE A 30 SITE 2 AC4 8 GLY A 31 ALA A 32 LEU A 100 LYS A 106 SITE 1 AC5 8 GLU A 143 ARG A 148 ASP A 152 ASP A 171 SITE 2 AC5 8 GLN A 173 ASN A 177 HOH A 520 HOH A 558 SITE 1 AC6 6 LEU A 180 LYS A 181 HOH A 528 GOL B 302 SITE 2 AC6 6 HOH B 519 HOH B 594 SITE 1 AC7 6 THR A 35 TYR A 40 PRO A 195 VAL A 197 SITE 2 AC7 6 HIS A 200 HOH A 497 SITE 1 AC8 3 SER B 15 GLY B 63 ASN B 92 SITE 1 AC9 6 GLU A 140 GLY A 141 PRO A 185 GOL A 306 SITE 2 AC9 6 HOH A 422 HOH B 594 SITE 1 BC1 8 PHE B 169 VAL B 170 ASP B 171 GLU B 210 SITE 2 BC1 8 HOH B 426 HOH B 440 HOH B 497 HOH B 512 SITE 1 BC2 8 GLU B 27 GLY B 28 SER B 29 LEU B 33 SITE 2 BC2 8 VAL B 42 ILE B 54 ARG B 55 VAL B 56 SITE 1 BC3 4 SER A 196 SER B 29 PHE B 30 GLY B 31 SITE 1 BC4 5 GOL A 303 HOH A 534 LEU B 180 LYS B 181 SITE 2 BC4 5 HOH B 454 SITE 1 BC5 6 CYS B 19 THR B 35 TYR B 40 PRO B 195 SITE 2 BC5 6 HIS B 200 HOH B 523 SITE 1 BC6 6 ARG B 67 GLU B 74 GLU B 105 GLU B 123 SITE 2 BC6 6 HOH B 592 HOH B 600 CRYST1 109.950 109.950 213.342 90.00 90.00 90.00 I 4 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004687 0.00000