HEADER VIRAL PROTEIN, TRANSFERASE 07-JAN-14 4OBC TITLE CRYSTAL STRUCTURE OF HCV POLYMERASE NS5B GENOTYPE 2A JFH-1 ISOLATE TITLE 2 WITH THE S15G, C223H, V321I RESISTANCE MUTATIONS AGAINST THE TITLE 3 GUANOSINE ANALOG GS-0938 (PSI-3529238) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS5B, P68; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS JFH-1; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 356411; SOURCE 5 STRAIN: JFH-1; SOURCE 6 GENE: POLG_HCVJF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: V5854 KEYWDS HEPATITIS, HCV, VIRAL POLYMERASE, RNA-DEPENDENT-RNA-POLYMERASE, RDRP, KEYWDS 2 RESISTANCE, NUCLEOTIDE ANALOG INHIBITOR, VIRAL PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.EDWARDS,J.ABENDROTH,T.C.APPLEBY REVDAT 4 20-SEP-23 4OBC 1 REMARK SEQADV REVDAT 3 22-NOV-17 4OBC 1 REMARK REVDAT 2 29-OCT-14 4OBC 1 JRNL REVDAT 1 10-SEP-14 4OBC 0 JRNL AUTH A.M.LAM,T.E.EDWARDS,R.T.MOSLEY,E.MURAKAMI,S.BANSAL,C.LUGO, JRNL AUTH 2 H.BAO,M.J.OTTO,M.J.SOFIA,P.A.FURMAN JRNL TITL MOLECULAR AND STRUCTURAL BASIS FOR THE ROLES OF HEPATITIS C JRNL TITL 2 VIRUS POLYMERASE NS5B AMINO ACIDS 15, 223, AND 321 IN VIRAL JRNL TITL 3 REPLICATION AND DRUG RESISTANCE. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 58 6861 2014 JRNL REFN ISSN 0066-4804 JRNL PMID 25182647 JRNL DOI 10.1128/AAC.03847-14 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2400 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : -2.81000 REMARK 3 B12 (A**2) : 0.94000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.257 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.803 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4426 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6017 ; 1.421 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 5.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;33.850 ;22.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 713 ;15.998 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;14.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3311 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2776 ; 0.741 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4482 ; 1.452 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1650 ; 2.100 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1534 ; 3.585 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4OBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.63800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 1YUY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NS5B VCID 5854 AT 4.25 MG/ML IN 5 MM REMARK 280 TRIS PH 7.5, 200 MM NH4OAC, 1 MM EDTA 1 MM DTT AGAINST PACT REMARK 280 SCREEN CONDITION D5, 25% PEG 1500, 0.1M MMT MALIC ACID, MES, REMARK 280 TRIS BUFFER PH 8.0 SUPPLEMENTED WITH 20% GLYCEROL AS CRYO- REMARK 280 PROTECTANT, CRYSTAL TRACKING ID 223572D5, PUCK ID CPS0237-1, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.71133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.85567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.28350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.42783 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.13917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 554 REMARK 465 ALA A 555 REMARK 465 GLY A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 ASP A 559 REMARK 465 ILE A 560 REMARK 465 PHE A 561 REMARK 465 HIS A 562 REMARK 465 SER A 563 REMARK 465 VAL A 564 REMARK 465 SER A 565 REMARK 465 ARG A 566 REMARK 465 ALA A 567 REMARK 465 ARG A 568 REMARK 465 PRO A 569 REMARK 465 ARG A 570 REMARK 465 LEU A 571 REMARK 465 GLU A 572 REMARK 465 HIS A 573 REMARK 465 HIS A 574 REMARK 465 HIS A 575 REMARK 465 HIS A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 ARG A 401 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 531 CG CD CE NZ REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 GLU A 541 CG CD OE1 OE2 REMARK 470 ARG A 543 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 101 33.69 -97.58 REMARK 500 GLN A 131 -42.74 -135.83 REMARK 500 LEU A 260 -58.66 -125.32 REMARK 500 SER A 347 54.12 70.65 REMARK 500 ALA A 348 62.77 -150.59 REMARK 500 SER A 367 16.17 59.69 REMARK 500 VAL A 424 -67.14 -104.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E76 RELATED DB: PDB REMARK 900 HCV NS5B 2A JFH-1 WITH BETA-HAIRPIN LOOP DELETION REMARK 900 RELATED ID: 4E78 RELATED DB: PDB REMARK 900 HCV NS5B 2A JFH-1 WITH BETA-HAIRPIN LOOP DELETION BOUND TO PRIMER- REMARK 900 TEMPLATE RNA WITH 3'-DG REMARK 900 RELATED ID: 4E7A RELATED DB: PDB REMARK 900 HCV NS5B 2A JFH-1 WITH BETA-HAIRPIN LOOP DELETION BOUND TO PRIMER- REMARK 900 TEMPLATE RNA WITH 2',3'-DDC DBREF 4OBC A 1 570 UNP Q99IB8 POLG_HCVJF 2443 3012 SEQADV 4OBC MET A -1 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC SER A 0 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC GLY A 15 UNP Q99IB8 SER 2457 ENGINEERED MUTATION SEQADV 4OBC GLN A 86 UNP Q99IB8 GLU 2528 ENGINEERED MUTATION SEQADV 4OBC GLN A 87 UNP Q99IB8 GLU 2529 ENGINEERED MUTATION SEQADV 4OBC HIS A 223 UNP Q99IB8 CYS 2665 ENGINEERED MUTATION SEQADV 4OBC ILE A 321 UNP Q99IB8 VAL 2763 ENGINEERED MUTATION SEQADV 4OBC LEU A 571 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC GLU A 572 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 573 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 574 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 575 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 576 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 577 UNP Q99IB8 EXPRESSION TAG SEQADV 4OBC HIS A 578 UNP Q99IB8 EXPRESSION TAG SEQRES 1 A 580 MET SER SER MET SER TYR SER TRP THR GLY ALA LEU ILE SEQRES 2 A 580 THR PRO CYS GLY PRO GLU GLU GLU LYS LEU PRO ILE ASN SEQRES 3 A 580 PRO LEU SER ASN SER LEU LEU ARG TYR HIS ASN LYS VAL SEQRES 4 A 580 TYR CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS SEQRES 5 A 580 LYS VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS SEQRES 6 A 580 TYR ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER SEQRES 7 A 580 LYS VAL SER ALA ARG LEU LEU THR LEU GLN GLN ALA CYS SEQRES 8 A 580 GLN LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY SEQRES 9 A 580 PHE GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA SEQRES 10 A 580 VAL ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU SEQRES 11 A 580 ASP PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS SEQRES 12 A 580 ASN GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS SEQRES 13 A 580 LYS PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL SEQRES 14 A 580 ARG VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN SEQRES 15 A 580 LYS LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE SEQRES 16 A 580 GLN TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS SEQRES 17 A 580 ALA TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR SEQRES 18 A 580 ASP THR ARG HIS PHE ASP SER THR VAL THR GLU ARG ASP SEQRES 19 A 580 ILE ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU SEQRES 20 A 580 PRO GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU SEQRES 21 A 580 ARG LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY SEQRES 22 A 580 GLN THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL SEQRES 23 A 580 LEU THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL SEQRES 24 A 580 LYS ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA SEQRES 25 A 580 PRO THR MET LEU VAL CYS GLY ASP ASP LEU ILE VAL ILE SEQRES 26 A 580 SER GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU SEQRES 27 A 580 ARG ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO SEQRES 28 A 580 PRO GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU SEQRES 29 A 580 ILE THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY SEQRES 30 A 580 PRO ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO SEQRES 31 A 580 THR THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG SEQRES 32 A 580 HIS SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN SEQRES 33 A 580 TYR ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR SEQRES 34 A 580 HIS PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP SEQRES 35 A 580 GLN ASN LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER SEQRES 36 A 580 VAL ASN PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU SEQRES 37 A 580 HIS GLY LEU ASP ALA PHE SER MET HIS THR TYR SER HIS SEQRES 38 A 580 HIS GLU LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU SEQRES 39 A 580 GLY ALA PRO PRO LEU ARG VAL TRP LYS SER ARG ALA ARG SEQRES 40 A 580 ALA VAL ARG ALA SER LEU ILE SER ARG GLY GLY LYS ALA SEQRES 41 A 580 ALA VAL CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS SEQRES 42 A 580 THR LYS LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU SEQRES 43 A 580 LEU ASP LEU SER SER TRP PHE THR VAL GLY ALA GLY GLY SEQRES 44 A 580 GLY ASP ILE PHE HIS SER VAL SER ARG ALA ARG PRO ARG SEQRES 45 A 580 LEU GLU HIS HIS HIS HIS HIS HIS HET MES A 601 12 HET GOL A 602 6 HET GOL A 603 6 HET PG6 A 604 18 HET CL A 605 1 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MES C6 H13 N O4 S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 PG6 C12 H26 O6 FORMUL 6 CL CL 1- FORMUL 7 HOH *206(H2 O) HELIX 1 1 TYR A 33 ASN A 35 5 3 HELIX 2 2 THR A 41 LYS A 43 5 3 HELIX 3 3 SER A 44 THR A 53 1 10 HELIX 4 4 ASP A 61 SER A 76 1 16 HELIX 5 5 THR A 84 LEU A 91 1 8 HELIX 6 6 GLY A 104 LEU A 111 1 8 HELIX 7 7 SER A 112 ASP A 129 1 18 HELIX 8 8 ASP A 148 GLY A 152 5 5 HELIX 9 9 ASP A 164 GLN A 180 1 17 HELIX 10 10 LYS A 181 GLY A 188 1 8 HELIX 11 11 ALA A 189 TYR A 195 5 7 HELIX 12 12 SER A 196 LYS A 211 1 16 HELIX 13 13 HIS A 223 VAL A 228 1 6 HELIX 14 14 THR A 229 GLN A 241 1 13 HELIX 15 15 PRO A 246 LEU A 260 1 15 HELIX 16 16 THR A 286 GLY A 307 1 22 HELIX 17 17 GLY A 328 TYR A 346 1 19 HELIX 18 18 ASP A 359 ILE A 363 5 5 HELIX 19 19 PRO A 388 ALA A 395 1 8 HELIX 20 20 PRO A 404 ALA A 416 1 13 HELIX 21 21 THR A 418 VAL A 424 1 7 HELIX 22 22 VAL A 424 ASP A 437 1 14 HELIX 23 23 ASN A 455 LEU A 457 5 3 HELIX 24 24 ASP A 458 GLY A 468 1 11 HELIX 25 25 LEU A 469 SER A 473 5 5 HELIX 26 26 SER A 478 GLY A 493 1 16 HELIX 27 27 PRO A 496 ARG A 514 1 19 HELIX 28 28 GLY A 515 PHE A 526 1 12 HELIX 29 29 ASN A 527 VAL A 530 5 4 HELIX 30 30 LEU A 539 LEU A 544 1 6 SHEET 1 A 2 SER A 1 MET A 2 0 SHEET 2 A 2 ASP A 55 ARG A 56 -1 O ARG A 56 N SER A 1 SHEET 1 B 5 TYR A 4 TRP A 6 0 SHEET 2 B 5 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 B 5 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 4 B 5 THR A 136 ALA A 140 1 N THR A 136 O PHE A 267 SHEET 5 B 5 LEU A 159 TYR A 162 -1 O ILE A 160 N MET A 139 SHEET 1 C 2 VAL A 37 CYS A 39 0 SHEET 2 C 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 D 3 PRO A 214 ASP A 220 0 SHEET 2 D 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 D 3 VAL A 309 CYS A 316 -1 N VAL A 309 O GLU A 325 SHEET 1 E 2 ASN A 369 LEU A 374 0 SHEET 2 E 2 ARG A 380 THR A 385 -1 O ARG A 381 N ALA A 373 SHEET 1 F 2 LEU A 443 MET A 447 0 SHEET 2 F 2 SER A 450 VAL A 454 -1 O VAL A 454 N LEU A 443 SITE 1 AC1 6 GLU A 18 ASN A 142 GLU A 143 VAL A 144 SITE 2 AC1 6 ARG A 394 HIS A 402 SITE 1 AC2 6 HIS A 428 SER A 431 HIS A 479 TRP A 500 SITE 2 AC2 6 ARG A 503 HOH A 833 SITE 1 AC3 4 ARG A 158 SER A 367 ARG A 386 THR A 390 SITE 1 AC4 3 LYS A 100 TYR A 101 THR A 137 SITE 1 AC5 2 HIS A 402 SER A 403 CRYST1 140.208 140.208 92.567 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007132 0.004118 0.000000 0.00000 SCALE2 0.000000 0.008236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010803 0.00000