HEADER TRANSFERASE 07-JAN-14 4OBX TITLE CRYSTAL STRUCTURE OF YEAST COQ5 IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHOXY-6-POLYPRENYL-1,4-BENZOQUINOL METHYLASE, COMPND 3 MITOCHONDRIAL; COMPND 4 CHAIN: A, D, C, B; COMPND 5 FRAGMENT: CORE DOMAIN; COMPND 6 SYNONYM: UBIQUINONE BIOSYNTHESIS METHYLTRANSFERASE COQ5; COMPND 7 EC: 2.1.1.201; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: COQ5, DBI56, YM8339.09C, YML110C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P28 KEYWDS ROSSMANN FOLD, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.N.DAI,K.ZHOU,D.D.CAO,Y.L.JIANG,F.MENG,C.B.CHI,Y.M.REN,Y.X.CHEN, AUTHOR 2 C.Z.ZHOU REVDAT 3 20-SEP-23 4OBX 1 REMARK SEQADV REVDAT 2 10-SEP-14 4OBX 1 JRNL REVDAT 1 06-AUG-14 4OBX 0 JRNL AUTH Y.N.DAI,K.ZHOU,D.D.CAO,Y.L.JIANG,F.MENG,C.B.CHI,Y.M.REN, JRNL AUTH 2 Y.CHEN,C.Z.ZHOU JRNL TITL CRYSTAL STRUCTURES AND CATALYTIC MECHANISM OF THE JRNL TITL 2 C-METHYLTRANSFERASE COQ5 PROVIDE INSIGHTS INTO A KEY STEP OF JRNL TITL 3 THE YEAST COENZYME Q SYNTHESIS PATHWAY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2085 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 25084328 JRNL DOI 10.1107/S1399004714011559 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 58051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3081 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4229 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7500 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7688 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10352 ; 1.068 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 936 ; 5.368 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 372 ;34.487 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1364 ;15.216 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.825 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1090 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5840 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4OBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97882 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4OBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) 2-PROPANOL, 20% (W/V) REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1 M SODIUM CITRATE TRIBASIC, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.63500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.63500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 HIS A 57 REMARK 465 GLN A 58 REMARK 465 HIS A 59 REMARK 465 MET A 60 REMARK 465 SER A 61 REMARK 465 THR A 62 REMARK 465 LYS A 63 REMARK 465 GLN A 64 REMARK 465 LYS A 65 REMARK 465 LEU A 66 REMARK 465 VAL A 67 REMARK 465 GLY A 68 REMARK 465 ASP A 69 REMARK 465 VAL A 70 REMARK 465 PHE A 71 REMARK 465 SER A 72 REMARK 465 MET D 51 REMARK 465 GLY D 52 REMARK 465 HIS D 53 REMARK 465 HIS D 54 REMARK 465 HIS D 55 REMARK 465 HIS D 56 REMARK 465 HIS D 57 REMARK 465 GLN D 58 REMARK 465 HIS D 59 REMARK 465 MET D 60 REMARK 465 SER D 61 REMARK 465 THR D 62 REMARK 465 LYS D 63 REMARK 465 GLN D 64 REMARK 465 LYS D 65 REMARK 465 LEU D 66 REMARK 465 VAL D 67 REMARK 465 GLY D 68 REMARK 465 ASP D 69 REMARK 465 VAL D 70 REMARK 465 PHE D 71 REMARK 465 SER D 72 REMARK 465 MET C 51 REMARK 465 GLY C 52 REMARK 465 HIS C 53 REMARK 465 HIS C 54 REMARK 465 HIS C 55 REMARK 465 HIS C 56 REMARK 465 HIS C 57 REMARK 465 GLN C 58 REMARK 465 HIS C 59 REMARK 465 MET C 60 REMARK 465 SER C 61 REMARK 465 THR C 62 REMARK 465 LYS C 63 REMARK 465 GLN C 64 REMARK 465 LYS C 65 REMARK 465 LEU C 66 REMARK 465 VAL C 67 REMARK 465 GLY C 68 REMARK 465 ASP C 69 REMARK 465 VAL C 70 REMARK 465 PHE C 71 REMARK 465 SER C 72 REMARK 465 MET B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 HIS B 54 REMARK 465 HIS B 55 REMARK 465 HIS B 56 REMARK 465 HIS B 57 REMARK 465 GLN B 58 REMARK 465 HIS B 59 REMARK 465 MET B 60 REMARK 465 SER B 61 REMARK 465 THR B 62 REMARK 465 LYS B 63 REMARK 465 GLN B 64 REMARK 465 LYS B 65 REMARK 465 LEU B 66 REMARK 465 VAL B 67 REMARK 465 GLY B 68 REMARK 465 ASP B 69 REMARK 465 VAL B 70 REMARK 465 PHE B 71 REMARK 465 SER B 72 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 178 142.13 -172.69 REMARK 500 LYS D 182 -52.36 -124.09 REMARK 500 SER D 229 -158.57 -145.30 REMARK 500 SER D 288 57.65 28.04 REMARK 500 SER C 229 -159.53 -136.92 REMARK 500 ASP C 257 62.07 -152.81 REMARK 500 SER B 229 -154.50 -135.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAM C 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OBW RELATED DB: PDB DBREF 4OBX A 61 307 UNP P49017 COQ5_YEAST 61 307 DBREF 4OBX D 61 307 UNP P49017 COQ5_YEAST 61 307 DBREF 4OBX C 61 307 UNP P49017 COQ5_YEAST 61 307 DBREF 4OBX B 61 307 UNP P49017 COQ5_YEAST 61 307 SEQADV 4OBX MET A 51 UNP P49017 INITIATING METHIONINE SEQADV 4OBX GLY A 52 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 53 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 54 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 55 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 56 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 57 UNP P49017 EXPRESSION TAG SEQADV 4OBX GLN A 58 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS A 59 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET A 60 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET D 51 UNP P49017 INITIATING METHIONINE SEQADV 4OBX GLY D 52 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 53 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 54 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 55 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 56 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 57 UNP P49017 EXPRESSION TAG SEQADV 4OBX GLN D 58 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS D 59 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET D 60 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET C 51 UNP P49017 INITIATING METHIONINE SEQADV 4OBX GLY C 52 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 53 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 54 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 55 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 56 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 57 UNP P49017 EXPRESSION TAG SEQADV 4OBX GLN C 58 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS C 59 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET C 60 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET B 51 UNP P49017 INITIATING METHIONINE SEQADV 4OBX GLY B 52 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 53 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 54 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 55 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 56 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 57 UNP P49017 EXPRESSION TAG SEQADV 4OBX GLN B 58 UNP P49017 EXPRESSION TAG SEQADV 4OBX HIS B 59 UNP P49017 EXPRESSION TAG SEQADV 4OBX MET B 60 UNP P49017 EXPRESSION TAG SEQRES 1 A 257 MET GLY HIS HIS HIS HIS HIS GLN HIS MET SER THR LYS SEQRES 2 A 257 GLN LYS LEU VAL GLY ASP VAL PHE SER SER VAL ALA ASN SEQRES 3 A 257 ARG TYR ASP LEU MET ASN ASP VAL MET SER LEU GLY ILE SEQRES 4 A 257 HIS ARG LEU TRP LYS ASP HIS PHE ILE ASN LYS LEU ASP SEQRES 5 A 257 ALA GLY LYS ARG PRO ASN SER THR THR PRO LEU ASN PHE SEQRES 6 A 257 ILE ASP VAL ALA GLY GLY SER GLY ASP ILE ALA PHE GLY SEQRES 7 A 257 LEU LEU ASP HIS ALA GLU SER LYS PHE GLY ASP THR GLU SEQRES 8 A 257 SER THR MET ASP ILE VAL ASP ILE ASN PRO ASP MET LEU SEQRES 9 A 257 LYS GLU GLY GLU LYS ARG ALA MET GLU GLN GLY LYS TYR SEQRES 10 A 257 PHE LYS ASP PRO ARG VAL ARG PHE LEU VAL SER ASN GLY SEQRES 11 A 257 GLU LYS LEU GLU GLU ILE ASP SER ASP SER LYS ASP ILE SEQRES 12 A 257 TYR THR VAL SER PHE GLY ILE ARG ASN PHE THR ASP ILE SEQRES 13 A 257 GLN LYS GLY LEU ASN THR ALA TYR ARG VAL LEU LYS PRO SEQRES 14 A 257 GLY GLY ILE PHE TYR CYS LEU GLU PHE SER LYS ILE GLU SEQRES 15 A 257 ASN PRO LEU MET ASP PHE ALA TYR GLN GLN TRP ALA LYS SEQRES 16 A 257 VAL LEU PRO VAL MET GLY SER MET ILE ALA ASN ASP TYR SEQRES 17 A 257 ASP SER TYR GLN TYR LEU VAL GLU SER ILE GLU ARG PHE SEQRES 18 A 257 PRO ASP GLN GLU THR PHE LYS SER MET ILE GLU LYS ALA SEQRES 19 A 257 GLY PHE LYS SER ALA GLY TYR GLU SER LEU THR PHE GLY SEQRES 20 A 257 ILE CYS ALA ILE HIS TRP GLY ILE LYS VAL SEQRES 1 D 257 MET GLY HIS HIS HIS HIS HIS GLN HIS MET SER THR LYS SEQRES 2 D 257 GLN LYS LEU VAL GLY ASP VAL PHE SER SER VAL ALA ASN SEQRES 3 D 257 ARG TYR ASP LEU MET ASN ASP VAL MET SER LEU GLY ILE SEQRES 4 D 257 HIS ARG LEU TRP LYS ASP HIS PHE ILE ASN LYS LEU ASP SEQRES 5 D 257 ALA GLY LYS ARG PRO ASN SER THR THR PRO LEU ASN PHE SEQRES 6 D 257 ILE ASP VAL ALA GLY GLY SER GLY ASP ILE ALA PHE GLY SEQRES 7 D 257 LEU LEU ASP HIS ALA GLU SER LYS PHE GLY ASP THR GLU SEQRES 8 D 257 SER THR MET ASP ILE VAL ASP ILE ASN PRO ASP MET LEU SEQRES 9 D 257 LYS GLU GLY GLU LYS ARG ALA MET GLU GLN GLY LYS TYR SEQRES 10 D 257 PHE LYS ASP PRO ARG VAL ARG PHE LEU VAL SER ASN GLY SEQRES 11 D 257 GLU LYS LEU GLU GLU ILE ASP SER ASP SER LYS ASP ILE SEQRES 12 D 257 TYR THR VAL SER PHE GLY ILE ARG ASN PHE THR ASP ILE SEQRES 13 D 257 GLN LYS GLY LEU ASN THR ALA TYR ARG VAL LEU LYS PRO SEQRES 14 D 257 GLY GLY ILE PHE TYR CYS LEU GLU PHE SER LYS ILE GLU SEQRES 15 D 257 ASN PRO LEU MET ASP PHE ALA TYR GLN GLN TRP ALA LYS SEQRES 16 D 257 VAL LEU PRO VAL MET GLY SER MET ILE ALA ASN ASP TYR SEQRES 17 D 257 ASP SER TYR GLN TYR LEU VAL GLU SER ILE GLU ARG PHE SEQRES 18 D 257 PRO ASP GLN GLU THR PHE LYS SER MET ILE GLU LYS ALA SEQRES 19 D 257 GLY PHE LYS SER ALA GLY TYR GLU SER LEU THR PHE GLY SEQRES 20 D 257 ILE CYS ALA ILE HIS TRP GLY ILE LYS VAL SEQRES 1 C 257 MET GLY HIS HIS HIS HIS HIS GLN HIS MET SER THR LYS SEQRES 2 C 257 GLN LYS LEU VAL GLY ASP VAL PHE SER SER VAL ALA ASN SEQRES 3 C 257 ARG TYR ASP LEU MET ASN ASP VAL MET SER LEU GLY ILE SEQRES 4 C 257 HIS ARG LEU TRP LYS ASP HIS PHE ILE ASN LYS LEU ASP SEQRES 5 C 257 ALA GLY LYS ARG PRO ASN SER THR THR PRO LEU ASN PHE SEQRES 6 C 257 ILE ASP VAL ALA GLY GLY SER GLY ASP ILE ALA PHE GLY SEQRES 7 C 257 LEU LEU ASP HIS ALA GLU SER LYS PHE GLY ASP THR GLU SEQRES 8 C 257 SER THR MET ASP ILE VAL ASP ILE ASN PRO ASP MET LEU SEQRES 9 C 257 LYS GLU GLY GLU LYS ARG ALA MET GLU GLN GLY LYS TYR SEQRES 10 C 257 PHE LYS ASP PRO ARG VAL ARG PHE LEU VAL SER ASN GLY SEQRES 11 C 257 GLU LYS LEU GLU GLU ILE ASP SER ASP SER LYS ASP ILE SEQRES 12 C 257 TYR THR VAL SER PHE GLY ILE ARG ASN PHE THR ASP ILE SEQRES 13 C 257 GLN LYS GLY LEU ASN THR ALA TYR ARG VAL LEU LYS PRO SEQRES 14 C 257 GLY GLY ILE PHE TYR CYS LEU GLU PHE SER LYS ILE GLU SEQRES 15 C 257 ASN PRO LEU MET ASP PHE ALA TYR GLN GLN TRP ALA LYS SEQRES 16 C 257 VAL LEU PRO VAL MET GLY SER MET ILE ALA ASN ASP TYR SEQRES 17 C 257 ASP SER TYR GLN TYR LEU VAL GLU SER ILE GLU ARG PHE SEQRES 18 C 257 PRO ASP GLN GLU THR PHE LYS SER MET ILE GLU LYS ALA SEQRES 19 C 257 GLY PHE LYS SER ALA GLY TYR GLU SER LEU THR PHE GLY SEQRES 20 C 257 ILE CYS ALA ILE HIS TRP GLY ILE LYS VAL SEQRES 1 B 257 MET GLY HIS HIS HIS HIS HIS GLN HIS MET SER THR LYS SEQRES 2 B 257 GLN LYS LEU VAL GLY ASP VAL PHE SER SER VAL ALA ASN SEQRES 3 B 257 ARG TYR ASP LEU MET ASN ASP VAL MET SER LEU GLY ILE SEQRES 4 B 257 HIS ARG LEU TRP LYS ASP HIS PHE ILE ASN LYS LEU ASP SEQRES 5 B 257 ALA GLY LYS ARG PRO ASN SER THR THR PRO LEU ASN PHE SEQRES 6 B 257 ILE ASP VAL ALA GLY GLY SER GLY ASP ILE ALA PHE GLY SEQRES 7 B 257 LEU LEU ASP HIS ALA GLU SER LYS PHE GLY ASP THR GLU SEQRES 8 B 257 SER THR MET ASP ILE VAL ASP ILE ASN PRO ASP MET LEU SEQRES 9 B 257 LYS GLU GLY GLU LYS ARG ALA MET GLU GLN GLY LYS TYR SEQRES 10 B 257 PHE LYS ASP PRO ARG VAL ARG PHE LEU VAL SER ASN GLY SEQRES 11 B 257 GLU LYS LEU GLU GLU ILE ASP SER ASP SER LYS ASP ILE SEQRES 12 B 257 TYR THR VAL SER PHE GLY ILE ARG ASN PHE THR ASP ILE SEQRES 13 B 257 GLN LYS GLY LEU ASN THR ALA TYR ARG VAL LEU LYS PRO SEQRES 14 B 257 GLY GLY ILE PHE TYR CYS LEU GLU PHE SER LYS ILE GLU SEQRES 15 B 257 ASN PRO LEU MET ASP PHE ALA TYR GLN GLN TRP ALA LYS SEQRES 16 B 257 VAL LEU PRO VAL MET GLY SER MET ILE ALA ASN ASP TYR SEQRES 17 B 257 ASP SER TYR GLN TYR LEU VAL GLU SER ILE GLU ARG PHE SEQRES 18 B 257 PRO ASP GLN GLU THR PHE LYS SER MET ILE GLU LYS ALA SEQRES 19 B 257 GLY PHE LYS SER ALA GLY TYR GLU SER LEU THR PHE GLY SEQRES 20 B 257 ILE CYS ALA ILE HIS TRP GLY ILE LYS VAL HET TAM A 601 11 HET TAM C 601 11 HETNAM TAM TRIS(HYDROXYETHYL)AMINOMETHANE FORMUL 5 TAM 2(C7 H17 N O3) FORMUL 7 HOH *435(H2 O) HELIX 1 1 SER A 73 LEU A 87 1 15 HELIX 2 2 ILE A 89 ASP A 102 1 14 HELIX 3 3 GLY A 123 GLY A 138 1 16 HELIX 4 4 ASN A 150 GLY A 165 1 16 HELIX 5 5 GLY A 199 PHE A 203 5 5 HELIX 6 6 ASP A 205 VAL A 216 1 12 HELIX 7 7 ASN A 233 ASN A 256 1 24 HELIX 8 8 ASP A 257 PHE A 271 1 15 HELIX 9 9 ASP A 273 ALA A 284 1 12 HELIX 10 10 THR A 295 GLY A 297 5 3 HELIX 11 11 VAL D 74 SER D 86 1 13 HELIX 12 12 ILE D 89 ASP D 102 1 14 HELIX 13 13 GLY D 123 GLY D 138 1 16 HELIX 14 14 ASN D 150 GLY D 165 1 16 HELIX 15 15 GLY D 199 PHE D 203 5 5 HELIX 16 16 ASP D 205 VAL D 216 1 12 HELIX 17 17 ASN D 233 ASN D 256 1 24 HELIX 18 18 ASP D 257 PHE D 271 1 15 HELIX 19 19 ASP D 273 ALA D 284 1 12 HELIX 20 20 THR D 295 GLY D 297 5 3 HELIX 21 21 VAL C 74 LEU C 87 1 14 HELIX 22 22 ILE C 89 ASP C 102 1 14 HELIX 23 23 GLY C 123 GLY C 138 1 16 HELIX 24 24 ASN C 150 GLY C 165 1 16 HELIX 25 25 GLY C 199 PHE C 203 5 5 HELIX 26 26 ASP C 205 VAL C 216 1 12 HELIX 27 27 ASN C 233 ASN C 256 1 24 HELIX 28 28 ASP C 257 PHE C 271 1 15 HELIX 29 29 ASP C 273 ALA C 284 1 12 HELIX 30 30 THR C 295 GLY C 297 5 3 HELIX 31 31 VAL B 74 LEU B 87 1 14 HELIX 32 32 ILE B 89 ASP B 102 1 14 HELIX 33 33 GLY B 123 GLY B 138 1 16 HELIX 34 34 ASN B 150 GLY B 165 1 16 HELIX 35 35 GLY B 199 PHE B 203 5 5 HELIX 36 36 ASP B 205 VAL B 216 1 12 HELIX 37 37 ASN B 233 ASN B 256 1 24 HELIX 38 38 ASP B 257 PHE B 271 1 15 HELIX 39 39 ASP B 273 GLY B 285 1 13 HELIX 40 40 THR B 295 GLY B 297 5 3 SHEET 1 A 7 VAL A 173 VAL A 177 0 SHEET 2 A 7 THR A 143 ASP A 148 1 N ILE A 146 O LEU A 176 SHEET 3 A 7 ASN A 114 VAL A 118 1 N PHE A 115 O THR A 143 SHEET 4 A 7 LYS A 191 SER A 197 1 O ILE A 193 N ILE A 116 SHEET 5 A 7 LEU A 217 PHE A 228 1 O LYS A 218 N LYS A 191 SHEET 6 A 7 CYS A 299 LYS A 306 -1 O GLY A 304 N PHE A 223 SHEET 7 A 7 PHE A 286 LEU A 294 -1 N LEU A 294 O CYS A 299 SHEET 1 B 7 VAL D 173 VAL D 177 0 SHEET 2 B 7 THR D 143 ASP D 148 1 N ILE D 146 O ARG D 174 SHEET 3 B 7 ASN D 114 VAL D 118 1 N PHE D 115 O THR D 143 SHEET 4 B 7 LYS D 191 SER D 197 1 O ILE D 193 N ILE D 116 SHEET 5 B 7 LEU D 217 PHE D 228 1 O TYR D 224 N TYR D 194 SHEET 6 B 7 CYS D 299 ILE D 305 -1 O GLY D 304 N PHE D 223 SHEET 7 B 7 LYS D 287 LEU D 294 -1 N LYS D 287 O ILE D 305 SHEET 1 C 7 VAL C 173 VAL C 177 0 SHEET 2 C 7 THR C 143 ASP C 148 1 N ILE C 146 O ARG C 174 SHEET 3 C 7 ASN C 114 VAL C 118 1 N PHE C 115 O THR C 143 SHEET 4 C 7 LYS C 191 SER C 197 1 O ILE C 193 N ILE C 116 SHEET 5 C 7 LEU C 217 PHE C 228 1 O LYS C 218 N LYS C 191 SHEET 6 C 7 CYS C 299 ILE C 305 -1 O GLY C 304 N PHE C 223 SHEET 7 C 7 LYS C 287 LEU C 294 -1 N LYS C 287 O ILE C 305 SHEET 1 D 7 VAL B 173 VAL B 177 0 SHEET 2 D 7 THR B 143 ASP B 148 1 N ILE B 146 O ARG B 174 SHEET 3 D 7 ASN B 114 VAL B 118 1 N PHE B 115 O THR B 143 SHEET 4 D 7 LYS B 191 SER B 197 1 O THR B 195 N VAL B 118 SHEET 5 D 7 LEU B 217 PHE B 228 1 O LYS B 218 N LYS B 191 SHEET 6 D 7 CYS B 299 ILE B 305 -1 O HIS B 302 N CYS B 225 SHEET 7 D 7 LYS B 287 LEU B 294 -1 N LYS B 287 O ILE B 305 SITE 1 AC1 1 LEU A 235 SITE 1 AC2 1 LEU C 235 CRYST1 193.270 75.640 84.480 90.00 90.85 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005174 0.000000 0.000077 0.00000 SCALE2 0.000000 0.013221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011838 0.00000