HEADER LIGASE 08-JAN-14 4OBY TITLE CRYSTAL STRUCTURE OF E.COLI ARGINYL-TRNA SYNTHETASE AND LIGAND BINDING TITLE 2 STUDIES REVEALED KEY RESIDUES IN ARGININE RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARGINYL-TRNA SYNTHETASE, ARGRS; COMPND 5 EC: 6.1.1.19; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ARGS, B1876, JW1865; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.BI,Y.ZHENG,J.DONG,F.GAO,J.WANG,Y.WANG,W.GONG REVDAT 4 20-SEP-23 4OBY 1 REMARK SEQADV REVDAT 3 17-JUL-19 4OBY 1 REMARK REVDAT 2 02-APR-14 4OBY 1 JRNL REVDAT 1 12-FEB-14 4OBY 0 JRNL AUTH K.BI,Y.ZHENG,F.GAO,J.DONG,J.WANG,Y.WANG,W.GONG JRNL TITL CRYSTAL STRUCTURE OF E. COLI ARGINYL-TRNA SYNTHETASE AND JRNL TITL 2 LIGAND BINDING STUDIES REVEALED KEY RESIDUES IN ARGININE JRNL TITL 3 RECOGNITION. JRNL REF PROTEIN CELL V. 5 151 2014 JRNL REFN ISSN 1674-800X JRNL PMID 24474195 JRNL DOI 10.1007/S13238-013-0012-1 REMARK 2 REMARK 2 RESOLUTION. 2.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 20270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.9098 - 4.9208 0.98 2771 142 0.1549 0.2052 REMARK 3 2 4.9208 - 3.9073 1.00 2784 159 0.1510 0.2196 REMARK 3 3 3.9073 - 3.4138 0.99 2768 148 0.2087 0.2858 REMARK 3 4 3.4138 - 3.1019 0.99 2718 169 0.2811 0.3888 REMARK 3 5 3.1019 - 2.8797 1.00 2774 135 0.2523 0.3850 REMARK 3 6 2.8797 - 2.7099 1.00 2742 150 0.2563 0.3175 REMARK 3 7 2.7099 - 2.5743 0.95 2668 142 0.3278 0.4385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4338 REMARK 3 ANGLE : 1.250 5887 REMARK 3 CHIRALITY : 0.047 671 REMARK 3 PLANARITY : 0.006 766 REMARK 3 DIHEDRAL : 14.794 1535 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 27.0681 66.6646 20.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.3121 REMARK 3 T33: 0.3570 T12: 0.0371 REMARK 3 T13: 0.0227 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.1807 L22: 1.7686 REMARK 3 L33: 1.4263 L12: -0.3722 REMARK 3 L13: 0.3876 L23: -0.4880 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.0317 S13: -0.0207 REMARK 3 S21: -0.0135 S22: 0.1036 S23: 0.1561 REMARK 3 S31: -0.2156 S32: -0.2245 S33: -0.0402 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20541 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1BS2 AS ENSEMBLE 1 AND 3GDZ AS ENSEMBLE 2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MG/ML PROTEIN SAMPLE IN 20 MM TRIS, REMARK 280 PH 7.5, RESERVIOR SOLUTION - 50MM HEPES (PH 7.2), 100MM SODIUM REMARK 280 ACETATE, 22% PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.29950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.06800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.29950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 47.06800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLN A 178 REMARK 465 GLU A 179 REMARK 465 ASN A 180 REMARK 465 ALA A 181 REMARK 465 GLY A 182 REMARK 465 GLU A 183 REMARK 465 MET A 184 REMARK 465 GLU A 185 REMARK 465 LEU A 186 REMARK 465 ALA A 187 REMARK 465 ASP A 203 REMARK 465 GLU A 204 REMARK 465 MET A 577 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 VAL A 124 CG1 CG2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 ARG A 209 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 212 CG OD1 ND2 REMARK 470 VAL A 214 CG1 CG2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 SER A 219 OG REMARK 470 ASP A 221 CG OD1 OD2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ASP A 253 CG OD1 OD2 REMARK 470 PRO A 263 CG CD REMARK 470 VAL A 279 CG1 CG2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ASN A 294 CG OD1 ND2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 PRO A 410 CG CD REMARK 470 ASP A 411 CG OD1 OD2 REMARK 470 MET A 412 CG SD CE REMARK 470 GLU A 416 CB CG CD OE1 OE2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 ILE A 476 CG1 CG2 CD1 REMARK 470 ASP A 477 CG OD1 OD2 REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 GLN A 480 CG CD OE1 NE2 REMARK 470 LEU A 481 CG CD1 CD2 REMARK 470 ILE A 487 CG1 CG2 CD1 REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 ASP A 491 CG OD1 OD2 REMARK 470 ILE A 539 CG1 CG2 CD1 REMARK 470 LEU A 540 CG CD1 CD2 REMARK 470 SER A 541 OG REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 ASN A 544 CG OD1 ND2 REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 ARG A 576 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 12 O ALA A 22 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 363 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 PRO A 379 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 110 174.11 -57.57 REMARK 500 SER A 120 -81.83 78.91 REMARK 500 ALA A 125 -5.11 74.51 REMARK 500 ASN A 157 91.61 -67.73 REMARK 500 ASP A 221 81.71 20.83 REMARK 500 ASN A 247 48.11 38.08 REMARK 500 LEU A 260 -33.93 -36.63 REMARK 500 LYS A 275 -82.83 -113.97 REMARK 500 GLU A 280 -174.37 -65.37 REMARK 500 SER A 281 -149.44 59.27 REMARK 500 ALA A 284 -172.46 54.51 REMARK 500 ASP A 308 -18.27 -46.20 REMARK 500 ASP A 338 137.69 -33.00 REMARK 500 VAL A 362 90.21 76.26 REMARK 500 LEU A 364 91.16 52.84 REMARK 500 PRO A 379 3.62 -50.29 REMARK 500 PHE A 380 105.08 77.35 REMARK 500 VAL A 388 99.15 64.88 REMARK 500 PRO A 410 -38.80 -173.46 REMARK 500 ALA A 414 -77.68 22.89 REMARK 500 GLU A 416 -79.23 -80.13 REMARK 500 ASP A 445 104.37 -168.09 REMARK 500 LYS A 473 79.42 -62.25 REMARK 500 ALA A 474 -78.16 -168.86 REMARK 500 ASP A 477 74.02 -166.67 REMARK 500 VAL A 486 102.62 32.40 REMARK 500 ARG A 489 -31.74 -132.46 REMARK 500 LEU A 540 104.23 71.14 REMARK 500 ALA A 542 -77.38 -157.02 REMARK 500 ASN A 544 -109.63 48.35 REMARK 500 VAL A 574 -164.12 -103.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 601 DBREF 4OBY A 1 577 UNP P11875 SYR_ECOLI 1 577 SEQADV 4OBY SER A 0 UNP P11875 EXPRESSION TAG SEQRES 1 A 578 SER MET ASN ILE GLN ALA LEU LEU SER GLU LYS VAL ARG SEQRES 2 A 578 GLN ALA MET ILE ALA ALA GLY ALA PRO ALA ASP CYS GLU SEQRES 3 A 578 PRO GLN VAL ARG GLN SER ALA LYS VAL GLN PHE GLY ASP SEQRES 4 A 578 TYR GLN ALA ASN GLY MET MET ALA VAL ALA LYS LYS LEU SEQRES 5 A 578 GLY MET ALA PRO ARG GLN LEU ALA GLU GLN VAL LEU THR SEQRES 6 A 578 HIS LEU ASP LEU ASN GLY ILE ALA SER LYS VAL GLU ILE SEQRES 7 A 578 ALA GLY PRO GLY PHE ILE ASN ILE PHE LEU ASP PRO ALA SEQRES 8 A 578 PHE LEU ALA GLU HIS VAL GLN GLN ALA LEU ALA SER ASP SEQRES 9 A 578 ARG LEU GLY VAL ALA THR PRO GLU LYS GLN THR ILE VAL SEQRES 10 A 578 VAL ASP TYR SER ALA PRO ASN VAL ALA LYS GLU MET HIS SEQRES 11 A 578 VAL GLY HIS LEU ARG SER THR ILE ILE GLY ASP ALA ALA SEQRES 12 A 578 VAL ARG THR LEU GLU PHE LEU GLY HIS LYS VAL ILE ARG SEQRES 13 A 578 ALA ASN HIS VAL GLY ASP TRP GLY THR GLN PHE GLY MET SEQRES 14 A 578 LEU ILE ALA TRP LEU GLU LYS GLN GLN GLN GLU ASN ALA SEQRES 15 A 578 GLY GLU MET GLU LEU ALA ASP LEU GLU GLY PHE TYR ARG SEQRES 16 A 578 ASP ALA LYS LYS HIS TYR ASP GLU ASP GLU GLU PHE ALA SEQRES 17 A 578 GLU ARG ALA ARG ASN TYR VAL VAL LYS LEU GLN SER GLY SEQRES 18 A 578 ASP GLU TYR PHE ARG GLU MET TRP ARG LYS LEU VAL ASP SEQRES 19 A 578 ILE THR MET THR GLN ASN GLN ILE THR TYR ASP ARG LEU SEQRES 20 A 578 ASN VAL THR LEU THR ARG ASP ASP VAL MET GLY GLU SER SEQRES 21 A 578 LEU TYR ASN PRO MET LEU PRO GLY ILE VAL ALA ASP LEU SEQRES 22 A 578 LYS ALA LYS GLY LEU ALA VAL GLU SER GLU GLY ALA THR SEQRES 23 A 578 VAL VAL PHE LEU ASP GLU PHE LYS ASN LYS GLU GLY GLU SEQRES 24 A 578 PRO MET GLY VAL ILE ILE GLN LYS LYS ASP GLY GLY TYR SEQRES 25 A 578 LEU TYR THR THR THR ASP ILE ALA CYS ALA LYS TYR ARG SEQRES 26 A 578 TYR GLU THR LEU HIS ALA ASP ARG VAL LEU TYR TYR ILE SEQRES 27 A 578 ASP SER ARG GLN HIS GLN HIS LEU MET GLN ALA TRP ALA SEQRES 28 A 578 ILE VAL ARG LYS ALA GLY TYR VAL PRO GLU SER VAL PRO SEQRES 29 A 578 LEU GLU HIS HIS MET PHE GLY MET MET LEU GLY LYS ASP SEQRES 30 A 578 GLY LYS PRO PHE LYS THR ARG ALA GLY GLY THR VAL LYS SEQRES 31 A 578 LEU ALA ASP LEU LEU ASP GLU ALA LEU GLU ARG ALA ARG SEQRES 32 A 578 ARG LEU VAL ALA GLU LYS ASN PRO ASP MET PRO ALA ASP SEQRES 33 A 578 GLU LEU GLU LYS LEU ALA ASN ALA VAL GLY ILE GLY ALA SEQRES 34 A 578 VAL LYS TYR ALA ASP LEU SER LYS ASN ARG THR THR ASP SEQRES 35 A 578 TYR ILE PHE ASP TRP ASP ASN MET LEU ALA PHE GLU GLY SEQRES 36 A 578 ASN THR ALA PRO TYR MET GLN TYR ALA TYR THR ARG VAL SEQRES 37 A 578 LEU SER VAL PHE ARG LYS ALA GLU ILE ASP GLU GLU GLN SEQRES 38 A 578 LEU ALA ALA ALA PRO VAL ILE ILE ARG GLU ASP ARG GLU SEQRES 39 A 578 ALA GLN LEU ALA ALA ARG LEU LEU GLN PHE GLU GLU THR SEQRES 40 A 578 LEU THR VAL VAL ALA ARG GLU GLY THR PRO HIS VAL MET SEQRES 41 A 578 CYS ALA TYR LEU TYR ASP LEU ALA GLY LEU PHE SER GLY SEQRES 42 A 578 PHE TYR GLU HIS CYS PRO ILE LEU SER ALA GLU ASN GLU SEQRES 43 A 578 GLU VAL ARG ASN SER ARG LEU LYS LEU ALA GLN LEU THR SEQRES 44 A 578 ALA LYS THR LEU LYS LEU GLY LEU ASP THR LEU GLY ILE SEQRES 45 A 578 GLU THR VAL GLU ARG MET HET ARG A 601 12 HETNAM ARG ARGININE FORMUL 2 ARG C6 H15 N4 O2 1+ FORMUL 3 HOH *30(H2 O) HELIX 1 1 ASN A 2 ALA A 18 1 17 HELIX 2 2 LYS A 33 GLY A 37 5 5 HELIX 3 3 GLY A 43 LEU A 51 1 9 HELIX 4 4 ALA A 54 LEU A 66 1 13 HELIX 5 5 ASP A 88 SER A 102 1 15 HELIX 6 6 HIS A 129 GLY A 150 1 22 HELIX 7 7 THR A 164 GLN A 177 1 14 HELIX 8 8 LEU A 189 GLU A 202 1 14 HELIX 9 9 PHE A 206 SER A 219 1 14 HELIX 10 10 ASP A 221 LEU A 246 1 26 HELIX 11 11 THR A 251 VAL A 255 5 5 HELIX 12 12 GLY A 257 PRO A 263 5 7 HELIX 13 13 MET A 264 ALA A 274 1 11 HELIX 14 14 ASP A 290 LYS A 293 5 4 HELIX 15 15 LEU A 312 THR A 327 1 16 HELIX 16 16 ASP A 338 ARG A 340 5 3 HELIX 17 17 GLN A 341 ALA A 355 1 15 HELIX 18 18 LYS A 389 ALA A 406 1 18 HELIX 19 19 GLU A 416 SER A 435 1 20 HELIX 20 20 ASP A 445 LEU A 450 1 6 HELIX 21 21 THR A 456 LYS A 473 1 18 HELIX 22 22 ASP A 477 ALA A 482 1 6 HELIX 23 23 GLU A 490 GLN A 502 1 13 HELIX 24 24 GLN A 502 GLY A 514 1 13 HELIX 25 25 PRO A 516 HIS A 536 1 21 HELIX 26 26 GLU A 545 GLY A 570 1 26 SHEET 1 A 4 VAL A 28 GLN A 30 0 SHEET 2 A 4 TYR A 39 ALA A 41 -1 O GLN A 40 N ARG A 29 SHEET 3 A 4 PHE A 82 LEU A 87 -1 O ILE A 85 N TYR A 39 SHEET 4 A 4 ALA A 72 ALA A 78 -1 N GLU A 76 O ASN A 84 SHEET 1 B 4 LYS A 152 ARG A 155 0 SHEET 2 B 4 THR A 114 ASP A 118 1 N ILE A 115 O ILE A 154 SHEET 3 B 4 ARG A 332 TYR A 335 1 O LEU A 334 N ASP A 118 SHEET 4 B 4 GLU A 365 HIS A 366 1 O GLU A 365 N VAL A 333 SHEET 1 C 2 THR A 285 LEU A 289 0 SHEET 2 C 2 MET A 300 GLN A 305 -1 O ILE A 304 N THR A 285 SHEET 1 D 2 MET A 372 LEU A 373 0 SHEET 2 D 2 TYR A 442 ILE A 443 1 O TYR A 442 N LEU A 373 CISPEP 1 LYS A 275 GLY A 276 0 -12.42 CISPEP 2 LEU A 540 SER A 541 0 7.81 SITE 1 AC1 10 ASP A 118 ALA A 121 ASN A 123 HIS A 132 SITE 2 AC1 10 HIS A 158 TYR A 313 ASP A 317 TYR A 335 SITE 3 AC1 10 ILE A 337 GLN A 341 CRYST1 118.599 94.136 62.717 90.00 110.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008432 0.000000 0.003157 0.00000 SCALE2 0.000000 0.010623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017026 0.00000