HEADER APOPTOSIS/IMMUNE SYSTEM 09-JAN-14 4OD2 TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF AN ANTI-DR5 ANTIBODY BOUND TO TITLE 2 DR5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB FRAGMENT OF DROZITUMAB, LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB FRAGMENT OF DROZITUMAB, HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B; COMPND 11 CHAIN: S; COMPND 12 FRAGMENT: UNP RESIDUES 73-183; COMPND 13 SYNONYM: DEATH RECEPTOR 5, TNF-RELATED APOPTOSIS-INDUCING LIGAND COMPND 14 RECEPTOR 2, TRAIL RECEPTOR 2, TRAIL-R2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: DEATH RECEPTOR 5, DR5, KILLER, TNFRSF10B, TRAILR2, TRICK2, SOURCE 18 UNQ160/PRO186, ZTNFR9; SOURCE 19 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: HI5 CELLS; SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS TRANSFER VECTOR KEYWDS IGG, FAB FRAGMENT, CRD, TNFSF, APOPTOSIS-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.HYMOWITZ,D.COMPAAN REVDAT 3 20-SEP-23 4OD2 1 REMARK REVDAT 2 16-APR-14 4OD2 1 SOURCE REVDAT 1 05-FEB-14 4OD2 0 JRNL AUTH C.ADAMS,K.TOTPAL,D.LAWRENCE,S.MARSTERS,R.PITTI,S.YEE,S.ROSS, JRNL AUTH 2 L.DEFORGE,H.KOEPPEN,M.SAGOLLA,D.COMPAAN,H.LOWMAN,S.HYMOWITZ, JRNL AUTH 3 A.ASHKENAZI JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE INTERACTION JRNL TITL 2 BETWEEN THE AGONISTIC MONOCLONAL ANTIBODY APOMAB AND THE JRNL TITL 3 PROAPOPTOTIC RECEPTOR DR5. JRNL REF CELL DEATH DIFFER. V. 15 751 2008 JRNL REFN ISSN 1350-9047 JRNL PMID 18219321 JRNL DOI 10.1038/SJ.CDD.4402306 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 10792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 501 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.75000 REMARK 3 B22 (A**2) : -8.75000 REMARK 3 B33 (A**2) : 13.12000 REMARK 3 B12 (A**2) : -4.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.654 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.566 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 73.538 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.899 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.829 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3994 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5441 ; 1.226 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;34.410 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 611 ;19.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.816 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 601 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3029 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8985 93.4963 4.6691 REMARK 3 T TENSOR REMARK 3 T11: 1.0662 T22: 0.7788 REMARK 3 T33: 0.3703 T12: 0.0973 REMARK 3 T13: 0.2865 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 3.7918 L22: 1.4266 REMARK 3 L33: 6.9440 L12: -0.7072 REMARK 3 L13: 0.1970 L23: -0.7352 REMARK 3 S TENSOR REMARK 3 S11: 0.3321 S12: 0.8276 S13: 0.4255 REMARK 3 S21: -0.9922 S22: -0.1684 S23: -0.6173 REMARK 3 S31: 0.2980 S32: -0.0043 S33: -0.1637 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9792 115.0678 -14.9912 REMARK 3 T TENSOR REMARK 3 T11: 1.3170 T22: 1.3247 REMARK 3 T33: 1.2582 T12: -0.1091 REMARK 3 T13: -0.0396 T23: 0.2848 REMARK 3 L TENSOR REMARK 3 L11: 9.5860 L22: 8.2091 REMARK 3 L33: 3.9265 L12: -8.3671 REMARK 3 L13: -2.1578 L23: 3.4644 REMARK 3 S TENSOR REMARK 3 S11: 0.9662 S12: 0.8181 S13: 2.8628 REMARK 3 S21: -1.6317 S22: -0.8042 S23: -2.1391 REMARK 3 S31: -0.9343 S32: -0.4374 S33: -0.1620 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2436 98.6073 18.1501 REMARK 3 T TENSOR REMARK 3 T11: 0.3171 T22: 0.3806 REMARK 3 T33: 0.4547 T12: -0.0387 REMARK 3 T13: -0.0565 T23: -0.1209 REMARK 3 L TENSOR REMARK 3 L11: 5.7654 L22: 7.1276 REMARK 3 L33: 3.9071 L12: -2.1723 REMARK 3 L13: 0.3399 L23: -1.3718 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.2331 S13: 0.0545 REMARK 3 S21: 0.0133 S22: -0.1925 S23: 1.2393 REMARK 3 S31: -0.1363 S32: -0.0991 S33: 0.1231 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 123 B 222 REMARK 3 ORIGIN FOR THE GROUP (A): -31.3972 111.2662 -16.2646 REMARK 3 T TENSOR REMARK 3 T11: 1.1113 T22: 2.4001 REMARK 3 T33: 1.2736 T12: -0.1754 REMARK 3 T13: -0.5806 T23: 0.0884 REMARK 3 L TENSOR REMARK 3 L11: 1.6630 L22: 7.2139 REMARK 3 L33: 9.6908 L12: 0.4420 REMARK 3 L13: 3.1096 L23: 3.1215 REMARK 3 S TENSOR REMARK 3 S11: -0.5868 S12: 0.5764 S13: 0.2870 REMARK 3 S21: -1.7375 S22: 0.2620 S23: 1.1032 REMARK 3 S31: -0.7272 S32: -0.9375 S33: 0.3248 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : S 22 S 122 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3773 93.6623 25.0819 REMARK 3 T TENSOR REMARK 3 T11: 0.6762 T22: 0.5167 REMARK 3 T33: 0.5634 T12: -0.0634 REMARK 3 T13: -0.1331 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 11.4990 L22: 2.9842 REMARK 3 L33: 1.4468 L12: 1.4372 REMARK 3 L13: -3.0615 L23: 0.2309 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: -0.6347 S13: -0.0276 REMARK 3 S21: 0.4608 S22: -0.3933 S23: -0.5470 REMARK 3 S31: -0.0229 S32: -0.1914 S33: 0.1341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10792 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30500 REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 8FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (7MG/ML IN 20 MM TRIS-HCL, 150 REMARK 280 MM NACL) WAS MIXED WITH EQUAL VOLUME OF WELL SOLUTION (30% PEG REMARK 280 4K, 0.1 M TRIS-HCL PH 8.5, 0.2M MGCL2), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 292K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 210 REMARK 465 GLU A 211 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 465 SER B 135 REMARK 465 SER B 136 REMARK 465 LYS B 137 REMARK 465 SER B 138 REMARK 465 THR B 139 REMARK 465 SER B 140 REMARK 465 GLY B 141 REMARK 465 GLY B 142 REMARK 465 SER B 223 REMARK 465 CYS B 224 REMARK 465 ASP B 225 REMARK 465 LYS B 226 REMARK 465 THR B 227 REMARK 465 HIS B 228 REMARK 465 THR B 229 REMARK 465 ALA B 230 REMARK 465 ALA B 231 REMARK 465 PRO B 232 REMARK 465 ARG S 20 REMARK 465 GLU S 93 REMARK 465 GLU S 94 REMARK 465 ASP S 95 REMARK 465 SER S 96 REMARK 465 VAL S 112 REMARK 465 LYS S 113 REMARK 465 VAL S 114 REMARK 465 GLY S 115 REMARK 465 VAL S 126 REMARK 465 HIS S 127 REMARK 465 LYS S 128 REMARK 465 GLU S 129 REMARK 465 SER S 130 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE S 123 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE S 123 CB ILE S 123 CG1 -0.299 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 57 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 ILE S 123 CG1 - CB - CG2 ANGL. DEV. = 22.0 DEGREES REMARK 500 ILE S 123 CA - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 110.64 4.61 REMARK 500 LEU A 13 124.76 -29.24 REMARK 500 ASP A 24 15.52 -46.99 REMARK 500 SER A 28 15.32 -140.34 REMARK 500 ALA A 31 -150.34 -67.81 REMARK 500 SER A 32 126.61 159.25 REMARK 500 PRO A 38 102.38 -47.78 REMARK 500 VAL A 45 -64.05 -104.09 REMARK 500 ALA A 49 -109.48 36.26 REMARK 500 ASN A 50 65.59 -156.59 REMARK 500 PRO A 57 139.57 -36.74 REMARK 500 ARG A 59 -37.35 -30.18 REMARK 500 GLU A 79 36.76 -79.82 REMARK 500 ASP A 90 -165.45 -72.89 REMARK 500 SER A 92 -88.14 -71.71 REMARK 500 ASP A 152 -77.38 61.16 REMARK 500 PRO A 165 145.61 -35.85 REMARK 500 ASN A 171 -14.45 76.08 REMARK 500 SER B 7 149.05 175.45 REMARK 500 ARG B 38 -168.36 -112.69 REMARK 500 GLN B 39 111.07 -175.26 REMARK 500 PRO B 41 114.62 -39.73 REMARK 500 LYS B 43 81.74 -150.18 REMARK 500 VAL B 48 -64.06 -95.80 REMARK 500 ASN B 77 41.42 35.80 REMARK 500 SER B 85 76.14 45.85 REMARK 500 THR B 91 104.77 -54.69 REMARK 500 LEU B 132 73.69 -108.59 REMARK 500 ASP B 152 82.05 57.71 REMARK 500 PRO B 155 -151.96 -95.73 REMARK 500 PRO B 157 -164.85 -106.80 REMARK 500 GLN S 48 -61.90 -95.16 REMARK 500 PRO S 119 1.46 -68.22 REMARK 500 ASP S 122 -170.45 -68.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D0G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DR5 BOUND TO APO2L/TRAIL DBREF 4OD2 S 20 130 UNP O14763 TR10B_HUMAN 73 183 DBREF 4OD2 A 1 213 PDB 4OD2 4OD2 1 213 DBREF 4OD2 B 1 232 PDB 4OD2 4OD2 1 232 SEQRES 1 A 213 SER GLU LEU THR GLN ASP PRO ALA VAL SER VAL ALA LEU SEQRES 2 A 213 GLY GLN THR VAL ARG ILE THR CYS SER GLY ASP SER LEU SEQRES 3 A 213 ARG SER TYR TYR ALA SER TRP TYR GLN GLN LYS PRO GLY SEQRES 4 A 213 GLN ALA PRO VAL LEU VAL ILE TYR GLY ALA ASN ASN ARG SEQRES 5 A 213 PRO SER GLY ILE PRO ASP ARG PHE SER GLY SER SER SER SEQRES 6 A 213 GLY ASN THR ALA SER LEU THR ILE THR GLY ALA GLN ALA SEQRES 7 A 213 GLU ASP GLU ALA ASP TYR TYR CYS ASN SER ALA ASP SER SEQRES 8 A 213 SER GLY ASN HIS VAL VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 A 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 A 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 A 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 A 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 A 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 A 213 PRO GLU GLN TRP LYS SER HIS LYS SER TYR SER CYS GLN SEQRES 16 A 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 A 213 PRO THR GLU CYS SER SEQRES 1 B 232 GLU VAL GLN LEU VAL GLN SER GLY GLY GLY VAL GLU ARG SEQRES 2 B 232 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 232 PHE THR PHE ASP ASP TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 B 232 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ASN SEQRES 5 B 232 TRP GLN GLY GLY SER THR GLY TYR ALA ASP SER VAL LYS SEQRES 6 B 232 GLY ARG VAL THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 B 232 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 232 ALA VAL TYR TYR CYS ALA LYS ILE LEU GLY ALA GLY ARG SEQRES 9 B 232 GLY TRP TYR PHE ASP TYR TRP GLY LYS GLY THR THR VAL SEQRES 10 B 232 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 B 232 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 B 232 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 B 232 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 B 232 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 B 232 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 B 232 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 B 232 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 B 232 LYS SER CYS ASP LYS THR HIS THR ALA ALA PRO SEQRES 1 S 111 ARG SER SER PRO SER GLU GLY LEU CYS PRO PRO GLY HIS SEQRES 2 S 111 HIS ILE SER GLU ASP GLY ARG ASP CYS ILE SER CYS LYS SEQRES 3 S 111 TYR GLY GLN ASP TYR SER THR HIS TRP ASN ASP LEU LEU SEQRES 4 S 111 PHE CYS LEU ARG CYS THR ARG CYS ASP SER GLY GLU VAL SEQRES 5 S 111 GLU LEU SER PRO CYS THR THR THR ARG ASN THR VAL CYS SEQRES 6 S 111 GLN CYS GLU GLU GLY THR PHE ARG GLU GLU ASP SER PRO SEQRES 7 S 111 GLU MET CYS ARG LYS CYS ARG THR GLY CYS PRO ARG GLY SEQRES 8 S 111 MET VAL LYS VAL GLY ASP CYS THR PRO TRP SER ASP ILE SEQRES 9 S 111 GLU CYS VAL HIS LYS GLU SER HELIX 1 1 GLN A 77 GLU A 81 5 5 HELIX 2 2 SER A 122 GLN A 127 1 6 HELIX 3 3 THR A 182 SER A 188 1 7 HELIX 4 4 SER B 164 ALA B 166 5 3 HELIX 5 5 PRO B 193 GLY B 198 5 6 HELIX 6 6 LYS B 209 ASN B 212 5 4 HELIX 7 7 PRO S 23 LEU S 27 5 5 SHEET 1 A 5 ALA A 8 ALA A 12 0 SHEET 2 A 5 THR A 102 LEU A 107 1 O LEU A 107 N VAL A 11 SHEET 3 A 5 ALA A 82 ALA A 89 -1 N TYR A 84 O THR A 102 SHEET 4 A 5 TRP A 33 GLN A 36 -1 N GLN A 36 O ASP A 83 SHEET 5 A 5 VAL A 43 ILE A 46 -1 O VAL A 45 N TRP A 33 SHEET 1 B 4 ALA A 8 ALA A 12 0 SHEET 2 B 4 THR A 102 LEU A 107 1 O LEU A 107 N VAL A 11 SHEET 3 B 4 ALA A 82 ALA A 89 -1 N TYR A 84 O THR A 102 SHEET 4 B 4 VAL A 96 PHE A 98 -1 O VAL A 97 N SER A 88 SHEET 1 C 3 VAL A 17 SER A 22 0 SHEET 2 C 3 THR A 68 ILE A 73 -1 O ALA A 69 N CYS A 21 SHEET 3 C 3 PHE A 60 SER A 65 -1 N SER A 61 O THR A 72 SHEET 1 D 4 SER A 115 PHE A 119 0 SHEET 2 D 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 D 4 TYR A 173 LEU A 181 -1 O TYR A 173 N PHE A 140 SHEET 4 D 4 VAL A 160 THR A 162 -1 N GLU A 161 O TYR A 178 SHEET 1 E 4 SER A 115 PHE A 119 0 SHEET 2 E 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 E 4 TYR A 173 LEU A 181 -1 O TYR A 173 N PHE A 140 SHEET 4 E 4 SER A 166 LYS A 167 -1 N SER A 166 O ALA A 174 SHEET 1 F 4 SER A 154 PRO A 155 0 SHEET 2 F 4 THR A 146 ALA A 151 -1 N ALA A 151 O SER A 154 SHEET 3 F 4 TYR A 192 HIS A 198 -1 O GLN A 195 N ALA A 148 SHEET 4 F 4 SER A 201 VAL A 207 -1 O SER A 201 N HIS A 198 SHEET 1 G 4 GLN B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 G 4 SER B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 G 4 VAL B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 H 6 GLY B 10 GLU B 12 0 SHEET 2 H 6 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 H 6 ALA B 92 ILE B 99 -1 N TYR B 94 O THR B 115 SHEET 4 H 6 MET B 34 ALA B 40 -1 N SER B 35 O ALA B 97 SHEET 5 H 6 LYS B 43 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 THR B 58 TYR B 60 -1 O GLY B 59 N GLY B 50 SHEET 1 I 4 GLY B 10 GLU B 12 0 SHEET 2 I 4 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 I 4 ALA B 92 ILE B 99 -1 N TYR B 94 O THR B 115 SHEET 4 I 4 PHE B 108 TRP B 111 -1 O TYR B 110 N LYS B 98 SHEET 1 J 4 SER B 128 LEU B 132 0 SHEET 2 J 4 ALA B 144 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 J 4 TYR B 184 VAL B 192 -1 O LEU B 186 N VAL B 150 SHEET 4 J 4 VAL B 171 THR B 173 -1 N HIS B 172 O VAL B 189 SHEET 1 K 4 SER B 128 LEU B 132 0 SHEET 2 K 4 ALA B 144 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 K 4 TYR B 184 VAL B 192 -1 O LEU B 186 N VAL B 150 SHEET 4 K 4 VAL B 177 LEU B 178 -1 N VAL B 177 O SER B 185 SHEET 1 L 3 THR B 159 TRP B 162 0 SHEET 2 L 3 ILE B 203 HIS B 208 -1 O ASN B 207 N THR B 159 SHEET 3 L 3 THR B 213 LYS B 218 -1 O VAL B 215 N VAL B 206 SHEET 1 M 2 HIS S 32 ILE S 34 0 SHEET 2 M 2 CYS S 41 SER S 43 -1 O ILE S 42 N HIS S 33 SHEET 1 N 2 ASP S 49 TYR S 50 0 SHEET 2 N 2 LEU S 61 ARG S 62 -1 O LEU S 61 N TYR S 50 SHEET 1 O 2 GLU S 70 SER S 74 0 SHEET 2 O 2 VAL S 83 CYS S 86 -1 O GLN S 85 N VAL S 71 SHEET 1 P 2 THR S 90 PHE S 91 0 SHEET 2 P 2 ARG S 101 LYS S 102 -1 O ARG S 101 N PHE S 91 SSBOND 1 CYS A 21 CYS A 86 1555 1555 2.05 SSBOND 2 CYS A 135 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 4 CYS B 148 CYS B 204 1555 1555 2.03 SSBOND 5 CYS S 28 CYS S 41 1555 1555 2.07 SSBOND 6 CYS S 44 CYS S 60 1555 1555 2.05 SSBOND 7 CYS S 63 CYS S 76 1555 1555 2.01 SSBOND 8 CYS S 66 CYS S 84 1555 1555 2.02 SSBOND 9 CYS S 86 CYS S 100 1555 1555 2.03 SSBOND 10 CYS S 103 CYS S 117 1555 1555 2.05 SSBOND 11 CYS S 107 CYS S 125 1555 1555 2.04 CISPEP 1 TYR A 141 PRO A 142 0 -2.06 CISPEP 2 PHE B 154 PRO B 155 0 -5.51 CISPEP 3 GLU B 156 PRO B 157 0 -0.74 CRYST1 128.317 128.317 68.386 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007793 0.004499 0.000000 0.00000 SCALE2 0.000000 0.008999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014623 0.00000