HEADER OXIDOREDUCTASE/PEPTIDE 10-JAN-14 4OD7 TITLE COMPLEX STRUCTURE OF PROTEUS MIRABLIS DSBA (C30S) WITH A NON- TITLE 2 COVALENTLY BOUND PEPTIDE PWATCDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: (ACE)PWATCDS(NH2) PEPTIDE; COMPND 8 CHAIN: D, E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROTEUS MIRABILIS; SOURCE 3 ORGANISM_TAXID: 529507; SOURCE 4 STRAIN: HI4320; SOURCE 5 GENE: DSBA, PMI2828; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS OXIDATIVE FOLDING PROTEIN, VIRULENCE FACTOR MATURATION PROTEIN, KEYWDS 2 DISULFIDE OXIDOREDUCTASE, THIOREDOXIN, DSBA, DITHIOL EXCHANGE, DSBB, KEYWDS 3 PERIPLASMIC, OXIDOREDUCTASE-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.KURTH,L.PREMKUMAR,J.L.MARTIN REVDAT 4 20-SEP-23 4OD7 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 4OD7 1 REMARK REVDAT 2 30-JUL-14 4OD7 1 JRNL REVDAT 1 28-MAY-14 4OD7 0 JRNL AUTH F.KURTH,W.DUPREZ,L.PREMKUMAR,M.A.SCHEMBRI,D.P.FAIRLIE, JRNL AUTH 2 J.L.MARTIN JRNL TITL CRYSTAL STRUCTURE OF THE DITHIOL OXIDASE DSBA ENZYME FROM JRNL TITL 2 PROTEUS MIRABILIS BOUND NON-COVALENTLY TO AN ACTIVE SITE JRNL TITL 3 PEPTIDE LIGAND. JRNL REF J.BIOL.CHEM. V. 289 19810 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24831013 JRNL DOI 10.1074/JBC.M114.552380 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 74969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4636 - 4.3295 0.95 3592 193 0.1219 0.1508 REMARK 3 2 4.3295 - 3.4399 0.95 3580 199 0.1218 0.1486 REMARK 3 3 3.4399 - 3.0061 0.95 3583 194 0.1506 0.1948 REMARK 3 4 3.0061 - 2.7317 0.95 3586 189 0.1667 0.2029 REMARK 3 5 2.7317 - 2.5362 0.95 3621 188 0.1767 0.2073 REMARK 3 6 2.5362 - 2.3868 0.95 3554 182 0.1877 0.2020 REMARK 3 7 2.3868 - 2.2674 0.94 3611 206 0.1929 0.2264 REMARK 3 8 2.2674 - 2.1687 0.94 3535 206 0.2002 0.2233 REMARK 3 9 2.1687 - 2.0853 0.95 3590 176 0.2029 0.2511 REMARK 3 10 2.0853 - 2.0134 0.94 3608 205 0.2127 0.2300 REMARK 3 11 2.0134 - 1.9504 0.94 3516 187 0.2204 0.2388 REMARK 3 12 1.9504 - 1.8947 0.94 3581 192 0.2221 0.2337 REMARK 3 13 1.8947 - 1.8449 0.95 3599 169 0.2278 0.2489 REMARK 3 14 1.8449 - 1.7999 0.94 3560 192 0.2376 0.2573 REMARK 3 15 1.7999 - 1.7590 0.95 3577 154 0.2592 0.2854 REMARK 3 16 1.7590 - 1.7215 0.94 3545 196 0.2557 0.3056 REMARK 3 17 1.7215 - 1.6871 0.94 3547 194 0.2772 0.2847 REMARK 3 18 1.6871 - 1.6553 0.94 3563 170 0.2697 0.2941 REMARK 3 19 1.6553 - 1.6257 0.93 3594 191 0.2777 0.2855 REMARK 3 20 1.6257 - 1.5982 0.85 3221 182 0.3037 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4620 REMARK 3 ANGLE : 1.555 6256 REMARK 3 CHIRALITY : 0.071 696 REMARK 3 PLANARITY : 0.009 814 REMARK 3 DIHEDRAL : 14.482 1666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -34.7841 24.8217 22.4453 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.1119 REMARK 3 T33: 0.1147 T12: 0.0657 REMARK 3 T13: -0.0145 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 0.8290 L22: 1.5344 REMARK 3 L33: 3.7327 L12: 0.1255 REMARK 3 L13: -0.0435 L23: -1.1797 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: -0.0395 S13: 0.1029 REMARK 3 S21: 0.0529 S22: -0.0298 S23: 0.0267 REMARK 3 S31: -0.5942 S32: -0.1875 S33: 0.0514 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 0.3060 37.9563 3.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1319 REMARK 3 T33: 0.1385 T12: -0.0041 REMARK 3 T13: -0.0114 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.1838 L22: 1.3407 REMARK 3 L33: 0.9605 L12: 1.0592 REMARK 3 L13: -0.8289 L23: -0.6469 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: 0.1533 S13: -0.0044 REMARK 3 S21: -0.1213 S22: 0.1093 S23: 0.0889 REMARK 3 S31: 0.0639 S32: -0.0386 S33: -0.0431 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 1.9306 3.6445 13.9395 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.2447 REMARK 3 T33: 0.1185 T12: 0.0035 REMARK 3 T13: 0.0182 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.0243 L22: 1.1303 REMARK 3 L33: 3.7485 L12: 0.3483 REMARK 3 L13: 1.1057 L23: 0.4370 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.1501 S13: 0.0203 REMARK 3 S21: -0.0412 S22: -0.0163 S23: -0.1055 REMARK 3 S31: -0.1095 S32: 0.5884 S33: 0.0369 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' REMARK 3 ORIGIN FOR THE GROUP (A): -37.1989 29.7927 9.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.1055 REMARK 3 T33: 0.1354 T12: 0.0677 REMARK 3 T13: -0.0291 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 9.2741 L22: 7.6135 REMARK 3 L33: 4.1555 L12: 6.4686 REMARK 3 L13: -0.8967 L23: -1.8552 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.3712 S13: 0.4005 REMARK 3 S21: 0.2399 S22: -0.0025 S23: 0.4446 REMARK 3 S31: -0.5237 S32: -0.1467 S33: 0.0346 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' REMARK 3 ORIGIN FOR THE GROUP (A): 7.3139 4.0021 27.3955 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.3061 REMARK 3 T33: 0.1117 T12: 0.0049 REMARK 3 T13: 0.0189 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 4.9572 L22: 3.4231 REMARK 3 L33: 3.5114 L12: 1.7858 REMARK 3 L13: 1.7065 L23: 2.7810 REMARK 3 S TENSOR REMARK 3 S11: 0.1805 S12: 0.0378 S13: -0.0241 REMARK 3 S21: 0.0862 S22: -0.0778 S23: -0.3164 REMARK 3 S31: 0.1011 S32: 0.5931 S33: -0.0580 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): -5.2907 35.6634 17.0281 REMARK 3 T TENSOR REMARK 3 T11: 0.1900 T22: 0.2225 REMARK 3 T33: 0.1725 T12: 0.0100 REMARK 3 T13: 0.0215 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 1.1246 L22: 2.0035 REMARK 3 L33: 1.8731 L12: 2.1325 REMARK 3 L13: -0.7503 L23: -2.5282 REMARK 3 S TENSOR REMARK 3 S11: -0.1049 S12: 0.0970 S13: -0.0262 REMARK 3 S21: -0.6052 S22: 0.2711 S23: -0.2242 REMARK 3 S31: 0.0644 S32: 0.0117 S33: -0.1448 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FOLLOWING TWIN LAW WAS APPLIED IN REMARK 3 THE REFINEMENT: H,-H-K,-L REMARK 4 REMARK 4 4OD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74969 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.597 REMARK 200 RESOLUTION RANGE LOW (A) : 64.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.97300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG3350, 0.2 M KSCN, 0.2 M NDSB REMARK 280 -221, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.18000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.09000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 LYS A 188 REMARK 465 SER B -1 REMARK 465 ASN B 0 REMARK 465 LYS B 188 REMARK 465 SER C -1 REMARK 465 ASN C 0 REMARK 465 LYS C 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CB CG CD OE1 OE2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 GLN A 183 CG CD OE1 NE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 100 OD1 ASN C 113 1.47 REMARK 500 O HOH A 446 O HOH A 452 2.12 REMARK 500 O HOH C 415 O HOH C 425 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 105 O HOH C 404 1665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ACE D 65 C PRO D 66 N 0.177 REMARK 500 ACE F 65 C PRO F 66 N 0.121 REMARK 500 SER F 72 C NH2 F 73 N 0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -75.97 -97.04 REMARK 500 VAL A 39 -60.54 -95.85 REMARK 500 LYS A 157 -31.81 -132.73 REMARK 500 LYS B 7 -76.83 -98.42 REMARK 500 VAL B 39 -61.51 -97.72 REMARK 500 LYS B 157 -35.11 -132.39 REMARK 500 MET B 186 1.38 -68.53 REMARK 500 LYS C 7 -77.02 -98.73 REMARK 500 VAL C 39 -61.05 -96.87 REMARK 500 LYS C 157 -31.17 -133.59 REMARK 500 MET C 186 1.78 -69.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OCE RELATED DB: PDB REMARK 900 WILD TYPE PROTEUS MIRABLIS DSBA REMARK 900 RELATED ID: 4OCF RELATED DB: PDB REMARK 900 PROTEUS MIRABLIS DSBA (CYS30SER) DBREF 4OD7 A 2 188 UNP B4EZ68 B4EZ68_PROMH 21 207 DBREF 4OD7 B 2 188 UNP B4EZ68 B4EZ68_PROMH 21 207 DBREF 4OD7 C 2 188 UNP B4EZ68 B4EZ68_PROMH 21 207 DBREF 4OD7 D 65 73 PDB 4OD7 4OD7 65 73 DBREF 4OD7 E 65 73 PDB 4OD7 4OD7 65 73 DBREF 4OD7 F 65 73 PDB 4OD7 4OD7 65 73 SEQADV 4OD7 SER A -1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ASN A 0 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ALA A 1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 SER A 30 UNP B4EZ68 CYS 49 ENGINEERED MUTATION SEQADV 4OD7 SER B -1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ASN B 0 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ALA B 1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 SER B 30 UNP B4EZ68 CYS 49 ENGINEERED MUTATION SEQADV 4OD7 SER C -1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ASN C 0 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 ALA C 1 UNP B4EZ68 EXPRESSION TAG SEQADV 4OD7 SER C 30 UNP B4EZ68 CYS 49 ENGINEERED MUTATION SEQRES 1 A 190 SER ASN ALA ASP ILE SER GLU GLY LYS GLN TYR THR ASN SEQRES 2 A 190 LEU SER LYS PRO VAL ALA GLY ALA PRO GLN VAL VAL GLU SEQRES 3 A 190 PHE PHE SER PHE TYR SER PRO HIS CYS TYR GLN PHE SER SEQRES 4 A 190 GLU VAL TYR LYS VAL ASN SER THR VAL GLU LYS ASN VAL SEQRES 5 A 190 PRO GLU ASN THR LYS MET ALA ARG TYR HIS VAL ASP PHE SEQRES 6 A 190 LEU GLY PRO LEU GLY LYS GLU MET THR ARG ALA TRP ALA SEQRES 7 A 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP GLN VAL SER PRO SEQRES 8 A 190 ALA LEU PHE LYS GLY ILE GLN GLU THR GLN SER ILE ARG SEQRES 9 A 190 SER VAL ASP ASP ILE ARG THR THR PHE ILE ASN ALA GLY SEQRES 10 A 190 VAL LYS ALA GLU ASP TYR ASP ALA ALA ILE ASN SER PHE SEQRES 11 A 190 VAL VAL ASN SER LEU VAL SER GLN GLN GLN ASN ALA VAL SEQRES 12 A 190 THR ASP PHE GLN ILE ASN GLY VAL PRO ALA MET VAL ILE SEQRES 13 A 190 ASP GLY LYS TYR LYS MET LYS ASN ASP GLY ILE SER ALA SEQRES 14 A 190 LYS SER PRO GLU GLU TYR ALA LYS ALA TYR SER ASP VAL SEQRES 15 A 190 VAL ASN GLN LEU LEU MET LYS LYS SEQRES 1 B 190 SER ASN ALA ASP ILE SER GLU GLY LYS GLN TYR THR ASN SEQRES 2 B 190 LEU SER LYS PRO VAL ALA GLY ALA PRO GLN VAL VAL GLU SEQRES 3 B 190 PHE PHE SER PHE TYR SER PRO HIS CYS TYR GLN PHE SER SEQRES 4 B 190 GLU VAL TYR LYS VAL ASN SER THR VAL GLU LYS ASN VAL SEQRES 5 B 190 PRO GLU ASN THR LYS MET ALA ARG TYR HIS VAL ASP PHE SEQRES 6 B 190 LEU GLY PRO LEU GLY LYS GLU MET THR ARG ALA TRP ALA SEQRES 7 B 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP GLN VAL SER PRO SEQRES 8 B 190 ALA LEU PHE LYS GLY ILE GLN GLU THR GLN SER ILE ARG SEQRES 9 B 190 SER VAL ASP ASP ILE ARG THR THR PHE ILE ASN ALA GLY SEQRES 10 B 190 VAL LYS ALA GLU ASP TYR ASP ALA ALA ILE ASN SER PHE SEQRES 11 B 190 VAL VAL ASN SER LEU VAL SER GLN GLN GLN ASN ALA VAL SEQRES 12 B 190 THR ASP PHE GLN ILE ASN GLY VAL PRO ALA MET VAL ILE SEQRES 13 B 190 ASP GLY LYS TYR LYS MET LYS ASN ASP GLY ILE SER ALA SEQRES 14 B 190 LYS SER PRO GLU GLU TYR ALA LYS ALA TYR SER ASP VAL SEQRES 15 B 190 VAL ASN GLN LEU LEU MET LYS LYS SEQRES 1 C 190 SER ASN ALA ASP ILE SER GLU GLY LYS GLN TYR THR ASN SEQRES 2 C 190 LEU SER LYS PRO VAL ALA GLY ALA PRO GLN VAL VAL GLU SEQRES 3 C 190 PHE PHE SER PHE TYR SER PRO HIS CYS TYR GLN PHE SER SEQRES 4 C 190 GLU VAL TYR LYS VAL ASN SER THR VAL GLU LYS ASN VAL SEQRES 5 C 190 PRO GLU ASN THR LYS MET ALA ARG TYR HIS VAL ASP PHE SEQRES 6 C 190 LEU GLY PRO LEU GLY LYS GLU MET THR ARG ALA TRP ALA SEQRES 7 C 190 VAL ALA ILE ALA LEU GLY VAL GLU ASP GLN VAL SER PRO SEQRES 8 C 190 ALA LEU PHE LYS GLY ILE GLN GLU THR GLN SER ILE ARG SEQRES 9 C 190 SER VAL ASP ASP ILE ARG THR THR PHE ILE ASN ALA GLY SEQRES 10 C 190 VAL LYS ALA GLU ASP TYR ASP ALA ALA ILE ASN SER PHE SEQRES 11 C 190 VAL VAL ASN SER LEU VAL SER GLN GLN GLN ASN ALA VAL SEQRES 12 C 190 THR ASP PHE GLN ILE ASN GLY VAL PRO ALA MET VAL ILE SEQRES 13 C 190 ASP GLY LYS TYR LYS MET LYS ASN ASP GLY ILE SER ALA SEQRES 14 C 190 LYS SER PRO GLU GLU TYR ALA LYS ALA TYR SER ASP VAL SEQRES 15 C 190 VAL ASN GLN LEU LEU MET LYS LYS SEQRES 1 D 9 ACE PRO TRP ALA THR CYS ASP SER NH2 SEQRES 1 E 9 ACE PRO TRP ALA THR CYS ASP SER NH2 SEQRES 1 F 9 ACE PRO TRP ALA THR CYS ASP SER NH2 HET ACE D 65 6 HET NH2 D 73 3 HET ACE E 65 6 HET NH2 E 73 3 HET ACE F 65 6 HET NH2 F 73 3 HET SCN A 201 3 HET SCN A 202 3 HET SCN C 201 3 HET SCN C 202 3 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM SCN THIOCYANATE ION FORMUL 4 ACE 3(C2 H4 O) FORMUL 4 NH2 3(H2 N) FORMUL 7 SCN 4(C N S 1-) FORMUL 11 HOH *542(H2 O) HELIX 1 1 SER A 30 GLU A 38 1 9 HELIX 2 2 LYS A 41 VAL A 50 1 10 HELIX 3 3 LEU A 67 GLY A 82 1 16 HELIX 4 4 VAL A 83 GLU A 97 1 15 HELIX 5 5 SER A 103 ALA A 114 1 12 HELIX 6 6 LYS A 117 ILE A 125 1 9 HELIX 7 7 SER A 127 PHE A 144 1 18 HELIX 8 8 SER A 169 MET A 186 1 18 HELIX 9 9 SER B 30 GLU B 38 1 9 HELIX 10 10 LYS B 41 VAL B 50 1 10 HELIX 11 11 LEU B 67 GLY B 82 1 16 HELIX 12 12 VAL B 83 GLU B 97 1 15 HELIX 13 13 SER B 103 ALA B 114 1 12 HELIX 14 14 LYS B 117 ILE B 125 1 9 HELIX 15 15 SER B 127 PHE B 144 1 18 HELIX 16 16 SER B 169 MET B 186 1 18 HELIX 17 17 SER C 30 GLU C 38 1 9 HELIX 18 18 LYS C 41 VAL C 50 1 10 HELIX 19 19 LEU C 67 GLY C 82 1 16 HELIX 20 20 VAL C 83 GLU C 97 1 15 HELIX 21 21 SER C 103 ALA C 114 1 12 HELIX 22 22 LYS C 117 ASN C 126 1 10 HELIX 23 23 SER C 127 PHE C 144 1 18 HELIX 24 24 ASN C 162 ILE C 165 5 4 HELIX 25 25 SER C 169 MET C 186 1 18 SHEET 1 A 5 TYR A 9 ASN A 11 0 SHEET 2 A 5 TYR A 158 MET A 160 -1 O LYS A 159 N THR A 10 SHEET 3 A 5 ALA A 151 ILE A 154 -1 N ILE A 154 O TYR A 158 SHEET 4 A 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 151 SHEET 5 A 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SHEET 1 B 5 TYR B 9 ASN B 11 0 SHEET 2 B 5 TYR B 158 MET B 160 -1 O LYS B 159 N THR B 10 SHEET 3 B 5 ALA B 151 ILE B 154 -1 N ILE B 154 O TYR B 158 SHEET 4 B 5 VAL B 22 PHE B 26 -1 N VAL B 23 O VAL B 153 SHEET 5 B 5 MET B 56 HIS B 60 1 O TYR B 59 N GLU B 24 SHEET 1 C 5 TYR C 9 ASN C 11 0 SHEET 2 C 5 TYR C 158 MET C 160 -1 O LYS C 159 N THR C 10 SHEET 3 C 5 ALA C 151 ILE C 154 -1 N ILE C 154 O TYR C 158 SHEET 4 C 5 VAL C 22 PHE C 26 -1 N VAL C 23 O VAL C 153 SHEET 5 C 5 MET C 56 HIS C 60 1 O TYR C 59 N GLU C 24 LINK C ACE D 65 N PRO D 66 1555 1555 1.52 LINK C SER D 72 N NH2 D 73 1555 1555 1.43 LINK C ACE E 65 N PRO E 66 1555 1555 1.37 LINK C SER E 72 N NH2 E 73 1555 1555 1.38 LINK C ACE F 65 N PRO F 66 1555 1555 1.46 LINK C SER F 72 N NH2 F 73 1555 1555 1.53 CISPEP 1 VAL A 149 PRO A 150 0 1.84 CISPEP 2 VAL B 149 PRO B 150 0 1.24 CISPEP 3 VAL C 149 PRO C 150 0 1.39 SITE 1 AC1 3 PHE A 36 ARG A 58 ALA A 151 SITE 1 AC2 4 HIS A 32 PHE A 36 TYR A 40 PRO D 66 SITE 1 AC3 3 HIS C 32 TYR C 40 PRO E 66 SITE 1 AC4 4 ARG C 58 ALA C 151 MET C 152 HOH C 303 CRYST1 74.056 74.056 93.270 90.00 90.00 120.00 P 32 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013503 0.007796 0.000000 0.00000 SCALE2 0.000000 0.015592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010722 0.00000