HEADER TRANSFERASE 10-JAN-14 4ODJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE S-ADENOSYLMETHIONINE SYNTHETASE FROM TITLE 2 CRYPTOSPORIDIUM HOMINIS IN COMPLEX WITH S-ADENOSYL-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM HOMINIS; SOURCE 3 ORGANISM_TAXID: 237895; SOURCE 4 GENE: CHRO.70301; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CRHOA.00729.A.B1 KEYWDS SSGCID, CRYPTOSPORIDIUM HOMINIS, S-ADENOSYLMETHIONINE SYNTHASE, S- KEYWDS 2 ADENOSYL-L-METHIONINE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID), AUTHOR 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 20-SEP-23 4ODJ 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4ODJ 1 AUTHOR REVDAT 2 22-NOV-17 4ODJ 1 REMARK REVDAT 1 05-MAR-14 4ODJ 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,T.ARAKAKI,D.LORIMER,T.E.EDEWARS JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE S-ADENOSYLMETHIONINE JRNL TITL 2 SYNTHETASE FROM CRYPTOSPORIDIUM HOMINIS IN COMPLEX WITH JRNL TITL 3 S-ADENOSYL-METHIONINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 56815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2803 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3992 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.816 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3158 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3028 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4316 ; 1.645 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6997 ; 0.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;34.576 ;24.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;12.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.476 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 501 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3604 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 701 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1590 ; 0.845 ; 1.085 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1590 ; 0.845 ; 1.085 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1995 ; 1.392 ; 1.625 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 87.9880 50.8820 2.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.0798 T22: 0.0335 REMARK 3 T33: 0.0570 T12: -0.0282 REMARK 3 T13: 0.0024 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.3562 L22: 0.4600 REMARK 3 L33: 0.2662 L12: 0.4733 REMARK 3 L13: -0.1952 L23: -0.0548 REMARK 3 S TENSOR REMARK 3 S11: 0.1800 S12: -0.1297 S13: 0.0130 REMARK 3 S21: 0.1776 S22: -0.0982 S23: -0.0003 REMARK 3 S31: -0.0608 S32: -0.0118 S33: -0.0818 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ODJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 3SO4 MODIFIED WITH CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYTICS MCSG1 SCREEN, G11: 100MM REMARK 280 NA2HPO4/CITRIC ACID PH 4.2, 40% PEG 300; REMARK 280 CRHOA.00729.A.B1.PW37315 AT 28.4MG/ML + 2.5MM S-ADENOSYL- REMARK 280 METHIONINE; TRAY 247830, PUCK QJI2-2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.01333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.01333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 176.79000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 102.06975 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -18.01333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 608 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 GLY A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 THR A 12 REMARK 465 TYR A 13 REMARK 465 THR A 14 REMARK 465 ASP A 15 REMARK 465 LEU A 16 REMARK 465 GLN A 17 REMARK 465 THR A 18 REMARK 465 THR A 19 REMARK 465 SER A 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ARG A 86 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 HIS A 200 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ASP A 348 CG OD1 OD2 REMARK 470 LYS A 354 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLN A 406 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 841 O HOH A 842 1.79 REMARK 500 O1A 3PO A 501 O HOH A 842 1.85 REMARK 500 O3A 3PO A 501 O HOH A 842 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 187 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 67 119.29 -39.42 REMARK 500 LEU A 104 142.03 -175.86 REMARK 500 VAL A 234 -68.84 -120.50 REMARK 500 THR A 278 -97.97 -117.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD2 REMARK 620 2 3PO A 501 O2A 92.1 REMARK 620 3 3PO A 501 O3G 86.8 93.3 REMARK 620 4 3PO A 501 O2B 175.6 92.0 91.4 REMARK 620 5 HOH A 745 O 86.1 178.3 86.7 89.7 REMARK 620 6 HOH A 839 O 89.5 96.5 169.6 91.6 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 3PO A 501 O1G REMARK 620 2 3PO A 501 O1A 87.1 REMARK 620 3 HOH A 741 O 89.7 174.4 REMARK 620 4 HOH A 742 O 97.4 89.4 86.4 REMARK 620 5 HOH A 840 O 170.1 93.8 90.1 92.5 REMARK 620 6 HOH A 841 O 80.5 103.7 80.3 166.5 89.7 REMARK 620 7 HOH A 842 O 79.1 55.3 128.5 144.6 93.3 48.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-CRHOA.00729.A RELATED DB: TARGETTRACK DBREF 4ODJ A 1 406 UNP Q5CKX0 Q5CKX0_CRYHO 1 406 SEQADV 4ODJ MET A -7 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ ALA A -6 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A -5 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A -4 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A -3 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A -2 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A -1 UNP Q5CKX0 EXPRESSION TAG SEQADV 4ODJ HIS A 0 UNP Q5CKX0 EXPRESSION TAG SEQRES 1 A 414 MET ALA HIS HIS HIS HIS HIS HIS MET ASP SER SER ARG SEQRES 2 A 414 LEU SER GLY ASN LYS SER THR TYR THR ASP LEU GLN THR SEQRES 3 A 414 THR SER GLU GLN PHE LEU PHE SER SER GLU SER VAL CYS SEQRES 4 A 414 SER GLY HIS PRO ASP LYS LEU CYS ASP GLN ILE SER ASP SEQRES 5 A 414 ALA ILE LEU ASP ALA CYS LEU GLU GLN ASP PRO GLU SER SEQRES 6 A 414 PHE VAL ALA CYS GLU THR CYS THR LYS THR GLY PHE ILE SEQRES 7 A 414 MET VAL PHE GLY GLU ILE THR THR LYS ALA ASN VAL ASN SEQRES 8 A 414 TYR GLU ARG VAL VAL ARG GLU THR VAL LYS GLU ILE GLY SEQRES 9 A 414 TYR ASP SER GLU GLU LYS GLY LEU ASP TYR LYS THR MET SEQRES 10 A 414 ASP VAL ILE ILE LYS LEU GLU GLN GLN SER ASN GLN ILE SEQRES 11 A 414 ALA GLY CYS VAL HIS VAL ASP LYS ASN VAL GLU ASP ILE SEQRES 12 A 414 GLY ALA GLY ASP GLN GLY MET MET PHE GLY TYR ALA THR SEQRES 13 A 414 ASN GLU THR LYS GLU LEU MET PRO LEU THR HIS VAL LEU SEQRES 14 A 414 ALA THR SER ILE THR ARG GLU LEU ASP TYR ILE ARG MET SEQRES 15 A 414 LYS GLY VAL SER SER ARG VAL GLY TRP LEU ARG PRO ASP SEQRES 16 A 414 GLY LYS ALA GLN VAL THR VAL GLU TYR ASN CYS LYS HIS SEQRES 17 A 414 GLY VAL LEU ILE PRO LYS ARG ILE HIS THR ILE LEU VAL SEQRES 18 A 414 SER VAL GLN HIS ASP GLU ASN ILE GLU ASN GLU GLU ILE SEQRES 19 A 414 ARG GLU PHE VAL LEU GLU ASN VAL ILE LYS LYS VAL CYS SEQRES 20 A 414 PRO SER ASP LEU MET ASP LYS GLU THR ARG ILE LEU ILE SEQRES 21 A 414 ASN PRO SER GLY ARG PHE THR ILE GLY GLY PRO ALA ALA SEQRES 22 A 414 ASP ALA GLY LEU THR GLY ARG LYS ILE ILE VAL ASP THR SEQRES 23 A 414 TYR GLY GLY TRP GLY ALA HIS GLY GLY GLY ALA PHE SER SEQRES 24 A 414 GLY LYS ASP ALA THR LYS VAL ASP ARG SER GLY ALA TYR SEQRES 25 A 414 MET ALA ARG LEU VAL ALA LYS SER ILE VAL PHE SER GLY SEQRES 26 A 414 LEU CYS SER ARG CYS LEU VAL GLN VAL SER TYR GLY ILE SEQRES 27 A 414 GLY ILE ALA ARG PRO LEU SER LEU TYR ILE ASN THR PHE SEQRES 28 A 414 GLY THR ALA LYS ASP GLY TYR ASN ASP THR LYS LEU LEU SEQRES 29 A 414 GLU ILE VAL ASN LYS VAL PHE ASP PHE ARG PRO GLY ILE SEQRES 30 A 414 LEU ILE LYS GLN LEU ASN LEU LYS SER PRO ILE PHE LYS SEQRES 31 A 414 LYS THR SER SER GLY GLY HIS PHE GLY ARG SER GLU LYS SEQRES 32 A 414 GLU PHE LEU TRP GLU LYS PRO ILE ILE LEU GLN HET SAM A 500 27 HET 3PO A 501 13 HET MG A 502 1 HET MG A 503 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM 3PO TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 3PO H5 O10 P3 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *297(H2 O) HELIX 1 1 HIS A 34 ASP A 54 1 21 HELIX 2 2 ASN A 83 GLY A 96 1 14 HELIX 3 3 GLU A 100 GLY A 103 5 4 HELIX 4 4 SER A 119 HIS A 127 1 9 HELIX 5 5 ASN A 131 ILE A 135 5 5 HELIX 6 6 PRO A 156 LYS A 175 1 20 HELIX 7 7 GLU A 222 VAL A 234 1 13 HELIX 8 8 VAL A 234 CYS A 239 1 6 HELIX 9 9 PRO A 240 MET A 244 5 5 HELIX 10 10 GLY A 261 ALA A 265 5 5 HELIX 11 11 LYS A 297 SER A 316 1 20 HELIX 12 12 ASN A 351 PHE A 363 1 13 HELIX 13 13 ARG A 366 LEU A 374 1 9 HELIX 14 14 PHE A 381 SER A 386 5 6 HELIX 15 15 PHE A 397 LYS A 401 5 5 SHEET 1 A 4 GLN A 22 VAL A 30 0 SHEET 2 A 4 LEU A 184 LYS A 199 -1 O TYR A 196 N PHE A 23 SHEET 3 A 4 VAL A 202 HIS A 217 -1 O LYS A 206 N GLU A 195 SHEET 4 A 4 ARG A 249 ILE A 252 1 O LEU A 251 N ILE A 211 SHEET 1 B 4 ASP A 110 GLU A 116 0 SHEET 2 B 4 PHE A 69 THR A 77 1 N VAL A 72 O LYS A 114 SHEET 3 B 4 PHE A 58 LYS A 66 -1 N GLU A 62 O PHE A 73 SHEET 4 B 4 GLY A 268 LEU A 269 -1 O GLY A 268 N THR A 65 SHEET 1 C 2 ASP A 98 SER A 99 0 SHEET 2 C 2 LEU A 104 ASP A 105 -1 O LEU A 104 N SER A 99 SHEET 1 D 3 GLY A 141 THR A 148 0 SHEET 2 D 3 ARG A 321 TYR A 328 -1 O VAL A 324 N GLY A 145 SHEET 3 D 3 SER A 337 ASN A 341 -1 O ASN A 341 N LEU A 323 LINK OD2 ASP A 36 MG MG A 502 1555 1555 2.09 LINK O2A 3PO A 501 MG MG A 502 1555 1555 2.01 LINK O3G 3PO A 501 MG MG A 502 1555 1555 2.04 LINK O2B 3PO A 501 MG MG A 502 1555 1555 2.09 LINK O1G 3PO A 501 MG MG A 503 1555 1555 2.04 LINK O1A 3PO A 501 MG MG A 503 1555 1555 2.18 LINK MG MG A 502 O HOH A 745 1555 1555 2.22 LINK MG MG A 502 O HOH A 839 1555 1555 2.12 LINK MG MG A 503 O HOH A 741 1555 1555 2.40 LINK MG MG A 503 O HOH A 742 1555 1555 2.15 LINK MG MG A 503 O HOH A 840 1555 1555 1.79 LINK MG MG A 503 O HOH A 841 1555 1555 2.39 LINK MG MG A 503 O HOH A 842 1555 1555 1.70 SITE 1 AC1 23 HIS A 34 PRO A 35 ALA A 60 GLU A 75 SITE 2 AC1 23 GLN A 118 GLN A 121 ILE A 122 GLY A 138 SITE 3 AC1 23 ASP A 139 ASP A 187 LYS A 189 SER A 255 SITE 4 AC1 23 ARG A 257 PHE A 258 ASP A 266 LYS A 297 SITE 5 AC1 23 3PO A 501 HOH A 609 HOH A 611 HOH A 639 SITE 6 AC1 23 HOH A 653 HOH A 656 HOH A 704 SITE 1 AC2 23 HIS A 34 ASP A 36 ASP A 139 LYS A 189 SITE 2 AC2 23 ARG A 272 LYS A 273 GLY A 288 ALA A 289 SITE 3 AC2 23 LYS A 293 ASP A 299 SAM A 500 MG A 502 SITE 4 AC2 23 MG A 503 HOH A 679 HOH A 703 HOH A 704 SITE 5 AC2 23 HOH A 742 HOH A 745 HOH A 746 HOH A 839 SITE 6 AC2 23 HOH A 840 HOH A 841 HOH A 842 SITE 1 AC3 5 ASP A 36 LYS A 273 3PO A 501 HOH A 745 SITE 2 AC3 5 HOH A 839 SITE 1 AC4 7 ASP A 299 3PO A 501 HOH A 741 HOH A 742 SITE 2 AC4 7 HOH A 840 HOH A 841 HOH A 842 CRYST1 117.860 117.860 54.040 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008485 0.004899 0.000000 0.00000 SCALE2 0.000000 0.009797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018505 0.00000