data_4ODK # _entry.id 4ODK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ODK RCSB RCSB084357 WWPDB D_1000084357 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ODL . unspecified PDB 4ODM . unspecified PDB 4ODN . unspecified PDB 4ODO . unspecified PDB 4ODP . unspecified PDB 4ODQ . unspecified PDB 4ODR . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ODK _pdbx_database_status.recvd_initial_deposition_date 2014-01-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Quistgaard, E.M.' 1 'Low, C.' 2 'Nordlund, P.' 3 # _citation.id primary _citation.title 'Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.' _citation.journal_abbrev 'BMC Biol.' _citation.journal_volume 14 _citation.page_first 82 _citation.page_last 82 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1741-7007 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27664121 _citation.pdbx_database_id_DOI 10.1186/s12915-016-0300-3 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Quistgaard, E.M.' 1 primary 'Weininger, U.' 2 primary 'Ural-Blimke, Y.' 3 primary 'Modig, K.' 4 primary 'Nordlund, P.' 5 primary 'Akke, M.' 6 primary 'Low, C.' 7 # _cell.entry_id 4ODK _cell.length_a 87.500 _cell.length_b 52.990 _cell.length_c 48.910 _cell.angle_alpha 90.00 _cell.angle_beta 111.18 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ODK _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase SlyD' 17400.234 1 5.2.1.8 ? ? ? 2 polymer syn 'Guanyl-specific ribonuclease T1' 1728.798 2 ? ? 'T1 peptide (UNP residues 59-73)' ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 195 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TtSlyD 2 'RNase T1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFP EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHHHH ; ;MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFP EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHHHH ; A ? 2 'polypeptide(L)' no yes 'VGSNSYPHKYNNYEG(NH2)' VGSNSYPHKYNNYEGX B,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 VAL n 1 4 GLY n 1 5 GLN n 1 6 ASP n 1 7 LYS n 1 8 VAL n 1 9 VAL n 1 10 THR n 1 11 ILE n 1 12 ARG n 1 13 TYR n 1 14 THR n 1 15 LEU n 1 16 GLN n 1 17 VAL n 1 18 GLU n 1 19 GLY n 1 20 GLU n 1 21 VAL n 1 22 LEU n 1 23 ASP n 1 24 GLN n 1 25 GLY n 1 26 GLU n 1 27 LEU n 1 28 SER n 1 29 TYR n 1 30 LEU n 1 31 HIS n 1 32 GLY n 1 33 HIS n 1 34 ARG n 1 35 ASN n 1 36 LEU n 1 37 ILE n 1 38 PRO n 1 39 GLY n 1 40 LEU n 1 41 GLU n 1 42 GLU n 1 43 ALA n 1 44 LEU n 1 45 GLU n 1 46 GLY n 1 47 ARG n 1 48 GLU n 1 49 GLU n 1 50 GLY n 1 51 GLU n 1 52 ALA n 1 53 PHE n 1 54 GLN n 1 55 ALA n 1 56 HIS n 1 57 VAL n 1 58 PRO n 1 59 ALA n 1 60 GLU n 1 61 LYS n 1 62 ALA n 1 63 TYR n 1 64 GLY n 1 65 PRO n 1 66 HIS n 1 67 ASP n 1 68 PRO n 1 69 GLU n 1 70 GLY n 1 71 VAL n 1 72 GLN n 1 73 VAL n 1 74 VAL n 1 75 PRO n 1 76 LEU n 1 77 SER n 1 78 ALA n 1 79 PHE n 1 80 PRO n 1 81 GLU n 1 82 ASP n 1 83 ALA n 1 84 GLU n 1 85 VAL n 1 86 VAL n 1 87 PRO n 1 88 GLY n 1 89 ALA n 1 90 GLN n 1 91 PHE n 1 92 TYR n 1 93 ALA n 1 94 GLN n 1 95 ASP n 1 96 MET n 1 97 GLU n 1 98 GLY n 1 99 ASN n 1 100 PRO n 1 101 MET n 1 102 PRO n 1 103 LEU n 1 104 THR n 1 105 VAL n 1 106 VAL n 1 107 ALA n 1 108 VAL n 1 109 GLU n 1 110 GLY n 1 111 GLU n 1 112 GLU n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 ASP n 1 117 PHE n 1 118 ASN n 1 119 HIS n 1 120 PRO n 1 121 LEU n 1 122 ALA n 1 123 GLY n 1 124 LYS n 1 125 ASP n 1 126 LEU n 1 127 ASP n 1 128 PHE n 1 129 GLN n 1 130 VAL n 1 131 GLU n 1 132 VAL n 1 133 VAL n 1 134 LYS n 1 135 VAL n 1 136 ARG n 1 137 GLU n 1 138 ALA n 1 139 THR n 1 140 PRO n 1 141 GLU n 1 142 GLU n 1 143 LEU n 1 144 LEU n 1 145 HIS n 1 146 GLY n 1 147 HIS n 1 148 ALA n 1 149 HIS n 1 150 PRO n 1 151 SER n 1 152 GLY n 1 153 HIS n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n 2 1 VAL n 2 2 GLY n 2 3 SER n 2 4 ASN n 2 5 SER n 2 6 TYR n 2 7 PRO n 2 8 HIS n 2 9 LYS n 2 10 TYR n 2 11 ASN n 2 12 ASN n 2 13 TYR n 2 14 GLU n 2 15 GLY n 2 16 NH2 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TTHA0346 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Aspergillus oryzae' _pdbx_entity_src_syn.organism_common_name 'Yellow koji mold' _pdbx_entity_src_syn.ncbi_taxonomy_id 5062 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q5SLE7_THET8 Q5SLE7 1 ;MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFP EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEVVKVREATPEELLHGHAH ; 1 ? 2 UNP RNT1_ASPOR P00651 2 VGSNSYPHKYNNYEG 59 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ODK A 1 ? 149 ? Q5SLE7 1 ? 149 ? 1 149 2 2 4ODK B 1 ? 15 ? P00651 59 ? 73 ? 59 73 3 2 4ODK C 1 ? 15 ? P00651 59 ? 73 ? 59 73 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ODK PRO A 150 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 150 1 1 4ODK SER A 151 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 151 2 1 4ODK GLY A 152 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 152 3 1 4ODK HIS A 153 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 153 4 1 4ODK HIS A 154 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 154 5 1 4ODK HIS A 155 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 155 6 1 4ODK HIS A 156 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 156 7 1 4ODK HIS A 157 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 157 8 1 4ODK HIS A 158 ? UNP Q5SLE7 ? ? 'EXPRESSION TAG' 158 9 2 4ODK NH2 B 16 ? UNP P00651 ? ? AMIDATION 74 10 3 4ODK NH2 C 16 ? UNP P00651 ? ? AMIDATION 74 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ODK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '13.2% PEG1500, 0.1 M HEPES, pH 7.5, 0.05 M sodium chloride, 11% glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-02-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9191 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9191 # _reflns.entry_id 4ODK _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 29.1 _reflns.d_resolution_high 1.4 _reflns.number_obs 40188 _reflns.number_all 40188 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.023 _reflns.pdbx_netI_over_sigmaI 23.03 _reflns.B_iso_Wilson_estimate 23.11 _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.44 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.714 _reflns_shell.meanI_over_sigI_obs 2.02 _reflns_shell.pdbx_redundancy 3.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2832 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4ODK _refine.ls_number_reflns_obs 40188 _refine.ls_number_reflns_all 40188 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.096 _refine.ls_d_res_high 1.401 _refine.ls_percent_reflns_obs 97.79 _refine.ls_R_factor_obs 0.1403 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1393 _refine.ls_R_factor_R_free 0.1671 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.12 _refine.ls_number_reflns_R_free 1255 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'PDB ENTRY 3LUO' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.13 _refine.pdbx_overall_phase_error 19.03 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1288 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 195 _refine_hist.number_atoms_total 1484 _refine_hist.d_res_high 1.401 _refine_hist.d_res_low 29.096 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.005 ? ? 1376 ? 'X-RAY DIFFRACTION' f_angle_d 1.027 ? ? 1888 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 12.692 ? ? 517 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.071 ? ? 202 ? 'X-RAY DIFFRACTION' f_plane_restr 0.006 ? ? 258 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.401 1.4566 4165 0.2206 95.0 0.2833 . . 124 . . . . 'X-RAY DIFFRACTION' . 1.4566 1.5229 4305 0.1585 97.0 0.2030 . . 114 . . . . 'X-RAY DIFFRACTION' . 1.5229 1.6032 4350 0.1203 98.0 0.1872 . . 127 . . . . 'X-RAY DIFFRACTION' . 1.6032 1.7036 4324 0.0978 98.0 0.1469 . . 115 . . . . 'X-RAY DIFFRACTION' . 1.7036 1.8351 4315 0.0952 98.0 0.1371 . . 163 . . . . 'X-RAY DIFFRACTION' . 1.8351 2.0198 4331 0.0948 98.0 0.1431 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.0198 2.3119 4365 0.1124 99.0 0.1483 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.3119 2.9124 4386 0.1584 99.0 0.1664 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.9124 29.1019 4392 0.1520 98.0 0.1748 . . 169 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ODK _struct.title 'Structure of SlyD from Thermus thermophilus in complex with T1 peptide' _struct.pdbx_descriptor 'Peptidyl-prolyl cis-trans isomerase (E.C.5.2.1.8), Guanyl-specific ribonuclease T1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ODK _struct_keywords.pdbx_keywords 'ISOMERASE, CHAPERONE' _struct_keywords.text 'FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase, PPIase, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 37 ? GLU A 45 ? ILE A 37 GLU A 45 1 ? 9 HELX_P HELX_P2 2 PRO A 58 ? ALA A 62 ? PRO A 58 ALA A 62 5 ? 5 HELX_P HELX_P3 3 ASP A 67 ? GLU A 69 ? ASP A 67 GLU A 69 5 ? 3 HELX_P HELX_P4 4 SER A 77 ? PHE A 79 ? SER A 77 PHE A 79 5 ? 3 HELX_P HELX_P5 5 THR A 139 ? GLY A 146 ? THR A 139 GLY A 146 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 15 _struct_conn.ptnr1_label_atom_id C _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id NH2 _struct_conn.ptnr2_label_seq_id 16 _struct_conn.ptnr2_label_atom_id N _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 73 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id NH2 _struct_conn.ptnr2_auth_seq_id 74 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 6 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 64 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 7 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 65 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.33 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 52 ? VAL A 57 ? ALA A 52 VAL A 57 A 2 LEU A 126 ? GLU A 137 ? LEU A 126 GLU A 137 A 3 LYS A 7 ? VAL A 17 ? LYS A 7 VAL A 17 A 4 GLU A 20 ? LEU A 30 ? GLU A 20 LEU A 30 A 5 HIS A 154 ? HIS A 156 ? HIS A 154 HIS A 156 B 1 VAL A 71 ? PRO A 75 ? VAL A 71 PRO A 75 B 2 GLU A 112 ? ASP A 116 ? GLU A 112 ASP A 116 B 3 MET A 101 ? GLU A 109 ? MET A 101 GLU A 109 B 4 GLN A 90 ? ALA A 93 ? GLN A 90 ALA A 93 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 57 ? N VAL A 57 O LEU A 126 ? O LEU A 126 A 2 3 O ARG A 136 ? O ARG A 136 N VAL A 8 ? N VAL A 8 A 3 4 N LEU A 15 ? N LEU A 15 O ASP A 23 ? O ASP A 23 A 4 5 N GLN A 24 ? N GLN A 24 O HIS A 156 ? O HIS A 156 B 1 2 N GLN A 72 ? N GLN A 72 O VAL A 115 ? O VAL A 115 B 2 3 O GLU A 112 ? O GLU A 112 N GLU A 109 ? N GLU A 109 B 3 4 O MET A 101 ? O MET A 101 N ALA A 93 ? N ALA A 93 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 TYR A 29 ? TYR A 29 . ? 1_555 ? 2 AC1 6 LEU A 30 ? LEU A 30 . ? 1_555 ? 3 AC1 6 ASN A 35 ? ASN A 35 . ? 1_555 ? 4 AC1 6 HIS A 147 ? HIS A 147 . ? 1_555 ? 5 AC1 6 ALA A 148 ? ALA A 148 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH C 101 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ODK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ODK _atom_sites.fract_transf_matrix[1][1] 0.011429 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004427 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018871 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021926 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 HIS 33 33 33 HIS HIS A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 PRO 80 80 80 PRO PRO A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 MET 96 96 ? ? ? A . n A 1 97 GLU 97 97 ? ? ? A . n A 1 98 GLY 98 98 ? ? ? A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 MET 101 101 101 MET MET A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 GLN 129 129 129 GLN GLN A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ARG 136 136 136 ARG ARG A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 HIS 149 149 149 HIS HIS A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 HIS 153 153 153 HIS HIS A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 HIS 156 156 156 HIS HIS A . n A 1 157 HIS 157 157 ? ? ? A . n A 1 158 HIS 158 158 ? ? ? A . n B 2 1 VAL 1 59 ? ? ? B . n B 2 2 GLY 2 60 ? ? ? B . n B 2 3 SER 3 61 ? ? ? B . n B 2 4 ASN 4 62 ? ? ? B . n B 2 5 SER 5 63 ? ? ? B . n B 2 6 TYR 6 64 ? ? ? B . n B 2 7 PRO 7 65 ? ? ? B . n B 2 8 HIS 8 66 66 HIS HIS B . n B 2 9 LYS 9 67 67 LYS LYS B . n B 2 10 TYR 10 68 68 TYR TYR B . n B 2 11 ASN 11 69 69 ASN ASN B . n B 2 12 ASN 12 70 70 ASN ASN B . n B 2 13 TYR 13 71 71 TYR TYR B . n B 2 14 GLU 14 72 72 GLU GLU B . n B 2 15 GLY 15 73 73 GLY GLY B . n B 2 16 NH2 16 74 73 NH2 NH2 B . n C 2 1 VAL 1 59 ? ? ? C . n C 2 2 GLY 2 60 ? ? ? C . n C 2 3 SER 3 61 ? ? ? C . n C 2 4 ASN 4 62 ? ? ? C . n C 2 5 SER 5 63 ? ? ? C . n C 2 6 TYR 6 64 64 TYR TYR C . n C 2 7 PRO 7 65 65 PRO PRO C . n C 2 8 HIS 8 66 66 HIS HIS C . n C 2 9 LYS 9 67 ? ? ? C . n C 2 10 TYR 10 68 ? ? ? C . n C 2 11 ASN 11 69 ? ? ? C . n C 2 12 ASN 12 70 ? ? ? C . n C 2 13 TYR 13 71 ? ? ? C . n C 2 14 GLU 14 72 ? ? ? C . n C 2 15 GLY 15 73 ? ? ? C . n C 2 16 NH2 16 74 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CL 1 201 1 CL CL A . E 4 HOH 1 301 2 HOH HOH A . E 4 HOH 2 302 3 HOH HOH A . E 4 HOH 3 303 4 HOH HOH A . E 4 HOH 4 304 6 HOH HOH A . E 4 HOH 5 305 8 HOH HOH A . E 4 HOH 6 306 10 HOH HOH A . E 4 HOH 7 307 11 HOH HOH A . E 4 HOH 8 308 12 HOH HOH A . E 4 HOH 9 309 13 HOH HOH A . E 4 HOH 10 310 14 HOH HOH A . E 4 HOH 11 311 15 HOH HOH A . E 4 HOH 12 312 16 HOH HOH A . E 4 HOH 13 313 17 HOH HOH A . E 4 HOH 14 314 18 HOH HOH A . E 4 HOH 15 315 20 HOH HOH A . E 4 HOH 16 316 22 HOH HOH A . E 4 HOH 17 317 23 HOH HOH A . E 4 HOH 18 318 24 HOH HOH A . E 4 HOH 19 319 25 HOH HOH A . E 4 HOH 20 320 26 HOH HOH A . E 4 HOH 21 321 27 HOH HOH A . E 4 HOH 22 322 28 HOH HOH A . E 4 HOH 23 323 29 HOH HOH A . E 4 HOH 24 324 30 HOH HOH A . E 4 HOH 25 325 31 HOH HOH A . E 4 HOH 26 326 32 HOH HOH A . E 4 HOH 27 327 33 HOH HOH A . E 4 HOH 28 328 34 HOH HOH A . E 4 HOH 29 329 35 HOH HOH A . E 4 HOH 30 330 36 HOH HOH A . E 4 HOH 31 331 37 HOH HOH A . E 4 HOH 32 332 38 HOH HOH A . E 4 HOH 33 333 39 HOH HOH A . E 4 HOH 34 334 40 HOH HOH A . E 4 HOH 35 335 42 HOH HOH A . E 4 HOH 36 336 43 HOH HOH A . E 4 HOH 37 337 44 HOH HOH A . E 4 HOH 38 338 45 HOH HOH A . E 4 HOH 39 339 46 HOH HOH A . E 4 HOH 40 340 47 HOH HOH A . E 4 HOH 41 341 48 HOH HOH A . E 4 HOH 42 342 49 HOH HOH A . E 4 HOH 43 343 50 HOH HOH A . E 4 HOH 44 344 51 HOH HOH A . E 4 HOH 45 345 52 HOH HOH A . E 4 HOH 46 346 53 HOH HOH A . E 4 HOH 47 347 54 HOH HOH A . E 4 HOH 48 348 55 HOH HOH A . E 4 HOH 49 349 56 HOH HOH A . E 4 HOH 50 350 57 HOH HOH A . E 4 HOH 51 351 58 HOH HOH A . E 4 HOH 52 352 59 HOH HOH A . E 4 HOH 53 353 60 HOH HOH A . E 4 HOH 54 354 61 HOH HOH A . E 4 HOH 55 355 62 HOH HOH A . E 4 HOH 56 356 63 HOH HOH A . E 4 HOH 57 357 64 HOH HOH A . E 4 HOH 58 358 65 HOH HOH A . E 4 HOH 59 359 66 HOH HOH A . E 4 HOH 60 360 67 HOH HOH A . E 4 HOH 61 361 68 HOH HOH A . E 4 HOH 62 362 69 HOH HOH A . E 4 HOH 63 363 70 HOH HOH A . E 4 HOH 64 364 72 HOH HOH A . E 4 HOH 65 365 73 HOH HOH A . E 4 HOH 66 366 74 HOH HOH A . E 4 HOH 67 367 75 HOH HOH A . E 4 HOH 68 368 77 HOH HOH A . E 4 HOH 69 369 78 HOH HOH A . E 4 HOH 70 370 79 HOH HOH A . E 4 HOH 71 371 81 HOH HOH A . E 4 HOH 72 372 82 HOH HOH A . E 4 HOH 73 373 84 HOH HOH A . E 4 HOH 74 374 85 HOH HOH A . E 4 HOH 75 375 86 HOH HOH A . E 4 HOH 76 376 87 HOH HOH A . E 4 HOH 77 377 88 HOH HOH A . E 4 HOH 78 378 89 HOH HOH A . E 4 HOH 79 379 90 HOH HOH A . E 4 HOH 80 380 91 HOH HOH A . E 4 HOH 81 381 93 HOH HOH A . E 4 HOH 82 382 94 HOH HOH A . E 4 HOH 83 383 95 HOH HOH A . E 4 HOH 84 384 97 HOH HOH A . E 4 HOH 85 385 98 HOH HOH A . E 4 HOH 86 386 99 HOH HOH A . E 4 HOH 87 387 100 HOH HOH A . E 4 HOH 88 388 101 HOH HOH A . E 4 HOH 89 389 102 HOH HOH A . E 4 HOH 90 390 103 HOH HOH A . E 4 HOH 91 391 104 HOH HOH A . E 4 HOH 92 392 105 HOH HOH A . E 4 HOH 93 393 106 HOH HOH A . E 4 HOH 94 394 107 HOH HOH A . E 4 HOH 95 395 108 HOH HOH A . E 4 HOH 96 396 109 HOH HOH A . E 4 HOH 97 397 110 HOH HOH A . E 4 HOH 98 398 111 HOH HOH A . E 4 HOH 99 399 112 HOH HOH A . E 4 HOH 100 400 113 HOH HOH A . E 4 HOH 101 401 114 HOH HOH A . E 4 HOH 102 402 115 HOH HOH A . E 4 HOH 103 403 116 HOH HOH A . E 4 HOH 104 404 117 HOH HOH A . E 4 HOH 105 405 118 HOH HOH A . E 4 HOH 106 406 120 HOH HOH A . E 4 HOH 107 407 121 HOH HOH A . E 4 HOH 108 408 122 HOH HOH A . E 4 HOH 109 409 123 HOH HOH A . E 4 HOH 110 410 125 HOH HOH A . E 4 HOH 111 411 126 HOH HOH A . E 4 HOH 112 412 127 HOH HOH A . E 4 HOH 113 413 128 HOH HOH A . E 4 HOH 114 414 129 HOH HOH A . E 4 HOH 115 415 130 HOH HOH A . E 4 HOH 116 416 131 HOH HOH A . E 4 HOH 117 417 132 HOH HOH A . E 4 HOH 118 418 134 HOH HOH A . E 4 HOH 119 419 135 HOH HOH A . E 4 HOH 120 420 136 HOH HOH A . E 4 HOH 121 421 137 HOH HOH A . E 4 HOH 122 422 138 HOH HOH A . E 4 HOH 123 423 139 HOH HOH A . E 4 HOH 124 424 140 HOH HOH A . E 4 HOH 125 425 141 HOH HOH A . E 4 HOH 126 426 143 HOH HOH A . E 4 HOH 127 427 144 HOH HOH A . E 4 HOH 128 428 145 HOH HOH A . E 4 HOH 129 429 146 HOH HOH A . E 4 HOH 130 430 147 HOH HOH A . E 4 HOH 131 431 148 HOH HOH A . E 4 HOH 132 432 149 HOH HOH A . E 4 HOH 133 433 150 HOH HOH A . E 4 HOH 134 434 151 HOH HOH A . E 4 HOH 135 435 152 HOH HOH A . E 4 HOH 136 436 153 HOH HOH A . E 4 HOH 137 437 154 HOH HOH A . E 4 HOH 138 438 156 HOH HOH A . E 4 HOH 139 439 157 HOH HOH A . E 4 HOH 140 440 158 HOH HOH A . E 4 HOH 141 441 159 HOH HOH A . E 4 HOH 142 442 160 HOH HOH A . E 4 HOH 143 443 161 HOH HOH A . E 4 HOH 144 444 162 HOH HOH A . E 4 HOH 145 445 163 HOH HOH A . E 4 HOH 146 446 164 HOH HOH A . E 4 HOH 147 447 166 HOH HOH A . E 4 HOH 148 448 167 HOH HOH A . E 4 HOH 149 449 168 HOH HOH A . E 4 HOH 150 450 169 HOH HOH A . E 4 HOH 151 451 170 HOH HOH A . E 4 HOH 152 452 171 HOH HOH A . E 4 HOH 153 453 172 HOH HOH A . E 4 HOH 154 454 173 HOH HOH A . E 4 HOH 155 455 174 HOH HOH A . E 4 HOH 156 456 175 HOH HOH A . E 4 HOH 157 457 176 HOH HOH A . E 4 HOH 158 458 177 HOH HOH A . E 4 HOH 159 459 178 HOH HOH A . E 4 HOH 160 460 179 HOH HOH A . E 4 HOH 161 461 180 HOH HOH A . E 4 HOH 162 462 181 HOH HOH A . E 4 HOH 163 463 182 HOH HOH A . E 4 HOH 164 464 184 HOH HOH A . E 4 HOH 165 465 186 HOH HOH A . E 4 HOH 166 466 187 HOH HOH A . E 4 HOH 167 467 188 HOH HOH A . E 4 HOH 168 468 192 HOH HOH A . E 4 HOH 169 469 193 HOH HOH A . E 4 HOH 170 470 194 HOH HOH A . E 4 HOH 171 471 195 HOH HOH A . E 4 HOH 172 472 196 HOH HOH A . E 4 HOH 173 473 197 HOH HOH A . E 4 HOH 174 474 198 HOH HOH A . E 4 HOH 175 475 200 HOH HOH A . E 4 HOH 176 476 201 HOH HOH A . E 4 HOH 177 477 202 HOH HOH A . E 4 HOH 178 478 203 HOH HOH A . E 4 HOH 179 479 204 HOH HOH A . E 4 HOH 180 480 206 HOH HOH A . E 4 HOH 181 481 207 HOH HOH A . F 4 HOH 1 101 5 HOH HOH B . F 4 HOH 2 102 7 HOH HOH B . F 4 HOH 3 103 9 HOH HOH B . F 4 HOH 4 104 19 HOH HOH B . F 4 HOH 5 105 21 HOH HOH B . F 4 HOH 6 106 41 HOH HOH B . F 4 HOH 7 107 71 HOH HOH B . F 4 HOH 8 108 76 HOH HOH B . F 4 HOH 9 109 96 HOH HOH B . F 4 HOH 10 110 119 HOH HOH B . F 4 HOH 11 111 124 HOH HOH B . F 4 HOH 12 112 142 HOH HOH B . F 4 HOH 13 113 165 HOH HOH B . G 4 HOH 1 101 80 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1830 ? 1 MORE -19 ? 1 'SSA (A^2)' 9670 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-01-14 2 'Structure model' 1 1 2017-10-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 XDS 'data reduction' . ? 4 XSCALE 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 313 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 468 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 62 ? ? -116.24 -107.24 2 1 SER A 151 ? ? -140.01 23.53 3 1 PRO C 65 ? ? -99.70 38.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 96 ? A MET 96 2 1 Y 1 A GLU 97 ? A GLU 97 3 1 Y 1 A GLY 98 ? A GLY 98 4 1 Y 1 A HIS 157 ? A HIS 157 5 1 Y 1 A HIS 158 ? A HIS 158 6 1 Y 1 B VAL 59 ? B VAL 1 7 1 Y 1 B GLY 60 ? B GLY 2 8 1 Y 1 B SER 61 ? B SER 3 9 1 Y 1 B ASN 62 ? B ASN 4 10 1 Y 1 B SER 63 ? B SER 5 11 1 Y 1 B TYR 64 ? B TYR 6 12 1 Y 1 B PRO 65 ? B PRO 7 13 1 Y 1 C VAL 59 ? C VAL 1 14 1 Y 1 C GLY 60 ? C GLY 2 15 1 Y 1 C SER 61 ? C SER 3 16 1 Y 1 C ASN 62 ? C ASN 4 17 1 Y 1 C SER 63 ? C SER 5 18 1 Y 1 C LYS 67 ? C LYS 9 19 1 Y 1 C TYR 68 ? C TYR 10 20 1 Y 1 C ASN 69 ? C ASN 11 21 1 Y 1 C ASN 70 ? C ASN 12 22 1 Y 1 C TYR 71 ? C TYR 13 23 1 Y 1 C GLU 72 ? C GLU 14 24 1 Y 1 C GLY 73 ? C GLY 15 25 1 Y 1 C NH2 74 ? C NH2 16 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 water HOH #