HEADER ISOMERASE, CHAPERONE 10-JAN-14 4ODP TITLE STRUCTURE OF SLYD DELTA-IF FROM THERMUS THERMOPHILUS IN COMPLEX WITH TITLE 2 S2-W23A PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD, PEPTIDYL-PROLYL COMPND 3 CIS-TRANS ISOMERASE FKBP1A CHIMERA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SEE REMARK 999; COMPND 6 SYNONYM: TTSLYD, PPIASE FKBP1A, 12 KDA FK506-BINDING PROTEIN, 12 KDA COMPND 7 FKBP, FKBP-12, CALSTABIN-1, FK506-BINDING PROTEIN 1A, FKBP-1A, COMPND 8 IMMUNOPHILIN FKBP12, ROTAMASE; COMPND 9 EC: 5.2.1.8; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: 30S RIBOSOMAL PROTEIN S2; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: S2-W23 PEPTIDE (UNP RESIDUES 20-34); COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: BACTERIA, HUMAN; SOURCE 4 ORGANISM_TAXID: 274, 9606; SOURCE 5 GENE: TTHA0346, FKBP1, FKBP12, FKBP1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333 KEYWDS FKBP DOMAIN, CHAPERONE, PEPTIDYL-PROLYL ISOMERASE, PPIASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.QUISTGAARD,C.LOW,P.NORDLUND REVDAT 4 28-FEB-24 4ODP 1 REMARK SEQADV LINK REVDAT 3 04-OCT-17 4ODP 1 JRNL REVDAT 2 26-JUL-17 4ODP 1 SOURCE REMARK REVDAT 1 14-JAN-15 4ODP 0 JRNL AUTH E.M.QUISTGAARD,U.WEININGER,Y.URAL-BLIMKE,K.MODIG,P.NORDLUND, JRNL AUTH 2 M.AKKE,C.LOW JRNL TITL MOLECULAR INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYTIC JRNL TITL 2 MECHANISM OF THE CHAPERONE AND FKBP PEPTIDYL-PROLYL JRNL TITL 3 ISOMERASE SLYD. JRNL REF BMC BIOL. V. 14 82 2016 JRNL REFN ESSN 1741-7007 JRNL PMID 27664121 JRNL DOI 10.1186/S12915-016-0300-3 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.130 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6316 - 3.1740 1.00 4390 116 0.1724 0.1719 REMARK 3 2 3.1740 - 2.5197 1.00 4341 153 0.2001 0.2273 REMARK 3 3 2.5197 - 2.2013 1.00 4361 132 0.1898 0.2132 REMARK 3 4 2.2013 - 2.0001 1.00 4313 158 0.1799 0.2272 REMARK 3 5 2.0001 - 1.8568 1.00 4354 146 0.1846 0.1871 REMARK 3 6 1.8568 - 1.7470 1.00 4352 139 0.2418 0.2804 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 912 REMARK 3 ANGLE : 1.258 1247 REMARK 3 CHIRALITY : 0.087 128 REMARK 3 PLANARITY : 0.007 160 REMARK 3 DIHEDRAL : 15.012 325 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): 38.2882 62.1847 32.0635 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.2624 REMARK 3 T33: 0.1895 T12: -0.0441 REMARK 3 T13: -0.0060 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.7404 L22: 2.0103 REMARK 3 L33: 0.4127 L12: -0.0565 REMARK 3 L13: 0.0713 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.2254 S13: 0.0192 REMARK 3 S21: 0.0019 S22: 0.0225 S23: -0.1402 REMARK 3 S31: -0.0409 S32: -0.0709 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): 45.9735 57.7243 33.2884 REMARK 3 T TENSOR REMARK 3 T11: 0.4709 T22: 0.6855 REMARK 3 T33: 0.8146 T12: -0.1108 REMARK 3 T13: -0.0660 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: -0.0009 REMARK 3 L33: 0.0041 L12: 0.0060 REMARK 3 L13: 0.0005 L23: 0.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.1726 S12: -0.0801 S13: -0.0670 REMARK 3 S21: 0.1697 S22: 0.1299 S23: -0.2852 REMARK 3 S31: -0.0215 S32: 0.0620 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PDB ENTRY 3LUO REMARK 4 REMARK 4 4ODP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.747 REMARK 200 RESOLUTION RANGE LOW (A) : 29.627 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 35.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 16.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.87200 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG400, 0.1 M HEPES, PH 7.5, 0.2 M REMARK 280 CALCIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.84500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.84500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 46.84500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 46.84500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 46.84500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 46.84500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 46.84500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 46.84500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 46.84500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 46.84500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 46.84500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 70.26750 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.42250 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 70.26750 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 70.26750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 70.26750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 23.42250 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 70.26750 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 23.42250 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 70.26750 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 23.42250 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 70.26750 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 23.42250 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 23.42250 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 70.26750 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 23.42250 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 70.26750 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 70.26750 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 70.26750 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 23.42250 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 70.26750 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 70.26750 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 23.42250 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 23.42250 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 23.42250 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 70.26750 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 23.42250 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 70.26750 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 23.42250 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 70.26750 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 70.26750 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 70.26750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 388 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 63 REMARK 465 GLY A 64 REMARK 465 ALA A 65 REMARK 465 THR A 66 REMARK 465 GLY A 67 REMARK 465 HIS A 68 REMARK 465 PRO A 69 REMARK 465 GLY A 70 REMARK 465 ILE A 71 REMARK 465 THR B 20 REMARK 465 ARG B 21 REMARK 465 TYR B 22 REMARK 465 ALA B 23 REMARK 465 ASN B 24 REMARK 465 PRO B 25 REMARK 465 LYS B 26 REMARK 465 PHE B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 465 NH2 B 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 359 O HOH A 397 2.08 REMARK 500 O HOH A 371 O HOH A 383 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 16 OE1 REMARK 620 2 HOH A 331 O 79.1 REMARK 620 3 HOH A 374 O 153.9 126.7 REMARK 620 4 HOH A 376 O 88.9 86.0 89.3 REMARK 620 5 HOH A 387 O 76.3 120.2 90.9 145.7 REMARK 620 6 HOH A 398 O 80.2 153.3 74.0 76.9 70.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 O REMARK 620 2 ASN A 35 OD1 66.5 REMARK 620 3 HOH A 321 O 91.7 96.4 REMARK 620 4 HOH A 353 O 98.7 90.6 169.1 REMARK 620 5 HOH A 375 O 152.2 141.3 84.1 85.3 REMARK 620 6 HOH A 384 O 118.8 61.1 66.0 110.8 84.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 49 OE2 REMARK 620 2 GLU A 49 OE1 52.8 REMARK 620 3 HOH A 320 O 82.6 135.3 REMARK 620 4 HOH A 363 O 103.3 89.8 105.3 REMARK 620 5 HOH A 370 O 86.8 84.1 91.2 161.5 REMARK 620 6 HOH A 388 O 110.6 58.1 164.4 80.2 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 52 O REMARK 620 2 HOH A 308 O 78.8 REMARK 620 3 HOH A 350 O 85.7 154.1 REMARK 620 4 HOH A 378 O 89.9 86.1 73.1 REMARK 620 5 HOH A 391 O 149.8 72.7 124.5 97.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 206 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 ND1 REMARK 620 2 HIS A 99 NE2 96.9 REMARK 620 3 HIS A 101 NE2 86.5 93.0 REMARK 620 4 HIS A 106 NE2 176.4 86.6 93.4 REMARK 620 5 HIS A 108 NE2 89.7 173.2 88.7 86.7 REMARK 620 6 HIS A 110 NE2 92.5 91.1 175.9 87.3 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ODK RELATED DB: PDB REMARK 900 RELATED ID: 4ODL RELATED DB: PDB REMARK 900 RELATED ID: 4ODM RELATED DB: PDB REMARK 900 RELATED ID: 4ODN RELATED DB: PDB REMARK 900 RELATED ID: 4ODO RELATED DB: PDB REMARK 900 RELATED ID: 4ODQ RELATED DB: PDB REMARK 900 RELATED ID: 4ODR RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN SLYD DELTA-IF IS A CHIMERA IN WHICH THE IF DOMAIN OF SYLD REMARK 999 (UNP RESIDUES 65-125) HAS BEEN REPLACED BY THE FLAP LOOP OF FKBP12 REMARK 999 (UNP RESIDUES 85-97). DBREF 4ODP A 1 64 UNP Q5SLE7 Q5SLE7_THET8 1 64 DBREF 4ODP A 65 77 UNP P62942 FKB1A_HUMAN 85 97 DBREF 4ODP A 78 101 UNP Q5SLE7 Q5SLE7_THET8 126 149 DBREF 4ODP B 20 34 UNP P0A7V0 RS2_ECOLI 20 34 SEQADV 4ODP PRO A 102 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP SER A 103 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP GLY A 104 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 105 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 106 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 107 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 108 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 109 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP HIS A 110 UNP Q5SLE7 EXPRESSION TAG SEQADV 4ODP ALA B 23 UNP P0A7V0 TRP 23 ENGINEERED MUTATION SEQADV 4ODP NH2 B 35 UNP P0A7V0 AMIDATION SEQRES 1 A 110 MET LYS VAL GLY GLN ASP LYS VAL VAL THR ILE ARG TYR SEQRES 2 A 110 THR LEU GLN VAL GLU GLY GLU VAL LEU ASP GLN GLY GLU SEQRES 3 A 110 LEU SER TYR LEU HIS GLY HIS ARG ASN LEU ILE PRO GLY SEQRES 4 A 110 LEU GLU GLU ALA LEU GLU GLY ARG GLU GLU GLY GLU ALA SEQRES 5 A 110 PHE GLN ALA HIS VAL PRO ALA GLU LYS ALA TYR GLY ALA SEQRES 6 A 110 THR GLY HIS PRO GLY ILE ILE PRO PRO HIS ALA THR LEU SEQRES 7 A 110 ASP PHE GLN VAL GLU VAL VAL LYS VAL ARG GLU ALA THR SEQRES 8 A 110 PRO GLU GLU LEU LEU HIS GLY HIS ALA HIS PRO SER GLY SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS SEQRES 1 B 16 THR ARG TYR ALA ASN PRO LYS MET LYS PRO PHE ILE PHE SEQRES 2 B 16 GLY ALA NH2 HET CL A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET NI A 206 1 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION FORMUL 3 CL CL 1- FORMUL 4 CA 4(CA 2+) FORMUL 8 NI NI 2+ FORMUL 9 HOH *101(H2 O) HELIX 1 1 ILE A 37 GLU A 45 1 9 HELIX 2 2 GLU A 60 ALA A 62 5 3 HELIX 3 3 THR A 91 GLY A 98 1 8 SHEET 1 A 4 GLU A 20 LEU A 30 0 SHEET 2 A 4 LYS A 7 VAL A 17 -1 N LEU A 15 O ASP A 23 SHEET 3 A 4 THR A 77 GLU A 89 -1 O ASP A 79 N GLN A 16 SHEET 4 A 4 ALA A 52 PRO A 58 -1 N VAL A 57 O LEU A 78 LINK OE1 GLN A 16 CA CA A 205 1555 1555 2.23 LINK O HIS A 33 CA CA A 204 1555 1555 2.27 LINK OD1 ASN A 35 CA CA A 204 1555 1555 2.60 LINK OE2 GLU A 49 CA CA A 202 1555 1555 2.42 LINK OE1 GLU A 49 CA CA A 202 1555 1555 2.49 LINK O ALA A 52 CA CA A 203 1555 1555 2.37 LINK ND1 HIS A 97 NI NI A 206 1555 1555 2.24 LINK NE2 HIS A 99 NI NI A 206 1555 1555 2.18 LINK NE2 HIS A 101 NI NI A 206 1555 1555 2.14 LINK NE2 HIS A 106 NI NI A 206 19555 1555 2.24 LINK NE2 HIS A 108 NI NI A 206 1555 1555 2.16 LINK NE2 HIS A 110 NI NI A 206 1555 1555 2.11 LINK CA CA A 202 O HOH A 320 1555 1555 2.49 LINK CA CA A 202 O HOH A 363 1555 1555 2.44 LINK CA CA A 202 O HOH A 370 1555 1555 2.31 LINK CA CA A 202 O HOH A 388 1555 1555 2.43 LINK CA CA A 203 O HOH A 308 1555 1555 2.33 LINK CA CA A 203 O HOH A 350 1555 1555 2.40 LINK CA CA A 203 O HOH A 378 1555 1555 2.34 LINK CA CA A 203 O HOH A 391 1555 1555 2.35 LINK CA CA A 204 O HOH A 321 1555 1555 2.37 LINK CA CA A 204 O HOH A 353 1555 1555 2.38 LINK CA CA A 204 O HOH A 375 1555 1555 2.46 LINK CA CA A 204 O HOH A 384 1555 1555 2.34 LINK CA CA A 205 O HOH A 331 1555 1555 2.43 LINK CA CA A 205 O HOH A 374 1555 1555 2.40 LINK CA CA A 205 O HOH A 376 1555 1555 2.37 LINK CA CA A 205 O HOH A 387 1555 1555 2.47 LINK CA CA A 205 O HOH A 398 1555 1555 2.52 CISPEP 1 LYS B 28 PRO B 29 0 -3.95 SITE 1 AC1 5 TYR A 29 LEU A 30 ASN A 35 ALA A 100 SITE 2 AC1 5 LYS B 28 SITE 1 AC2 5 GLU A 49 HOH A 320 HOH A 363 HOH A 370 SITE 2 AC2 5 HOH A 388 SITE 1 AC3 6 ALA A 52 GLU A 89 HOH A 308 HOH A 350 SITE 2 AC3 6 HOH A 378 HOH A 391 SITE 1 AC4 7 HIS A 33 ASN A 35 HOH A 305 HOH A 321 SITE 2 AC4 7 HOH A 353 HOH A 375 HOH A 384 SITE 1 AC5 6 GLN A 16 HOH A 331 HOH A 374 HOH A 376 SITE 2 AC5 6 HOH A 387 HOH A 398 SITE 1 AC6 6 HIS A 97 HIS A 99 HIS A 101 HIS A 106 SITE 2 AC6 6 HIS A 108 HIS A 110 CRYST1 93.690 93.690 93.690 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010673 0.00000