HEADER IMMUNE SYSTEM 10-JAN-14 4ODU TITLE UNLIGANDED FAB STRUCTURE OF LIPID A-SPECIFIC ANTIBODY S1-15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1-15 FAB (IGG2B KAPPA) LIGHT CHAIN; COMPND 3 CHAIN: L, B; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: S1-15 FAB (IGG2B) HEAVY CHAIN; COMPND 6 CHAIN: H, A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 STRAIN: BALB/C KEYWDS CARBOHYDRATE BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.HAJI-GHASSEMI,S.V.EVANS REVDAT 5 20-SEP-23 4ODU 1 REMARK REVDAT 4 22-NOV-17 4ODU 1 REMARK REVDAT 3 07-OCT-15 4ODU 1 JRNL REVDAT 2 01-JUL-15 4ODU 1 JRNL REVDAT 1 24-JUN-15 4ODU 0 JRNL AUTH O.HAJI-GHASSEMI,S.MULLER-LOENNIES,T.RODRIGUEZ,L.BRADE, JRNL AUTH 2 P.KOSMA,H.BRADE,S.V.EVANS JRNL TITL STRUCTURAL BASIS FOR ANTIBODY RECOGNITION OF LIPID A: JRNL TITL 2 INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. JRNL REF J.BIOL.CHEM. V. 290 19629 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26085093 JRNL DOI 10.1074/JBC.M115.657874 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 34731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1087 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 41.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.523 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.256 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.221 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6833 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6159 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9305 ; 1.418 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14235 ; 0.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 861 ; 6.586 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 278 ;36.612 ;24.029 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1083 ;15.596 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.284 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7766 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1574 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3462 ; 1.928 ; 3.073 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3461 ; 1.926 ; 3.072 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4317 ; 3.207 ; 4.597 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 L 1 212 B 1 212 10920 0.140 0.050 REMARK 3 2 H 0 223 A 0 223 11246 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 4ODU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084367. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 4ODT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 2000 MME, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.81900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 CYS H 127A REMARK 465 GLY H 127B REMARK 465 GLU B 213 REMARK 465 CYS B 214 REMARK 465 CYS A 127A REMARK 465 GLY A 127B REMARK 465 ASP A 127D REMARK 465 THR A 127E REMARK 465 THR A 127F REMARK 465 GLU A 211 REMARK 465 PRO A 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 167 OD1 ASP L 170 1.97 REMARK 500 OG SER A 202 OG1 THR A 204 2.13 REMARK 500 OG SER H 202 OG1 THR H 204 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 51 -54.55 69.96 REMARK 500 GLU L 81 3.52 -66.66 REMARK 500 ALA L 84 172.81 176.95 REMARK 500 LYS H 15 -2.01 72.35 REMARK 500 ASP H 65 -7.76 76.93 REMARK 500 ALA H 88 166.03 179.79 REMARK 500 SER H 149 85.20 175.78 REMARK 500 THR B 51 -54.23 68.05 REMARK 500 GLU B 81 4.24 -69.10 REMARK 500 ALA B 84 173.59 176.49 REMARK 500 LYS A 15 -1.49 70.11 REMARK 500 ASP A 65 -8.18 76.97 REMARK 500 ALA A 88 164.44 177.84 REMARK 500 LEU A 159 72.76 -118.17 REMARK 500 SER A 162 48.23 -107.26 REMARK 500 SER A 172 62.16 37.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 211 ASN B 212 147.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ODS RELATED DB: PDB REMARK 900 RELATED ID: 4ODT RELATED DB: PDB REMARK 900 RELATED ID: 4ODV RELATED DB: PDB REMARK 900 RELATED ID: 4ODW RELATED DB: PDB REMARK 900 RELATED ID: 4ODY RELATED DB: PDB REMARK 900 RELATED ID: 4ODZ RELATED DB: PDB REMARK 900 RELATED ID: 4OE0 RELATED DB: PDB DBREF 4ODU L 1 214 PDB 4ODU 4ODU 1 214 DBREF 4ODU B 1 214 PDB 4ODU 4ODU 1 214 DBREF 4ODU H 1 212 PDB 4ODU 4ODU 1 212 DBREF 4ODU A 1 212 PDB 4ODU 4ODU 1 212 SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER THR SER SER LEU SER ALA SEQRES 2 L 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO ASP GLY THR VAL LYS VAL LEU ILE TYR TYR THR SER SEQRES 5 L 214 ARG LEU ARG SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 L 214 ASN THR LEU PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 214 PHE ASN ARG ASN GLU CYS SEQRES 1 H 226 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 226 PRO LYS GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 226 PHE THR PHE ASN THR TYR ALA MET ASN TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 H 226 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 H 226 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 226 SER MET LEU TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 H 226 ASP THR ALA MET TYR TYR CYS VAL ARG HIS ARG GLY ALA SEQRES 9 H 226 PRO LEU TYR TYR GLY ASN GLY ALA TRP PHE ALA TYR TRP SEQRES 10 H 226 GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA LYS THR SEQRES 11 H 226 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY CYS GLY SEQRES 12 H 226 ASP THR THR GLY SER SER VAL THR SER GLY CYS LEU VAL SEQRES 13 H 226 LYS GLY TYR PHE PRO GLU SER VAL THR VAL THR TRP ASN SEQRES 14 H 226 SER GLY SER LEU SER SER SER VAL HIS THR PHE PRO ALA SEQRES 15 H 226 LEU LEU GLN SER GLY LEU TYR THR MET SER SER SER VAL SEQRES 16 H 226 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 17 H 226 CYS SER VAL ALA HIS PRO ALA SER SER THR THR VAL ASP SEQRES 18 H 226 LYS LYS LEU GLU PRO SEQRES 1 B 214 ASP ILE GLN MET THR GLN SER THR SER SER LEU SER ALA SEQRES 2 B 214 SER LEU GLY ASP ARG VAL THR ILE SER CYS ARG ALA SER SEQRES 3 B 214 GLN ASP ILE SER ASN TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 B 214 PRO ASP GLY THR VAL LYS VAL LEU ILE TYR TYR THR SER SEQRES 5 B 214 ARG LEU ARG SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 214 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 B 214 GLU GLN GLU ASP ILE ALA THR TYR PHE CYS GLN GLN GLY SEQRES 8 B 214 ASN THR LEU PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 214 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 B 214 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 B 214 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 B 214 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 B 214 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 B 214 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 B 214 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 B 214 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 B 214 PHE ASN ARG ASN GLU CYS SEQRES 1 A 226 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 226 PRO LYS GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 226 PHE THR PHE ASN THR TYR ALA MET ASN TRP VAL ARG GLN SEQRES 4 A 226 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 A 226 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 A 226 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 A 226 SER MET LEU TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 A 226 ASP THR ALA MET TYR TYR CYS VAL ARG HIS ARG GLY ALA SEQRES 9 A 226 PRO LEU TYR TYR GLY ASN GLY ALA TRP PHE ALA TYR TRP SEQRES 10 A 226 GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA LYS THR SEQRES 11 A 226 THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY CYS GLY SEQRES 12 A 226 ASP THR THR GLY SER SER VAL THR SER GLY CYS LEU VAL SEQRES 13 A 226 LYS GLY TYR PHE PRO GLU SER VAL THR VAL THR TRP ASN SEQRES 14 A 226 SER GLY SER LEU SER SER SER VAL HIS THR PHE PRO ALA SEQRES 15 A 226 LEU LEU GLN SER GLY LEU TYR THR MET SER SER SER VAL SEQRES 16 A 226 THR VAL PRO SER SER THR TRP PRO SER GLU THR VAL THR SEQRES 17 A 226 CYS SER VAL ALA HIS PRO ALA SER SER THR THR VAL ASP SEQRES 18 A 226 LYS LYS LEU GLU PRO HET SO4 H 301 5 HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *300(H2 O) HELIX 1 1 GLU L 79 ILE L 83 5 5 HELIX 2 2 SER L 121 SER L 127 1 7 HELIX 3 3 LYS L 183 ARG L 188 1 6 HELIX 4 4 THR H 28 TYR H 32 5 5 HELIX 5 5 SER H 52A ASN H 54 5 5 HELIX 6 6 ASP H 73 GLN H 75 5 3 HELIX 7 7 LYS H 83 THR H 87 5 5 HELIX 8 8 ALA H 98 GLY H 100C 1 6 HELIX 9 9 SER H 156 SER H 158 5 3 HELIX 10 10 SER H 186 TRP H 188 5 3 HELIX 11 11 PRO H 200 SER H 203 5 4 HELIX 12 12 GLU B 79 ILE B 83 5 5 HELIX 13 13 SER B 121 SER B 127 1 7 HELIX 14 14 LYS B 183 ARG B 188 1 6 HELIX 15 15 THR A 28 TYR A 32 5 5 HELIX 16 16 SER A 52A ASN A 54 5 5 HELIX 17 17 ASP A 73 GLN A 75 5 3 HELIX 18 18 LYS A 83 THR A 87 5 5 HELIX 19 19 ALA A 98 GLY A 100C 1 6 HELIX 20 20 SER A 156 SER A 158 5 3 HELIX 21 21 SER A 186 TRP A 188 5 3 HELIX 22 22 PRO A 200 SER A 203 5 4 SHEET 1 A 4 MET L 4 GLN L 6 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 B 6 VAL L 44 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ARG L 53 LEU L 54 -1 O ARG L 53 N TYR L 49 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 102 LYS L 107 1 O LYS L 107 N ALA L 13 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O ASN L 137 N THR L 114 SHEET 3 D 4 TYR L 173 THR L 182 -1 O MET L 175 N LEU L 136 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 E 4 SER L 153 ARG L 155 0 SHEET 2 E 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 E 4 SER L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 E 4 ILE L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 F 4 MET H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 F 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 G 6 ALA H 88 HIS H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 G 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 57 TYR H 59 -1 O TYR H 58 N ARG H 50 SHEET 1 H 4 LEU H 11 VAL H 12 0 SHEET 2 H 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 H 4 ALA H 88 HIS H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 H 4 PHE H 100H TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 I 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 I 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 SER H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 J 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 145 SHEET 4 J 4 LEU H 169 LEU H 170 -1 N LEU H 169 O THR H 176 SHEET 1 K 3 THR H 151 TRP H 154 0 SHEET 2 K 3 THR H 194 HIS H 199 -1 O SER H 196 N THR H 153 SHEET 3 K 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 L 4 MET B 4 THR B 5 0 SHEET 2 L 4 VAL B 19 ALA B 25 -1 O ARG B 24 N THR B 5 SHEET 3 L 4 ASP B 70 ILE B 75 -1 O TYR B 71 N CYS B 23 SHEET 4 L 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 M 6 SER B 10 SER B 14 0 SHEET 2 M 6 THR B 102 LYS B 107 1 O LYS B 107 N ALA B 13 SHEET 3 M 6 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 104 SHEET 4 M 6 LEU B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 M 6 VAL B 44 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 M 6 ARG B 53 LEU B 54 -1 O ARG B 53 N TYR B 49 SHEET 1 N 4 SER B 10 SER B 14 0 SHEET 2 N 4 THR B 102 LYS B 107 1 O LYS B 107 N ALA B 13 SHEET 3 N 4 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 104 SHEET 4 N 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SHEET 1 O 4 THR B 114 PHE B 118 0 SHEET 2 O 4 GLY B 129 PHE B 139 -1 O ASN B 137 N THR B 114 SHEET 3 O 4 TYR B 173 THR B 182 -1 O MET B 175 N LEU B 136 SHEET 4 O 4 VAL B 159 TRP B 163 -1 N SER B 162 O SER B 176 SHEET 1 P 4 SER B 153 ARG B 155 0 SHEET 2 P 4 ASN B 145 ILE B 150 -1 N ILE B 150 O SER B 153 SHEET 3 P 4 SER B 191 HIS B 198 -1 O GLU B 195 N LYS B 147 SHEET 4 P 4 SER B 201 ASN B 210 -1 O LYS B 207 N CYS B 194 SHEET 1 Q 4 GLN A 3 SER A 7 0 SHEET 2 Q 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 Q 4 MET A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 Q 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 R 6 LEU A 11 VAL A 12 0 SHEET 2 R 6 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 R 6 ALA A 88 HIS A 95 -1 N TYR A 90 O THR A 107 SHEET 4 R 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 R 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 R 6 THR A 57 TYR A 59 -1 O TYR A 58 N ARG A 50 SHEET 1 S 4 LEU A 11 VAL A 12 0 SHEET 2 S 4 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 S 4 ALA A 88 HIS A 95 -1 N TYR A 90 O THR A 107 SHEET 4 S 4 PHE A 100H TRP A 103 -1 O TYR A 102 N ARG A 94 SHEET 1 T 4 SER A 120 LEU A 124 0 SHEET 2 T 4 SER A 135 TYR A 145 -1 O LYS A 143 N SER A 120 SHEET 3 T 4 LEU A 174 PRO A 184 -1 O TYR A 175 N TYR A 145 SHEET 4 T 4 VAL A 163 THR A 165 -1 N HIS A 164 O SER A 180 SHEET 1 U 4 SER A 120 LEU A 124 0 SHEET 2 U 4 SER A 135 TYR A 145 -1 O LYS A 143 N SER A 120 SHEET 3 U 4 LEU A 174 PRO A 184 -1 O TYR A 175 N TYR A 145 SHEET 4 U 4 LEU A 169 GLN A 171 -1 N GLN A 171 O LEU A 174 SHEET 1 V 3 THR A 151 TRP A 154 0 SHEET 2 V 3 THR A 194 HIS A 199 -1 O SER A 196 N THR A 153 SHEET 3 V 3 THR A 204 LYS A 209 -1 O VAL A 206 N VAL A 197 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.18 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.09 SSBOND 4 CYS H 140 CYS H 195 1555 1555 2.05 SSBOND 5 CYS B 23 CYS B 88 1555 1555 2.15 SSBOND 6 CYS B 134 CYS B 194 1555 1555 2.05 SSBOND 7 CYS A 22 CYS A 92 1555 1555 2.09 SSBOND 8 CYS A 140 CYS A 195 1555 1555 2.06 CISPEP 1 LEU L 94 PRO L 95 0 -1.79 CISPEP 2 TYR L 140 PRO L 141 0 5.43 CISPEP 3 PHE H 146 PRO H 147 0 -3.79 CISPEP 4 GLN H 171 SER H 172 0 19.90 CISPEP 5 TRP H 188 PRO H 189 0 5.70 CISPEP 6 LEU B 94 PRO B 95 0 -4.91 CISPEP 7 TYR B 140 PRO B 141 0 4.16 CISPEP 8 PHE A 146 PRO A 147 0 -6.33 CISPEP 9 GLU A 148 SER A 149 0 9.11 CISPEP 10 TRP A 188 PRO A 189 0 7.29 SITE 1 AC1 7 ARG H 52 ARG H 96 HOH H 403 HOH H 420 SITE 2 AC1 7 HOH H 428 HOH H 447 HOH H 477 SITE 1 AC2 5 ALA A 33 ARG A 52 ARG A 96 HOH A 407 SITE 2 AC2 5 HOH A 425 CRYST1 75.787 77.638 71.958 90.00 96.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013195 0.000000 0.001580 0.00000 SCALE2 0.000000 0.012880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013996 0.00000