HEADER MEMBRANE BINDING PROTEIN 13-JAN-14 4OEJ TITLE STRUCTURE OF MEMBRANE BINDING PROTEIN PLEUROTOLYSIN B FROM PLEUROTUS TITLE 2 OSTREATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLEUROTOLYSIN B; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS OSTREATUS; SOURCE 3 ORGANISM_COMMON: OYSTER MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5322; SOURCE 5 GENE: PLYB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACPF DOMAIN, PORE FORMATION, PLEUROTOLYSIN A, MEMBRANE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.DUNSTONE,T.T.CARADOC-DAVIES,J.C.WHISSTOCK,R.H.P.LAW REVDAT 2 28-FEB-24 4OEJ 1 REMARK REVDAT 1 18-FEB-15 4OEJ 0 JRNL AUTH N.LUKOYANOVA,S.C.KONDOS,I.FARABELLA,R.H.LAW,C.F.REBOUL, JRNL AUTH 2 T.T.CARADOC-DAVIES,B.A.SPICER,O.KLEIFELD,D.A.TRAORE, JRNL AUTH 3 S.M.EKKEL,I.VOSKOBOINIK,J.A.TRAPANI,T.HATFALUDI,K.OLIVER, JRNL AUTH 4 E.M.HOTZE,R.K.TWETEN,J.C.WHISSTOCK,M.TOPF,H.R.SAIBIL, JRNL AUTH 5 M.A.DUNSTONE JRNL TITL CONFORMATIONAL CHANGES DURING PORE FORMATION BY THE JRNL TITL 2 PERFORIN-RELATED PROTEIN PLEUROTOLYSIN. JRNL REF PLOS BIOL. V. 13 02049 2015 JRNL REFN ISSN 1544-9173 JRNL PMID 25654333 JRNL DOI 10.1371/JOURNAL.PBIO.1002049 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1361 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2807 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2023 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2690 REMARK 3 BIN R VALUE (WORKING SET) : 0.2016 REMARK 3 BIN FREE R VALUE : 0.2178 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 117 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.87870 REMARK 3 B22 (A**2) : -0.87870 REMARK 3 B33 (A**2) : 1.75740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.396 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.233 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.180 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.226 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.179 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3586 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4876 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1180 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 74 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 532 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3586 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 482 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4093 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.4198 22.2295 13.7641 REMARK 3 T TENSOR REMARK 3 T11: -0.1934 T22: -0.2021 REMARK 3 T33: -0.1588 T12: 0.0286 REMARK 3 T13: -0.0029 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.8232 L22: 1.7325 REMARK 3 L33: 4.8932 L12: -0.3779 REMARK 3 L13: 1.0130 L23: 0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.0984 S12: -0.0926 S13: 0.0117 REMARK 3 S21: 0.0992 S22: 0.0984 S23: -0.1017 REMARK 3 S31: -0.0164 S32: -0.1146 S33: -0.0001 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-08; 18-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 6 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON; REMARK 200 AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1; MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797; 0.95665 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111); DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R; ADSC QUANTUM REMARK 200 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 87.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE, PH 5.6, 20% REMARK 280 W/V PEG4000, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.61333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 116.61333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.30667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 465 GLN A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 ILE A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 PHE A 18 REMARK 465 GLN A 19 REMARK 465 ASP A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 VAL A 25 REMARK 465 GLY A 26 REMARK 465 LEU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 PRO A 32 REMARK 465 SER A 33 REMARK 465 THR A 34 REMARK 465 ARG A 35 REMARK 465 ILE A 36 REMARK 465 ARG A 37 REMARK 465 ARG A 38 REMARK 465 GLN A 39 REMARK 465 ALA A 40 REMARK 465 ASP A 41 REMARK 465 ASN A 42 REMARK 465 VAL A 43 REMARK 465 VAL A 44 REMARK 465 LEU A 45 REMARK 465 LYS A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 SER A 49 REMARK 465 GLN A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 ASP A 53 REMARK 465 THR A 54 REMARK 465 ASP A 183 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 GLU A 522 REMARK 465 LYS A 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 ILE A 59 CG1 CG2 CD1 REMARK 470 GLN A 60 CD OE1 NE2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 ARG A 65 NE CZ NH1 NH2 REMARK 470 ASP A 97 OD1 OD2 REMARK 470 ARG A 106 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 152 CE NZ REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 SER A 180 OG REMARK 470 PHE A 182 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 GLN A 197 CD OE1 NE2 REMARK 470 LYS A 202 CD CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 THR A 270 OG1 CG2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 ASN A 304 CG OD1 ND2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 SER A 315 OG REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 ILE A 337 CG1 CG2 CD1 REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 LYS A 357 CE NZ REMARK 470 LEU A 361 CG CD1 CD2 REMARK 470 GLU A 362 CG CD OE1 OE2 REMARK 470 LEU A 364 CG CD1 CD2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 ILE A 375 CG1 CG2 CD1 REMARK 470 LYS A 390 CE NZ REMARK 470 MET A 417 CG SD CE REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 THR A 467 OG1 CG2 REMARK 470 LYS A 497 CE NZ REMARK 470 ASP A 519 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 62 -155.16 -94.51 REMARK 500 ASN A 104 101.85 -161.28 REMARK 500 ASP A 179 57.15 70.06 REMARK 500 ALA A 269 -35.28 -132.84 REMARK 500 GLN A 335 -58.72 -22.75 REMARK 500 ASP A 479 40.00 -98.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OEB RELATED DB: PDB DBREF 4OEJ A 1 523 UNP Q5W9E8 Q5W9E8_PLEOS 1 523 SEQRES 1 A 523 MET GLU ALA VAL LEU SER ARG GLN ALA ALA THR ALA GLU SEQRES 2 A 523 ALA ILE GLY ARG PHE GLN ASP SER SER THR SER VAL GLY SEQRES 3 A 523 LEU VAL ALA GLY SER PRO SER THR ARG ILE ARG ARG GLN SEQRES 4 A 523 ALA ASP ASN VAL VAL LEU LYS SER THR SER GLN ALA GLY SEQRES 5 A 523 ASP THR LEU ASN ASP VAL ILE GLN ASP PRO THR ARG ARG SEQRES 6 A 523 ASN LYS LEU ILE ASN ASP ASN ASN LEU LEU LYS GLY ILE SEQRES 7 A 523 ILE MET GLY ARG ASP GLY PRO VAL PRO SER SER ARG GLU SEQRES 8 A 523 LEU ILE VAL ARG PRO ASP THR LEU ARG ALA ILE ILE ASN SEQRES 9 A 523 ASN ARG ALA THR ILE GLU THR THR THR MET GLU ALA GLU SEQRES 10 A 523 PHE THR GLU THR LEU MET GLU SER ASN TYR ASN SER ALA SEQRES 11 A 523 SER VAL LYS VAL SER ALA PRO PHE ILE THR ALA ASN SER SEQRES 12 A 523 GLU TYR SER GLU SER SER SER PHE LYS ASN THR GLU THR SEQRES 13 A 523 GLU LYS SER MET TYR THR SER SER ARG TYR LEU PHE PRO SEQRES 14 A 523 GLN GLY ARG ILE ASP PHE THR THR PRO ASP SER GLY PHE SEQRES 15 A 523 ASP ASP VAL ILE LYS LEU SER PRO GLN PHE THR SER GLY SEQRES 16 A 523 VAL GLN ALA ALA LEU ALA LYS ALA THR GLY THR GLU LYS SEQRES 17 A 523 ARG GLU ALA LEU GLN ASN LEU PHE GLN GLU TYR GLY HIS SEQRES 18 A 523 VAL PHE ARG THR LYS VAL HIS ILE GLY GLY VAL LEU SER SEQRES 19 A 523 ALA HIS THR MET GLU THR PHE SER ARG SER GLU ASN GLU SEQRES 20 A 523 THR GLU VAL LYS GLN ASP VAL LYS ALA GLY LEU GLU GLY SEQRES 21 A 523 ALA VAL LYS GLY TRP GLY GLY GLY ALA THR ALA GLY HIS SEQRES 22 A 523 GLY ASN THR GLN GLY THR ILE THR THR SER GLN ASN ARG SEQRES 23 A 523 LYS LEU ASN VAL LYS TYR ILE VAL ASN GLY GLY ASP TYR SEQRES 24 A 523 THR LYS ILE GLN ASN THR GLU GLU TRP VAL ALA SER THR SEQRES 25 A 523 ASN GLN SER GLU HIS TRP ARG VAL ILE GLU VAL THR GLU SEQRES 26 A 523 VAL THR ALA VAL ALA ASP LEU LEU PRO GLN PRO ILE ARG SEQRES 27 A 523 GLY GLN VAL LYS ASP LEU LEU LYS PRO LEU LEU GLY LYS SEQRES 28 A 523 TRP VAL ASP VAL GLU LYS VAL PRO GLY LEU GLU SER LEU SEQRES 29 A 523 PRO VAL SER VAL TYR ARG PRO LYS GLY ALA ILE PRO ALA SEQRES 30 A 523 GLY TRP PHE TRP LEU GLY ASP THR ALA ASP ALA SER LYS SEQRES 31 A 523 ALA LEU LEU VAL LYS PRO THR LEU PRO ALA ARG SER GLY SEQRES 32 A 523 ARG ASN PRO ALA LEU THR SER LEU HIS GLN GLY SER GLY SEQRES 33 A 523 MET THR GLU GLN PRO PHE VAL ASP LEU PRO GLN TYR GLN SEQRES 34 A 523 TYR LEU SER THR TYR PHE GLY SER PHE ALA HIS ASP THR SEQRES 35 A 523 PRO PRO GLY SER THR LEU ARG GLY LEU ARG PRO ASP HIS SEQRES 36 A 523 VAL LEU PRO GLY ARG TYR GLU MET HIS GLY ASP THR ILE SEQRES 37 A 523 SER THR ALA VAL TYR VAL THR ARG PRO VAL ASP VAL PRO SEQRES 38 A 523 PHE PRO GLU ASP GLU CYS PHE ASP LEU LYS SER LEU VAL SEQRES 39 A 523 ARG VAL LYS LEU PRO GLY SER GLY ASN PRO PRO LYS PRO SEQRES 40 A 523 ARG SER ALA LEU LYS LYS SER MET VAL LEU PHE ASP SER SEQRES 41 A 523 GLY GLU LYS HET ACT A 601 4 HET GOL A 602 6 HET GOL A 603 6 HET ACT A 604 4 HET ACT A 605 4 HET GOL A 606 6 HET ACT A 607 4 HET GOL A 608 6 HET CL A 609 1 HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACT 4(C2 H3 O2 1-) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 10 CL CL 1- FORMUL 11 HOH *160(H2 O) HELIX 1 1 LEU A 55 ASP A 61 1 7 HELIX 2 2 THR A 63 ASN A 72 1 10 HELIX 3 3 THR A 119 GLU A 124 1 6 HELIX 4 4 ASN A 128 SER A 143 1 16 HELIX 5 5 SER A 189 ALA A 201 1 13 HELIX 6 6 THR A 204 GLY A 220 1 17 HELIX 7 7 ASN A 246 GLY A 266 1 21 HELIX 8 8 ASP A 298 ILE A 302 5 5 HELIX 9 9 ASN A 304 THR A 312 1 9 HELIX 10 10 ASN A 313 TRP A 318 5 6 HELIX 11 11 ALA A 330 LEU A 333 5 4 HELIX 12 12 PRO A 334 LEU A 345 1 12 HELIX 13 13 PRO A 444 LEU A 448 5 5 SHEET 1 A 2 ILE A 78 GLY A 81 0 SHEET 2 A 2 GLY A 84 PRO A 87 -1 O VAL A 86 N ILE A 79 SHEET 1 B 5 ARG A 100 ILE A 103 0 SHEET 2 B 5 GLU A 157 ASP A 174 -1 O ASP A 174 N ARG A 100 SHEET 3 B 5 VAL A 222 SER A 242 -1 O LEU A 233 N TYR A 166 SHEET 4 B 5 LYS A 287 ASN A 295 -1 O ILE A 293 N SER A 234 SHEET 5 B 5 THR A 276 THR A 281 -1 N GLY A 278 O VAL A 290 SHEET 1 C 4 THR A 108 MET A 114 0 SHEET 2 C 4 GLU A 157 ASP A 174 -1 O TYR A 161 N MET A 114 SHEET 3 C 4 VAL A 222 SER A 242 -1 O LEU A 233 N TYR A 166 SHEET 4 C 4 ARG A 319 ALA A 328 -1 O ILE A 321 N HIS A 228 SHEET 1 D 3 ALA A 391 PRO A 396 0 SHEET 2 D 3 LEU A 348 VAL A 353 -1 N VAL A 353 O ALA A 391 SHEET 3 D 3 VAL A 516 PHE A 518 1 O LEU A 517 N LEU A 348 SHEET 1 E 2 VAL A 355 LYS A 357 0 SHEET 2 E 2 TYR A 369 PRO A 371 -1 O ARG A 370 N GLU A 356 SHEET 1 F 2 LEU A 408 THR A 409 0 SHEET 2 F 2 GLY A 450 LEU A 451 -1 O GLY A 450 N THR A 409 SHEET 1 G 2 LEU A 411 GLN A 413 0 SHEET 2 G 2 PRO A 421 VAL A 423 -1 O PHE A 422 N HIS A 412 SHEET 1 H 2 VAL A 456 PRO A 458 0 SHEET 2 H 2 SER A 509 LEU A 511 -1 O ALA A 510 N LEU A 457 SHEET 1 I 3 ARG A 460 HIS A 464 0 SHEET 2 I 3 VAL A 472 ARG A 476 -1 O ARG A 476 N ARG A 460 SHEET 3 I 3 SER A 492 ARG A 495 -1 O VAL A 494 N TYR A 473 CISPEP 1 GLY A 373 ALA A 374 0 -3.95 CISPEP 2 PRO A 443 PRO A 444 0 2.33 SITE 1 AC1 3 LYS A 395 PRO A 396 LEU A 398 SITE 1 AC2 6 TRP A 381 LEU A 382 GLY A 383 ALA A 391 SITE 2 AC2 6 LEU A 392 HOH A 771 SITE 1 AC3 7 ILE A 109 GLU A 110 THR A 111 LYS A 255 SITE 2 AC3 7 GLU A 259 GOL A 608 HOH A 803 SITE 1 AC4 2 PHE A 380 ARG A 449 SITE 1 AC5 2 GLU A 124 ASN A 289 SITE 1 AC6 7 GLU A 117 THR A 140 PRO A 453 ASP A 454 SITE 2 AC6 7 VAL A 456 LEU A 457 LYS A 512 SITE 1 AC7 3 SER A 125 ASN A 295 HOH A 853 SITE 1 AC8 7 THR A 111 THR A 112 ASN A 128 SER A 129 SITE 2 AC8 7 ALA A 130 ARG A 165 GOL A 603 SITE 1 AC9 2 GLY A 414 SER A 415 CRYST1 71.580 71.580 174.920 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013970 0.008066 0.000000 0.00000 SCALE2 0.000000 0.016132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005717 0.00000