HEADER CELL ADHESION 13-JAN-14 4OEQ OBSLTE 01-APR-15 4OEQ 4YYX TITLE CRYSTAL STRUCTURE OF THE ZO-1 PDZ1 DOMAIN IN COMPLEX WITH THE 7-MER TITLE 2 CLAUDIN2 C-TERMINAL TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIGHT JUNCTION PROTEIN ZO-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PDZ1 DOMAIN, UNP RESIDUES 18-110; COMPND 5 SYNONYM: TIGHT JUNCTION PROTEIN 1, ZONA OCCLUDENS PROTEIN 1, ZONULA COMPND 6 OCCLUDENS PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TJP1, ZO1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS MAGUK, PDZ1, SCAFFOLDING, CELL ADHESION, CLAUDIN, TIGHT JUNCTION KEYWDS 2 ASSEMBLY EXPDTA X-RAY DIFFRACTION AUTHOR J.NOMME,A.LAVIE REVDAT 2 01-APR-15 4OEQ 1 OBSLTE REVDAT 1 14-JAN-15 4OEQ 0 JRNL AUTH J.NOMME,A.ANTANASIJEVICAND,M.CAFFREY,C.M.VAN ITALLIE, JRNL AUTH 2 J.M.ANDERSON,A.S.FANNING,A.LAVIE JRNL TITL ELUCIDATION OF A KEY FACTOR DETERMINING THE INTERACTION JRNL TITL 2 AFFINITY BETWEEN THE ZO-1 PDZ1 DOMAIN AND CLAUDINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 35877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2391 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 309 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 5.16000 REMARK 3 B33 (A**2) : -4.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3189 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3039 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4303 ; 1.585 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6953 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;34.174 ;23.776 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;15.006 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.433 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3772 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 780 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 1.291 ; 2.027 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1667 ; 1.285 ; 2.023 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2080 ; 1.885 ; 3.031 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2081 ; 1.886 ; 3.031 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 1.417 ; 2.183 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1518 ; 1.417 ; 2.184 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2220 ; 2.118 ; 3.222 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3714 ; 3.822 ;16.805 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3715 ; 3.822 ;16.809 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.519 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H, -K, -L REMARK 3 TWIN FRACTION : 0.481 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4OEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-14. REMARK 100 THE RCSB ID CODE IS RCSB084399. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : C111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38123 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : 2.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M NAF, 0.1 M NAAC PH 4.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.09000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 SER A 15 REMARK 465 HIS A 16 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 HIS B 16 REMARK 465 MET B 17 REMARK 465 GLY C 14 REMARK 465 SER C 15 REMARK 465 HIS C 16 REMARK 465 GLY D 14 REMARK 465 SER D 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ILE B 18 CG1 CG2 CD1 REMARK 470 ARG B 42 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 ILE C 18 CG1 CG2 CD1 REMARK 470 GLN C 21 CG CD OE1 NE2 REMARK 470 GLN C 93 CG CD OE1 NE2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 LYS D 61 CG CD CE NZ REMARK 470 LYS D 100 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 71 O HOH C 367 2.07 REMARK 500 OG SER A 115 O HOH A 360 2.13 REMARK 500 OG1 THR B 23 OG1 THR B 105 2.14 REMARK 500 OG SER B 98 O ASN B 101 2.16 REMARK 500 O PRO A 30 O HOH A 325 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 68 -51.01 -129.47 REMARK 500 ASN B 44 63.89 -151.97 REMARK 500 GLN B 68 -53.85 -132.79 REMARK 500 PRO C 30 129.50 -37.03 REMARK 500 ASN C 72 -2.19 81.28 REMARK 500 ASN C 85 18.24 48.17 REMARK 500 PRO D 30 119.51 -31.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 30 GLY B 31 -33.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OEO RELATED DB: PDB REMARK 900 THE SAME PROTEIN UNLIGANDED REMARK 900 RELATED ID: 4OEP RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH THE 7-MER CLAUDIN1 C- REMARK 900 TERMINAL TAIL BOUND DBREF 4OEQ A 18 110 UNP Q07157 ZO1_HUMAN 18 110 DBREF 4OEQ B 18 110 UNP Q07157 ZO1_HUMAN 18 110 DBREF 4OEQ C 18 110 UNP Q07157 ZO1_HUMAN 18 110 DBREF 4OEQ D 18 110 UNP Q07157 ZO1_HUMAN 18 110 SEQADV 4OEQ GLY A 14 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER A 15 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ HIS A 16 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ MET A 17 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY A 111 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY A 112 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY A 113 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR A 114 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER A 115 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ LEU A 116 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ THR A 117 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY A 118 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR A 119 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ VAL A 120 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY B 14 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER B 15 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ HIS B 16 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ MET B 17 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY B 111 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY B 112 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY B 113 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR B 114 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER B 115 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ LEU B 116 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ THR B 117 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY B 118 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR B 119 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ VAL B 120 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY C 14 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER C 15 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ HIS C 16 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ MET C 17 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY C 111 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY C 112 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY C 113 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR C 114 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER C 115 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ LEU C 116 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ THR C 117 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY C 118 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR C 119 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ VAL C 120 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY D 14 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER D 15 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ HIS D 16 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ MET D 17 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY D 111 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY D 112 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY D 113 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR D 114 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ SER D 115 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ LEU D 116 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ THR D 117 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ GLY D 118 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ TYR D 119 UNP Q07157 EXPRESSION TAG SEQADV 4OEQ VAL D 120 UNP Q07157 EXPRESSION TAG SEQRES 1 A 107 GLY SER HIS MET ILE TRP GLU GLN HIS THR VAL THR LEU SEQRES 2 A 107 HIS ARG ALA PRO GLY PHE GLY PHE GLY ILE ALA ILE SER SEQRES 3 A 107 GLY GLY ARG ASP ASN PRO HIS PHE GLN SER GLY GLU THR SEQRES 4 A 107 SER ILE VAL ILE SER ASP VAL LEU LYS GLY GLY PRO ALA SEQRES 5 A 107 GLU GLY GLN LEU GLN GLU ASN ASP ARG VAL ALA MET VAL SEQRES 6 A 107 ASN GLY VAL SER MET ASP ASN VAL GLU HIS ALA PHE ALA SEQRES 7 A 107 VAL GLN GLN LEU ARG LYS SER GLY LYS ASN ALA LYS ILE SEQRES 8 A 107 THR ILE ARG ARG LYS LYS GLY GLY GLY TYR SER LEU THR SEQRES 9 A 107 GLY TYR VAL SEQRES 1 B 107 GLY SER HIS MET ILE TRP GLU GLN HIS THR VAL THR LEU SEQRES 2 B 107 HIS ARG ALA PRO GLY PHE GLY PHE GLY ILE ALA ILE SER SEQRES 3 B 107 GLY GLY ARG ASP ASN PRO HIS PHE GLN SER GLY GLU THR SEQRES 4 B 107 SER ILE VAL ILE SER ASP VAL LEU LYS GLY GLY PRO ALA SEQRES 5 B 107 GLU GLY GLN LEU GLN GLU ASN ASP ARG VAL ALA MET VAL SEQRES 6 B 107 ASN GLY VAL SER MET ASP ASN VAL GLU HIS ALA PHE ALA SEQRES 7 B 107 VAL GLN GLN LEU ARG LYS SER GLY LYS ASN ALA LYS ILE SEQRES 8 B 107 THR ILE ARG ARG LYS LYS GLY GLY GLY TYR SER LEU THR SEQRES 9 B 107 GLY TYR VAL SEQRES 1 C 107 GLY SER HIS MET ILE TRP GLU GLN HIS THR VAL THR LEU SEQRES 2 C 107 HIS ARG ALA PRO GLY PHE GLY PHE GLY ILE ALA ILE SER SEQRES 3 C 107 GLY GLY ARG ASP ASN PRO HIS PHE GLN SER GLY GLU THR SEQRES 4 C 107 SER ILE VAL ILE SER ASP VAL LEU LYS GLY GLY PRO ALA SEQRES 5 C 107 GLU GLY GLN LEU GLN GLU ASN ASP ARG VAL ALA MET VAL SEQRES 6 C 107 ASN GLY VAL SER MET ASP ASN VAL GLU HIS ALA PHE ALA SEQRES 7 C 107 VAL GLN GLN LEU ARG LYS SER GLY LYS ASN ALA LYS ILE SEQRES 8 C 107 THR ILE ARG ARG LYS LYS GLY GLY GLY TYR SER LEU THR SEQRES 9 C 107 GLY TYR VAL SEQRES 1 D 107 GLY SER HIS MET ILE TRP GLU GLN HIS THR VAL THR LEU SEQRES 2 D 107 HIS ARG ALA PRO GLY PHE GLY PHE GLY ILE ALA ILE SER SEQRES 3 D 107 GLY GLY ARG ASP ASN PRO HIS PHE GLN SER GLY GLU THR SEQRES 4 D 107 SER ILE VAL ILE SER ASP VAL LEU LYS GLY GLY PRO ALA SEQRES 5 D 107 GLU GLY GLN LEU GLN GLU ASN ASP ARG VAL ALA MET VAL SEQRES 6 D 107 ASN GLY VAL SER MET ASP ASN VAL GLU HIS ALA PHE ALA SEQRES 7 D 107 VAL GLN GLN LEU ARG LYS SER GLY LYS ASN ALA LYS ILE SEQRES 8 D 107 THR ILE ARG ARG LYS LYS GLY GLY GLY TYR SER LEU THR SEQRES 9 D 107 GLY TYR VAL HET ACT A 201 4 HET ACT B 201 4 HET ACT C 201 4 HET ACT D 201 4 HETNAM ACT ACETATE ION FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 9 HOH *309(H2 O) HELIX 1 1 GLU A 87 LYS A 97 1 11 HELIX 2 2 GLU B 87 LYS B 97 1 11 HELIX 3 3 GLU C 87 LYS C 97 1 11 HELIX 4 4 GLU D 87 LYS D 97 1 11 SHEET 1 A 4 GLU A 20 HIS A 27 0 SHEET 2 A 4 ASN A 101 ARG A 108 -1 O ILE A 106 N HIS A 22 SHEET 3 A 4 ARG A 74 VAL A 78 -1 N ARG A 74 O ARG A 107 SHEET 4 A 4 VAL A 81 SER A 82 -1 O VAL A 81 N VAL A 78 SHEET 1 B 2 ILE A 36 SER A 39 0 SHEET 2 B 2 VAL A 55 VAL A 59 -1 O VAL A 55 N SER A 39 SHEET 1 C 4 GLU B 20 HIS B 27 0 SHEET 2 C 4 ASN B 101 ARG B 108 -1 O ILE B 104 N VAL B 24 SHEET 3 C 4 ARG B 74 VAL B 78 -1 N ALA B 76 O THR B 105 SHEET 4 C 4 VAL B 81 SER B 82 -1 O VAL B 81 N VAL B 78 SHEET 1 D 2 ILE B 36 SER B 39 0 SHEET 2 D 2 VAL B 55 VAL B 59 -1 O VAL B 55 N SER B 39 SHEET 1 E 3 GLY B 118 VAL B 120 0 SHEET 2 E 3 ILE D 36 SER D 39 -1 O ILE D 36 N VAL B 120 SHEET 3 E 3 VAL D 55 VAL D 59 -1 O VAL D 55 N SER D 39 SHEET 1 F 3 GLU C 20 HIS C 27 0 SHEET 2 F 3 ASN C 101 ARG C 108 -1 O ARG C 108 N GLU C 20 SHEET 3 F 3 ARG C 74 VAL C 78 -1 N ARG C 74 O ARG C 107 SHEET 1 G 2 ILE C 36 SER C 39 0 SHEET 2 G 2 VAL C 55 VAL C 59 -1 O VAL C 55 N SER C 39 SHEET 1 H 4 GLU D 20 HIS D 27 0 SHEET 2 H 4 ASN D 101 ARG D 108 -1 O ILE D 104 N VAL D 24 SHEET 3 H 4 ARG D 74 VAL D 78 -1 N ARG D 74 O ARG D 107 SHEET 4 H 4 VAL D 81 SER D 82 -1 O VAL D 81 N VAL D 78 SITE 1 AC1 7 MET A 77 VAL A 78 ASN A 79 GLY A 80 SITE 2 AC1 7 LYS A 103 ILE A 104 THR A 105 SITE 1 AC2 6 MET B 77 VAL B 78 ASN B 79 GLY B 80 SITE 2 AC2 6 LYS B 103 THR B 105 SITE 1 AC3 7 MET C 77 VAL C 78 ASN C 79 GLY C 80 SITE 2 AC3 7 LYS C 103 THR C 105 HOH C 372 SITE 1 AC4 7 MET D 77 VAL D 78 ASN D 79 GLY D 80 SITE 2 AC4 7 LYS D 103 THR D 105 HOH D 347 CRYST1 41.358 72.180 76.970 90.00 90.02 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024179 0.000000 0.000008 0.00000 SCALE2 0.000000 0.013854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012992 0.00000