HEADER CELL ADHESION 14-JAN-14 4OF6 TITLE CRYSTAL STRUCTURE OF SYG-1 D1, CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SYG-1, ISOFORM B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: D1, UNP RESIDUES 19-129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: CELE_K02E10.8, K02E10.8, SYG-1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS IMMUNOGLOBULIN SUPERFAMILY, CELL ADHESION, SYNAPTOGENESIS, PROTEIN KEYWDS 2 BINDING, N-LINKED GLYCOSYLATION, MEMBRANE, EXTRACELLULAR, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.OZKAN,K.C.GARCIA REVDAT 3 20-SEP-23 4OF6 1 HETSYN REVDAT 2 29-JUL-20 4OF6 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 19-FEB-14 4OF6 0 JRNL AUTH E.OZKAN,P.H.CHIA,R.R.WANG,N.GORIATCHEVA,D.BOREK, JRNL AUTH 2 Z.OTWINOWSKI,T.WALZ,K.SHEN,K.C.GARCIA JRNL TITL EXTRACELLULAR ARCHITECTURE OF THE SYG-1/SYG-2 ADHESION JRNL TITL 2 COMPLEX INSTRUCTS SYNAPTOGENESIS. JRNL REF CELL(CAMBRIDGE,MASS.) V. 156 482 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 24485456 JRNL DOI 10.1016/J.CELL.2014.01.004 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1160) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 30345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6406 - 3.7723 1.00 2829 160 0.1627 0.1827 REMARK 3 2 3.7723 - 2.9944 1.00 2694 132 0.1602 0.1733 REMARK 3 3 2.9944 - 2.6159 1.00 2637 153 0.1778 0.2334 REMARK 3 4 2.6159 - 2.3767 1.00 2650 128 0.1923 0.2477 REMARK 3 5 2.3767 - 2.2064 1.00 2632 126 0.1851 0.2012 REMARK 3 6 2.2064 - 2.0763 1.00 2599 143 0.1682 0.1987 REMARK 3 7 2.0763 - 1.9723 1.00 2598 140 0.1686 0.1968 REMARK 3 8 1.9723 - 1.8865 1.00 2603 135 0.1800 0.2365 REMARK 3 9 1.8865 - 1.8138 1.00 2574 153 0.1914 0.1978 REMARK 3 10 1.8138 - 1.7512 1.00 2596 141 0.2222 0.2972 REMARK 3 11 1.7512 - 1.6960 0.93 2399 123 0.2440 0.2865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1842 REMARK 3 ANGLE : 1.327 2494 REMARK 3 CHIRALITY : 0.100 292 REMARK 3 PLANARITY : 0.006 322 REMARK 3 DIHEDRAL : 20.577 720 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9577 36.6893 30.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.1141 REMARK 3 T33: 0.1811 T12: 0.0596 REMARK 3 T13: 0.0049 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 3.8730 L22: 2.0051 REMARK 3 L33: 2.8207 L12: 0.4834 REMARK 3 L13: -0.6655 L23: -1.1136 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: 0.0955 S13: 0.3415 REMARK 3 S21: -0.1035 S22: -0.1560 S23: 0.2815 REMARK 3 S31: -0.3201 S32: -0.1664 S33: -0.0182 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5042 24.2958 27.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.0939 REMARK 3 T33: 0.1104 T12: 0.0257 REMARK 3 T13: 0.0545 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.6947 L22: 1.4664 REMARK 3 L33: 1.6667 L12: -0.0123 REMARK 3 L13: -0.0148 L23: 0.2853 REMARK 3 S TENSOR REMARK 3 S11: -0.1083 S12: 0.0076 S13: -0.0671 REMARK 3 S21: -0.2981 S22: 0.0229 S23: -0.0698 REMARK 3 S31: -0.1212 S32: 0.0805 S33: 0.0496 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7502 23.9148 15.0812 REMARK 3 T TENSOR REMARK 3 T11: 0.5024 T22: 0.2249 REMARK 3 T33: 0.1587 T12: -0.0585 REMARK 3 T13: 0.0657 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 5.7295 L22: 4.4189 REMARK 3 L33: 5.1568 L12: -0.2793 REMARK 3 L13: -1.4194 L23: 0.8611 REMARK 3 S TENSOR REMARK 3 S11: -0.3483 S12: 0.5167 S13: -0.3156 REMARK 3 S21: -0.6273 S22: 0.1387 S23: 0.1572 REMARK 3 S31: -0.3074 S32: -0.6409 S33: 0.0895 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4863 18.1695 18.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.1637 REMARK 3 T33: 0.1737 T12: -0.0011 REMARK 3 T13: 0.1094 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 9.0184 L22: 5.1020 REMARK 3 L33: 1.8585 L12: -3.8509 REMARK 3 L13: -2.5613 L23: 3.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.4330 S12: 0.4294 S13: -0.6172 REMARK 3 S21: -0.2295 S22: 0.2212 S23: -0.1060 REMARK 3 S31: -0.3920 S32: -0.1424 S33: 0.1913 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9882 20.9926 25.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.1308 REMARK 3 T33: 0.1625 T12: 0.0202 REMARK 3 T13: 0.0896 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.6120 L22: 2.4331 REMARK 3 L33: 1.9139 L12: 0.2331 REMARK 3 L13: -0.0547 L23: 0.3182 REMARK 3 S TENSOR REMARK 3 S11: -0.1589 S12: 0.0023 S13: -0.1545 REMARK 3 S21: -0.4172 S22: -0.0110 S23: -0.0376 REMARK 3 S31: -0.0010 S32: -0.0001 S33: 0.1177 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4961 38.8649 27.2648 REMARK 3 T TENSOR REMARK 3 T11: 0.5630 T22: 0.1331 REMARK 3 T33: 0.1823 T12: -0.0301 REMARK 3 T13: 0.0024 T23: 0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.5596 L22: 1.7421 REMARK 3 L33: 3.5209 L12: -0.1922 REMARK 3 L13: 0.2054 L23: -2.3582 REMARK 3 S TENSOR REMARK 3 S11: -0.2904 S12: 0.0880 S13: 0.3800 REMARK 3 S21: 0.0047 S22: 0.0521 S23: -0.4116 REMARK 3 S31: -1.2282 S32: 0.2417 S33: 0.2219 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5017 9.3411 33.1352 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.0494 REMARK 3 T33: 0.4104 T12: 0.2161 REMARK 3 T13: 0.2225 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 1.0426 L22: 1.6748 REMARK 3 L33: 0.7079 L12: -0.7702 REMARK 3 L13: -0.5778 L23: 0.1745 REMARK 3 S TENSOR REMARK 3 S11: -0.3107 S12: -0.2223 S13: -0.7906 REMARK 3 S21: 0.0507 S22: -0.0018 S23: -0.1217 REMARK 3 S31: 0.5444 S32: 0.0834 S33: -0.1512 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.1419 43.1608 10.6793 REMARK 3 T TENSOR REMARK 3 T11: 0.4569 T22: 0.1897 REMARK 3 T33: 0.1760 T12: -0.0803 REMARK 3 T13: -0.0176 T23: -0.0564 REMARK 3 L TENSOR REMARK 3 L11: 1.7640 L22: 3.7649 REMARK 3 L33: 2.6919 L12: 0.0692 REMARK 3 L13: -0.0564 L23: 3.1751 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.5253 S13: 0.2727 REMARK 3 S21: 0.2535 S22: 0.0133 S23: 0.0512 REMARK 3 S31: -0.5592 S32: 0.1425 S33: 0.1348 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.4395 25.5077 7.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1139 REMARK 3 T33: 0.1368 T12: -0.0420 REMARK 3 T13: 0.0520 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.6039 L22: 2.6266 REMARK 3 L33: 1.4538 L12: 0.2292 REMARK 3 L13: 0.1261 L23: -0.2220 REMARK 3 S TENSOR REMARK 3 S11: -0.0605 S12: -0.0433 S13: -0.0673 REMARK 3 S21: 0.2897 S22: -0.0123 S23: -0.0043 REMARK 3 S31: -0.0631 S32: 0.0881 S33: 0.0692 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6765 26.1040 15.8565 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.1557 REMARK 3 T33: 0.1643 T12: -0.0133 REMARK 3 T13: 0.0948 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.6761 L22: 1.5462 REMARK 3 L33: 1.1474 L12: 0.5336 REMARK 3 L13: -1.0160 L23: -0.9291 REMARK 3 S TENSOR REMARK 3 S11: -0.1659 S12: -0.3363 S13: 0.0193 REMARK 3 S21: 0.5140 S22: -0.0396 S23: 0.1352 REMARK 3 S31: -0.3470 S32: 0.1179 S33: -0.0045 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.1923 18.5563 16.5238 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.1509 REMARK 3 T33: 0.1964 T12: -0.0277 REMARK 3 T13: 0.0872 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 4.6929 L22: 5.2649 REMARK 3 L33: 2.4118 L12: 2.2280 REMARK 3 L13: -0.8112 L23: -1.1819 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: -0.3157 S13: -0.3563 REMARK 3 S21: 0.5275 S22: -0.3635 S23: -0.1642 REMARK 3 S31: -0.1054 S32: 0.0293 S33: 0.2732 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6359 22.6566 10.0782 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1065 REMARK 3 T33: 0.2143 T12: -0.0290 REMARK 3 T13: 0.0747 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.5058 L22: 1.8702 REMARK 3 L33: 2.1048 L12: 0.0348 REMARK 3 L13: -0.0114 L23: -0.5423 REMARK 3 S TENSOR REMARK 3 S11: -0.2071 S12: -0.1372 S13: -0.2678 REMARK 3 S21: 0.3119 S22: 0.0103 S23: 0.0046 REMARK 3 S31: 0.0163 S32: -0.0213 S33: 0.0896 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2504 40.6736 10.5216 REMARK 3 T TENSOR REMARK 3 T11: 0.4079 T22: 0.1566 REMARK 3 T33: 0.1751 T12: -0.0212 REMARK 3 T13: 0.0343 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 0.7617 L22: 5.3397 REMARK 3 L33: 2.8199 L12: 1.4909 REMARK 3 L13: 1.1252 L23: 3.8746 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.2316 S13: 0.2779 REMARK 3 S21: 0.3431 S22: 0.0108 S23: 0.2352 REMARK 3 S31: -0.5128 S32: -0.0550 S33: 0.0364 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 120 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0934 9.2038 0.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.2669 T22: 0.1730 REMARK 3 T33: 0.5381 T12: -0.1346 REMARK 3 T13: 0.2252 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 2.8443 L22: 5.2555 REMARK 3 L33: 2.6822 L12: 1.6341 REMARK 3 L13: -1.0545 L23: 0.1951 REMARK 3 S TENSOR REMARK 3 S11: -0.4576 S12: 0.1450 S13: -1.2000 REMARK 3 S21: -0.1021 S22: -0.0218 S23: -0.3153 REMARK 3 S31: 0.8836 S32: 0.0145 S33: -0.0062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4OF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000084415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.696 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 32.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4OF0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2 M TRISODIUM CITRATE, 0.1 M HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.40450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.40450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.06450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.40450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.40450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.06450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.40450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.40450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.06450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.40450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.40450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.06450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1074 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1075 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1079 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1122 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 16 REMARK 465 ASP A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 THR A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 ALA B 16 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 110 O HOH A 1065 1.85 REMARK 500 O HOH B 1133 O HOH B 1134 1.86 REMARK 500 O HOH B 1040 O HOH B 1092 1.95 REMARK 500 OE1 GLU B 27 O HOH B 1084 2.12 REMARK 500 O HOH A 1063 O HOH A 1092 2.17 REMARK 500 O ARG B 127 O HOH B 1131 2.18 REMARK 500 O HOH A 1069 O HOH A 1118 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 38 -169.84 -107.90 REMARK 500 ASP A 110 -110.37 48.54 REMARK 500 LEU B 62 -157.23 -93.83 REMARK 500 PRO B 128 -7.34 -56.87 REMARK 500 HIS B 130 -178.45 -170.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4OF0 RELATED DB: PDB REMARK 900 RELATED ID: 4OF3 RELATED DB: PDB REMARK 900 RELATED ID: 4OF7 RELATED DB: PDB REMARK 900 RELATED ID: 4OF8 RELATED DB: PDB REMARK 900 RELATED ID: 4OFD RELATED DB: PDB REMARK 900 RELATED ID: 4OFI RELATED DB: PDB REMARK 900 RELATED ID: 4OFK RELATED DB: PDB REMARK 900 RELATED ID: 4OFP RELATED DB: PDB REMARK 900 RELATED ID: 4OFY RELATED DB: PDB DBREF 4OF6 A 19 129 UNP B1Q236 B1Q236_CAEEL 19 129 DBREF 4OF6 B 19 129 UNP B1Q236 B1Q236_CAEEL 19 129 SEQADV 4OF6 ALA A 16 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 ASP A 17 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 PRO A 18 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 130 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 131 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 132 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 133 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 134 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS A 135 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 ALA B 16 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 ASP B 17 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 PRO B 18 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 130 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 131 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 132 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 133 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 134 UNP B1Q236 EXPRESSION TAG SEQADV 4OF6 HIS B 135 UNP B1Q236 EXPRESSION TAG SEQRES 1 A 120 ALA ASP PRO GLN GLN LEU GLN GLN ARG ILE VAL GLU ALA SEQRES 2 A 120 PRO LYS ASP THR LEU ALA ALA VAL GLY GLU THR ALA ILE SEQRES 3 A 120 LEU THR CYS ARG VAL GLU HIS GLN GLN GLY PRO VAL GLN SEQRES 4 A 120 TRP MET LYS ASP ASP PHE GLY LEU GLY THR ASP ARG ASP SEQRES 5 A 120 LYS PRO LEU PRO GLY ASN LYS ARG TYR ARG MET VAL GLY SEQRES 6 A 120 SER ALA ALA ASN GLY GLU TYR ASN LEU GLU ILE SER ASN SEQRES 7 A 120 VAL THR LEU PHE ASP ASP ASP ASP PHE ALA CYS GLN ILE SEQRES 8 A 120 SER GLU SER ASP HIS ALA LYS ALA VAL VAL SER SER LYS SEQRES 9 A 120 ALA LYS LEU THR VAL LEU VAL ARG PRO THR HIS HIS HIS SEQRES 10 A 120 HIS HIS HIS SEQRES 1 B 120 ALA ASP PRO GLN GLN LEU GLN GLN ARG ILE VAL GLU ALA SEQRES 2 B 120 PRO LYS ASP THR LEU ALA ALA VAL GLY GLU THR ALA ILE SEQRES 3 B 120 LEU THR CYS ARG VAL GLU HIS GLN GLN GLY PRO VAL GLN SEQRES 4 B 120 TRP MET LYS ASP ASP PHE GLY LEU GLY THR ASP ARG ASP SEQRES 5 B 120 LYS PRO LEU PRO GLY ASN LYS ARG TYR ARG MET VAL GLY SEQRES 6 B 120 SER ALA ALA ASN GLY GLU TYR ASN LEU GLU ILE SER ASN SEQRES 7 B 120 VAL THR LEU PHE ASP ASP ASP ASP PHE ALA CYS GLN ILE SEQRES 8 B 120 SER GLU SER ASP HIS ALA LYS ALA VAL VAL SER SER LYS SEQRES 9 B 120 ALA LYS LEU THR VAL LEU VAL ARG PRO THR HIS HIS HIS SEQRES 10 B 120 HIS HIS HIS MODRES 4OF6 ASN A 93 ASN GLYCOSYLATION SITE MODRES 4OF6 ASN B 93 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET FUC C 2 10 HET NAG C 3 14 HET NAG D 1 14 HET FUC D 2 10 HET EDO A 904 4 HET EDO B 903 4 HET EDO B 904 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *273(H2 O) HELIX 1 1 SER A 81 GLY A 85 5 5 HELIX 2 2 THR A 95 ASP A 99 5 5 HELIX 3 3 ASP B 17 LEU B 21 5 5 HELIX 4 4 SER B 81 GLY B 85 5 5 HELIX 5 5 THR B 95 ASP B 99 5 5 SHEET 1 A 2 ARG A 24 GLU A 27 0 SHEET 2 A 2 ARG A 45 GLU A 47 -1 O ARG A 45 N VAL A 26 SHEET 1 B 5 THR A 32 ALA A 35 0 SHEET 2 B 5 ALA A 120 LEU A 125 1 O LEU A 125 N ALA A 34 SHEET 3 B 5 ASP A 100 ILE A 106 -1 N PHE A 102 O ALA A 120 SHEET 4 B 5 VAL A 53 LYS A 57 -1 N MET A 56 O ALA A 103 SHEET 5 B 5 PHE A 60 GLY A 61 -1 O PHE A 60 N LYS A 57 SHEET 1 C 4 THR A 32 ALA A 35 0 SHEET 2 C 4 ALA A 120 LEU A 125 1 O LEU A 125 N ALA A 34 SHEET 3 C 4 ASP A 100 ILE A 106 -1 N PHE A 102 O ALA A 120 SHEET 4 C 4 VAL A 115 VAL A 116 -1 O VAL A 115 N ILE A 106 SHEET 1 D 3 ALA A 40 LEU A 42 0 SHEET 2 D 3 ASN A 88 ILE A 91 -1 O ILE A 91 N ALA A 40 SHEET 3 D 3 TYR A 76 VAL A 79 -1 N ARG A 77 O GLU A 90 SHEET 1 E 2 ARG B 24 GLU B 27 0 SHEET 2 E 2 ARG B 45 GLU B 47 -1 O ARG B 45 N VAL B 26 SHEET 1 F 5 THR B 32 ALA B 35 0 SHEET 2 F 5 ALA B 120 LEU B 125 1 O LEU B 125 N ALA B 34 SHEET 3 F 5 ASP B 100 ILE B 106 -1 N PHE B 102 O ALA B 120 SHEET 4 F 5 VAL B 53 LYS B 57 -1 N MET B 56 O ALA B 103 SHEET 5 F 5 PHE B 60 GLY B 61 -1 O PHE B 60 N LYS B 57 SHEET 1 G 4 THR B 32 ALA B 35 0 SHEET 2 G 4 ALA B 120 LEU B 125 1 O LEU B 125 N ALA B 34 SHEET 3 G 4 ASP B 100 ILE B 106 -1 N PHE B 102 O ALA B 120 SHEET 4 G 4 VAL B 115 VAL B 116 -1 O VAL B 115 N ILE B 106 SHEET 1 H 3 ALA B 40 LEU B 42 0 SHEET 2 H 3 ASN B 88 ILE B 91 -1 O ILE B 91 N ALA B 40 SHEET 3 H 3 TYR B 76 VAL B 79 -1 N ARG B 77 O GLU B 90 SSBOND 1 CYS A 44 CYS A 104 1555 1555 2.01 SSBOND 2 CYS B 44 CYS B 104 1555 1555 1.99 LINK ND2 ASN A 93 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN B 93 C1 NAG D 1 1555 1555 1.45 LINK O3 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 3 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 2 1555 1555 1.44 CRYST1 84.809 84.809 74.129 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011791 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013490 0.00000