data_4OFD # _entry.id 4OFD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4OFD pdb_00004ofd 10.2210/pdb4ofd/pdb RCSB RCSB084422 ? ? WWPDB D_1000084422 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4OF0 . unspecified PDB 4OF3 . unspecified PDB 4OF6 . unspecified PDB 4OF7 . unspecified PDB 4OF8 . unspecified PDB 4OFI . unspecified PDB 4OFK . unspecified PDB 4OFP . unspecified PDB 4OFY . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4OFD _pdbx_database_status.recvd_initial_deposition_date 2014-01-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ozkan, E.' 1 'Garcia, K.C.' 2 # _citation.id primary _citation.title 'Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 156 _citation.page_first 482 _citation.page_last 494 _citation.year 2014 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24485456 _citation.pdbx_database_id_DOI 10.1016/j.cell.2014.01.004 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ozkan, E.' 1 ? primary 'Chia, P.H.' 2 ? primary 'Wang, R.R.' 3 ? primary 'Goriatcheva, N.' 4 ? primary 'Borek, D.' 5 ? primary 'Otwinowski, Z.' 6 ? primary 'Walz, T.' 7 ? primary 'Shen, K.' 8 ? primary 'Garcia, K.C.' 9 ? # _cell.entry_id 4OFD _cell.length_a 118.962 _cell.length_b 120.008 _cell.length_c 119.912 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4OFD _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Kin of IRRE-like protein 1' 23440.311 2 ? ? 'D1-D2, UNP residues 48-253' ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Kin of irregular chiasm-like protein 1, Nephrin-like protein 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ADPLPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAEL SDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTEL LKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;ADPLPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAEL SDDASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTEL LKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ASP n 1 3 PRO n 1 4 LEU n 1 5 PRO n 1 6 GLY n 1 7 THR n 1 8 GLN n 1 9 THR n 1 10 ARG n 1 11 PHE n 1 12 SER n 1 13 GLN n 1 14 GLU n 1 15 PRO n 1 16 ALA n 1 17 ASP n 1 18 GLN n 1 19 THR n 1 20 VAL n 1 21 VAL n 1 22 ALA n 1 23 GLY n 1 24 GLN n 1 25 ARG n 1 26 ALA n 1 27 VAL n 1 28 LEU n 1 29 PRO n 1 30 CYS n 1 31 VAL n 1 32 LEU n 1 33 LEU n 1 34 ASN n 1 35 TYR n 1 36 SER n 1 37 GLY n 1 38 ILE n 1 39 VAL n 1 40 GLN n 1 41 TRP n 1 42 THR n 1 43 LYS n 1 44 ASP n 1 45 GLY n 1 46 LEU n 1 47 ALA n 1 48 LEU n 1 49 GLY n 1 50 MET n 1 51 GLY n 1 52 GLN n 1 53 GLY n 1 54 LEU n 1 55 LYS n 1 56 ALA n 1 57 TRP n 1 58 PRO n 1 59 ARG n 1 60 TYR n 1 61 ARG n 1 62 VAL n 1 63 VAL n 1 64 GLY n 1 65 SER n 1 66 ALA n 1 67 ASP n 1 68 ALA n 1 69 GLY n 1 70 GLN n 1 71 TYR n 1 72 ASN n 1 73 LEU n 1 74 GLU n 1 75 ILE n 1 76 THR n 1 77 ASP n 1 78 ALA n 1 79 GLU n 1 80 LEU n 1 81 SER n 1 82 ASP n 1 83 ASP n 1 84 ALA n 1 85 SER n 1 86 TYR n 1 87 GLU n 1 88 CYS n 1 89 GLN n 1 90 ALA n 1 91 THR n 1 92 GLU n 1 93 ALA n 1 94 ALA n 1 95 LEU n 1 96 ARG n 1 97 SER n 1 98 ARG n 1 99 ARG n 1 100 ALA n 1 101 LYS n 1 102 LEU n 1 103 THR n 1 104 VAL n 1 105 LEU n 1 106 ILE n 1 107 PRO n 1 108 PRO n 1 109 GLU n 1 110 GLU n 1 111 THR n 1 112 ARG n 1 113 ILE n 1 114 ASP n 1 115 GLY n 1 116 GLY n 1 117 PRO n 1 118 VAL n 1 119 ILE n 1 120 LEU n 1 121 LEU n 1 122 GLN n 1 123 ALA n 1 124 GLY n 1 125 THR n 1 126 PRO n 1 127 TYR n 1 128 ASN n 1 129 LEU n 1 130 THR n 1 131 CYS n 1 132 ARG n 1 133 ALA n 1 134 PHE n 1 135 ASN n 1 136 ALA n 1 137 LYS n 1 138 PRO n 1 139 ALA n 1 140 ALA n 1 141 THR n 1 142 ILE n 1 143 ILE n 1 144 TRP n 1 145 PHE n 1 146 ARG n 1 147 ASP n 1 148 GLY n 1 149 THR n 1 150 GLN n 1 151 GLN n 1 152 GLU n 1 153 GLY n 1 154 ALA n 1 155 VAL n 1 156 THR n 1 157 SER n 1 158 THR n 1 159 GLU n 1 160 LEU n 1 161 LEU n 1 162 LYS n 1 163 ASP n 1 164 GLY n 1 165 LYS n 1 166 ARG n 1 167 GLU n 1 168 THR n 1 169 THR n 1 170 ILE n 1 171 SER n 1 172 GLN n 1 173 LEU n 1 174 LEU n 1 175 ILE n 1 176 GLU n 1 177 PRO n 1 178 THR n 1 179 ASP n 1 180 LEU n 1 181 ASP n 1 182 ILE n 1 183 GLY n 1 184 ARG n 1 185 VAL n 1 186 PHE n 1 187 THR n 1 188 CYS n 1 189 ARG n 1 190 SER n 1 191 MET n 1 192 ASN n 1 193 GLU n 1 194 ALA n 1 195 ILE n 1 196 PRO n 1 197 ASN n 1 198 GLY n 1 199 LYS n 1 200 GLU n 1 201 THR n 1 202 SER n 1 203 ILE n 1 204 GLU n 1 205 LEU n 1 206 ASP n 1 207 VAL n 1 208 HIS n 1 209 HIS n 1 210 HIS n 1 211 HIS n 1 212 HIS n 1 213 HIS n 1 214 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Kirrel, Kirrel1, Neph1, Neph1 (Kirrel)' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'High Five' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Baculovirus _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KIRR1_MOUSE _struct_ref.pdbx_db_accession Q80W68 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPGTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGLALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDD ASYECQATEAALRSRRAKLTVLIPPEETRIDGGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTSTELLKD GKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHH ; _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4OFD A 4 ? 209 ? Q80W68 48 ? 253 ? 20 225 2 1 4OFD B 4 ? 209 ? Q80W68 48 ? 253 ? 20 225 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4OFD ALA A 1 ? UNP Q80W68 ? ? 'expression tag' 17 1 1 4OFD ASP A 2 ? UNP Q80W68 ? ? 'expression tag' 18 2 1 4OFD PRO A 3 ? UNP Q80W68 ? ? 'expression tag' 19 3 1 4OFD HIS A 210 ? UNP Q80W68 ? ? 'expression tag' 226 4 1 4OFD HIS A 211 ? UNP Q80W68 ? ? 'expression tag' 227 5 1 4OFD HIS A 212 ? UNP Q80W68 ? ? 'expression tag' 228 6 1 4OFD HIS A 213 ? UNP Q80W68 ? ? 'expression tag' 229 7 1 4OFD HIS A 214 ? UNP Q80W68 ? ? 'expression tag' 230 8 2 4OFD ALA B 1 ? UNP Q80W68 ? ? 'expression tag' 17 9 2 4OFD ASP B 2 ? UNP Q80W68 ? ? 'expression tag' 18 10 2 4OFD PRO B 3 ? UNP Q80W68 ? ? 'expression tag' 19 11 2 4OFD HIS B 210 ? UNP Q80W68 ? ? 'expression tag' 226 12 2 4OFD HIS B 211 ? UNP Q80W68 ? ? 'expression tag' 227 13 2 4OFD HIS B 212 ? UNP Q80W68 ? ? 'expression tag' 228 14 2 4OFD HIS B 213 ? UNP Q80W68 ? ? 'expression tag' 229 15 2 4OFD HIS B 214 ? UNP Q80W68 ? ? 'expression tag' 230 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4OFD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.56 _exptl_crystal.density_percent_sol 73.05 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15% PEG 3,350, 3% Dextran sulfate, 0.1 M Sodium citrate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.0K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-08-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si (111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4OFD _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 3.94 _reflns.number_obs 7856 _reflns.number_all 7877 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.092 _reflns.pdbx_netI_over_sigmaI 18.9 _reflns.B_iso_Wilson_estimate 156.42 _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4OFD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7856 _refine.ls_number_reflns_all 7895 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 48.895 _refine.ls_d_res_high 3.94 _refine.ls_percent_reflns_obs 99.51 _refine.ls_R_factor_obs 0.2986 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2971 _refine.ls_R_factor_R_free 0.3291 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.63 _refine.ls_number_reflns_R_free 364 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB Entries 4OF0, 4OF8' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.56 _refine.pdbx_overall_phase_error 44.54 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2940 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3007 _refine_hist.d_res_high 3.94 _refine_hist.d_res_low 48.895 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 3059 'X-RAY DIFFRACTION' ? f_angle_d 0.860 ? ? 4162 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.467 ? ? 1126 'X-RAY DIFFRACTION' ? f_chiral_restr 0.032 ? ? 504 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 537 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 3.94 4.5046 2428 0.3215 99.00 0.3298 . . 115 . . . . 'X-RAY DIFFRACTION' . 4.5046 5.6739 2492 0.3282 100.00 0.3531 . . 119 . . . . 'X-RAY DIFFRACTION' . 5.6739 48.8988 2572 0.2770 100.00 0.3187 . . 130 . . . . # _struct_ncs_dom.id 1 _struct_ncs_dom.details ? _struct_ncs_dom.pdbx_ens_id 1 # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 4OFD _struct.title 'Crystal Structure of mouse Neph1 D1-D2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4OFD _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;Immunoglobulin superfamily, Cell adhesion, Kidney, Blood filtration, Protein Binding, N-linked Glycosylation, SIGNALING PROTEIN, Membrane, Extracellular ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 79 ? ASP A 83 ? GLU A 95 ASP A 99 5 ? 5 HELX_P HELX_P2 2 GLU B 79 ? ASP B 83 ? GLU B 95 ASP B 99 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 46 A CYS 104 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 131 SG ? ? ? 1_555 A CYS 188 SG ? ? A CYS 147 A CYS 204 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? B CYS 30 SG ? ? ? 1_555 B CYS 88 SG ? ? B CYS 46 B CYS 104 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? B CYS 131 SG ? ? ? 1_555 B CYS 188 SG ? ? B CYS 147 B CYS 204 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale one ? A ASN 128 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 144 C NAG 1 1_555 ? ? ? ? ? ? ? 1.434 ? N-Glycosylation covale2 covale one ? B ASN 128 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 144 D NAG 1 1_555 ? ? ? ? ? ? ? 1.438 ? N-Glycosylation covale3 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale4 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale5 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.446 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 137 A . ? LYS 153 A PRO 138 A ? PRO 154 A 1 -1.46 2 LYS 137 B . ? LYS 153 B PRO 138 B ? PRO 154 B 1 0.39 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 4 ? E ? 4 ? F ? 3 ? G ? 4 ? H ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? parallel H 2 3 ? anti-parallel H 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 18 ? VAL A 21 ? GLN A 34 VAL A 37 A 2 ALA A 100 ? LEU A 105 ? ALA A 116 LEU A 121 A 3 SER A 85 ? GLU A 87 ? SER A 101 GLU A 103 A 4 THR A 42 ? LYS A 43 ? THR A 58 LYS A 59 B 1 ALA A 26 ? LEU A 28 ? ALA A 42 LEU A 44 B 2 ASN A 72 ? ILE A 75 ? ASN A 88 ILE A 91 B 3 TYR A 60 ? VAL A 63 ? TYR A 76 VAL A 79 C 1 ARG A 112 ? ILE A 113 ? ARG A 128 ILE A 129 C 2 LEU A 129 ? ARG A 132 ? LEU A 145 ARG A 148 C 3 ILE A 170 ? LEU A 173 ? ILE A 186 LEU A 189 C 4 VAL A 155 ? SER A 157 ? VAL A 171 SER A 173 D 1 VAL A 118 ? ILE A 119 ? VAL A 134 ILE A 135 D 2 ILE A 195 ? LEU A 205 ? ILE A 211 LEU A 221 D 3 VAL A 185 ? ASN A 192 ? VAL A 201 ASN A 208 D 4 THR A 141 ? PHE A 145 ? THR A 157 PHE A 161 E 1 GLN B 18 ? VAL B 21 ? GLN B 34 VAL B 37 E 2 ALA B 100 ? LEU B 105 ? ALA B 116 LEU B 121 E 3 SER B 85 ? GLU B 87 ? SER B 101 GLU B 103 E 4 THR B 42 ? LYS B 43 ? THR B 58 LYS B 59 F 1 ALA B 26 ? LEU B 28 ? ALA B 42 LEU B 44 F 2 ASN B 72 ? ILE B 75 ? ASN B 88 ILE B 91 F 3 TYR B 60 ? VAL B 63 ? TYR B 76 VAL B 79 G 1 ARG B 112 ? ILE B 113 ? ARG B 128 ILE B 129 G 2 LEU B 129 ? ARG B 132 ? LEU B 145 ARG B 148 G 3 ILE B 170 ? LEU B 173 ? ILE B 186 LEU B 189 G 4 VAL B 155 ? SER B 157 ? VAL B 171 SER B 173 H 1 VAL B 118 ? LEU B 120 ? VAL B 134 LEU B 136 H 2 ILE B 195 ? ASP B 206 ? ILE B 211 ASP B 222 H 3 VAL B 185 ? ASN B 192 ? VAL B 201 ASN B 208 H 4 THR B 141 ? PHE B 145 ? THR B 157 PHE B 161 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 18 ? N GLN A 34 O THR A 103 ? O THR A 119 A 2 3 O ALA A 100 ? O ALA A 116 N TYR A 86 ? N TYR A 102 A 3 4 O GLU A 87 ? O GLU A 103 N THR A 42 ? N THR A 58 B 1 2 N ALA A 26 ? N ALA A 42 O ILE A 75 ? O ILE A 91 B 2 3 O ASN A 72 ? O ASN A 88 N VAL A 63 ? N VAL A 79 C 1 2 N ARG A 112 ? N ARG A 128 O ARG A 132 ? O ARG A 148 C 2 3 N LEU A 129 ? N LEU A 145 O LEU A 173 ? O LEU A 189 C 3 4 O ILE A 170 ? O ILE A 186 N SER A 157 ? N SER A 173 D 1 2 N ILE A 119 ? N ILE A 135 O GLU A 204 ? O GLU A 220 D 2 3 O ILE A 203 ? O ILE A 219 N PHE A 186 ? N PHE A 202 D 3 4 O ARG A 189 ? O ARG A 205 N ILE A 143 ? N ILE A 159 E 1 2 N VAL B 20 ? N VAL B 36 O LEU B 105 ? O LEU B 121 E 2 3 O ALA B 100 ? O ALA B 116 N TYR B 86 ? N TYR B 102 E 3 4 O GLU B 87 ? O GLU B 103 N THR B 42 ? N THR B 58 F 1 2 N ALA B 26 ? N ALA B 42 O ILE B 75 ? O ILE B 91 F 2 3 O ASN B 72 ? O ASN B 88 N VAL B 63 ? N VAL B 79 G 1 2 N ARG B 112 ? N ARG B 128 O ARG B 132 ? O ARG B 148 G 2 3 N LEU B 129 ? N LEU B 145 O LEU B 173 ? O LEU B 189 G 3 4 O ILE B 170 ? O ILE B 186 N SER B 157 ? N SER B 173 H 1 2 N ILE B 119 ? N ILE B 135 O GLU B 204 ? O GLU B 220 H 2 3 O ILE B 203 ? O ILE B 219 N PHE B 186 ? N PHE B 202 H 3 4 O MET B 191 ? O MET B 207 N THR B 141 ? N THR B 157 # _database_PDB_matrix.entry_id 4OFD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4OFD _atom_sites.fract_transf_matrix[1][1] 0.008406 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008333 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008339 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 17 ? ? ? A . n A 1 2 ASP 2 18 ? ? ? A . n A 1 3 PRO 3 19 ? ? ? A . n A 1 4 LEU 4 20 ? ? ? A . n A 1 5 PRO 5 21 ? ? ? A . n A 1 6 GLY 6 22 ? ? ? A . n A 1 7 THR 7 23 ? ? ? A . n A 1 8 GLN 8 24 24 GLN GLN A . n A 1 9 THR 9 25 25 THR THR A . n A 1 10 ARG 10 26 26 ARG ARG A . n A 1 11 PHE 11 27 27 PHE PHE A . n A 1 12 SER 12 28 28 SER SER A . n A 1 13 GLN 13 29 29 GLN GLN A . n A 1 14 GLU 14 30 30 GLU GLU A . n A 1 15 PRO 15 31 31 PRO PRO A . n A 1 16 ALA 16 32 32 ALA ALA A . n A 1 17 ASP 17 33 33 ASP ASP A . n A 1 18 GLN 18 34 34 GLN GLN A . n A 1 19 THR 19 35 35 THR THR A . n A 1 20 VAL 20 36 36 VAL VAL A . n A 1 21 VAL 21 37 37 VAL VAL A . n A 1 22 ALA 22 38 38 ALA ALA A . n A 1 23 GLY 23 39 39 GLY GLY A . n A 1 24 GLN 24 40 40 GLN GLN A . n A 1 25 ARG 25 41 41 ARG ARG A . n A 1 26 ALA 26 42 42 ALA ALA A . n A 1 27 VAL 27 43 43 VAL VAL A . n A 1 28 LEU 28 44 44 LEU LEU A . n A 1 29 PRO 29 45 45 PRO PRO A . n A 1 30 CYS 30 46 46 CYS CYS A . n A 1 31 VAL 31 47 47 VAL VAL A . n A 1 32 LEU 32 48 48 LEU LEU A . n A 1 33 LEU 33 49 49 LEU LEU A . n A 1 34 ASN 34 50 50 ASN ASN A . n A 1 35 TYR 35 51 51 TYR TYR A . n A 1 36 SER 36 52 52 SER SER A . n A 1 37 GLY 37 53 53 GLY GLY A . n A 1 38 ILE 38 54 54 ILE ILE A . n A 1 39 VAL 39 55 55 VAL VAL A . n A 1 40 GLN 40 56 56 GLN GLN A . n A 1 41 TRP 41 57 57 TRP TRP A . n A 1 42 THR 42 58 58 THR THR A . n A 1 43 LYS 43 59 59 LYS LYS A . n A 1 44 ASP 44 60 60 ASP ASP A . n A 1 45 GLY 45 61 61 GLY GLY A . n A 1 46 LEU 46 62 62 LEU LEU A . n A 1 47 ALA 47 63 63 ALA ALA A . n A 1 48 LEU 48 64 64 LEU LEU A . n A 1 49 GLY 49 65 ? ? ? A . n A 1 50 MET 50 66 ? ? ? A . n A 1 51 GLY 51 67 ? ? ? A . n A 1 52 GLN 52 68 ? ? ? A . n A 1 53 GLY 53 69 69 GLY GLY A . n A 1 54 LEU 54 70 70 LEU LEU A . n A 1 55 LYS 55 71 71 LYS LYS A . n A 1 56 ALA 56 72 72 ALA ALA A . n A 1 57 TRP 57 73 73 TRP TRP A . n A 1 58 PRO 58 74 74 PRO PRO A . n A 1 59 ARG 59 75 75 ARG ARG A . n A 1 60 TYR 60 76 76 TYR TYR A . n A 1 61 ARG 61 77 77 ARG ARG A . n A 1 62 VAL 62 78 78 VAL VAL A . n A 1 63 VAL 63 79 79 VAL VAL A . n A 1 64 GLY 64 80 80 GLY GLY A . n A 1 65 SER 65 81 81 SER SER A . n A 1 66 ALA 66 82 82 ALA ALA A . n A 1 67 ASP 67 83 83 ASP ASP A . n A 1 68 ALA 68 84 84 ALA ALA A . n A 1 69 GLY 69 85 85 GLY GLY A . n A 1 70 GLN 70 86 86 GLN GLN A . n A 1 71 TYR 71 87 87 TYR TYR A . n A 1 72 ASN 72 88 88 ASN ASN A . n A 1 73 LEU 73 89 89 LEU LEU A . n A 1 74 GLU 74 90 90 GLU GLU A . n A 1 75 ILE 75 91 91 ILE ILE A . n A 1 76 THR 76 92 92 THR THR A . n A 1 77 ASP 77 93 93 ASP ASP A . n A 1 78 ALA 78 94 94 ALA ALA A . n A 1 79 GLU 79 95 95 GLU GLU A . n A 1 80 LEU 80 96 96 LEU LEU A . n A 1 81 SER 81 97 97 SER SER A . n A 1 82 ASP 82 98 98 ASP ASP A . n A 1 83 ASP 83 99 99 ASP ASP A . n A 1 84 ALA 84 100 100 ALA ALA A . n A 1 85 SER 85 101 101 SER SER A . n A 1 86 TYR 86 102 102 TYR TYR A . n A 1 87 GLU 87 103 103 GLU GLU A . n A 1 88 CYS 88 104 104 CYS CYS A . n A 1 89 GLN 89 105 105 GLN GLN A . n A 1 90 ALA 90 106 106 ALA ALA A . n A 1 91 THR 91 107 107 THR THR A . n A 1 92 GLU 92 108 108 GLU GLU A . n A 1 93 ALA 93 109 109 ALA ALA A . n A 1 94 ALA 94 110 110 ALA ALA A . n A 1 95 LEU 95 111 111 LEU LEU A . n A 1 96 ARG 96 112 112 ARG ARG A . n A 1 97 SER 97 113 113 SER SER A . n A 1 98 ARG 98 114 114 ARG ARG A . n A 1 99 ARG 99 115 115 ARG ARG A . n A 1 100 ALA 100 116 116 ALA ALA A . n A 1 101 LYS 101 117 117 LYS LYS A . n A 1 102 LEU 102 118 118 LEU LEU A . n A 1 103 THR 103 119 119 THR THR A . n A 1 104 VAL 104 120 120 VAL VAL A . n A 1 105 LEU 105 121 121 LEU LEU A . n A 1 106 ILE 106 122 122 ILE ILE A . n A 1 107 PRO 107 123 123 PRO PRO A . n A 1 108 PRO 108 124 124 PRO PRO A . n A 1 109 GLU 109 125 125 GLU GLU A . n A 1 110 GLU 110 126 126 GLU GLU A . n A 1 111 THR 111 127 127 THR THR A . n A 1 112 ARG 112 128 128 ARG ARG A . n A 1 113 ILE 113 129 129 ILE ILE A . n A 1 114 ASP 114 130 130 ASP ASP A . n A 1 115 GLY 115 131 131 GLY GLY A . n A 1 116 GLY 116 132 132 GLY GLY A . n A 1 117 PRO 117 133 133 PRO PRO A . n A 1 118 VAL 118 134 134 VAL VAL A . n A 1 119 ILE 119 135 135 ILE ILE A . n A 1 120 LEU 120 136 136 LEU LEU A . n A 1 121 LEU 121 137 137 LEU LEU A . n A 1 122 GLN 122 138 ? ? ? A . n A 1 123 ALA 123 139 ? ? ? A . n A 1 124 GLY 124 140 ? ? ? A . n A 1 125 THR 125 141 ? ? ? A . n A 1 126 PRO 126 142 142 PRO PRO A . n A 1 127 TYR 127 143 143 TYR TYR A . n A 1 128 ASN 128 144 144 ASN ASN A . n A 1 129 LEU 129 145 145 LEU LEU A . n A 1 130 THR 130 146 146 THR THR A . n A 1 131 CYS 131 147 147 CYS CYS A . n A 1 132 ARG 132 148 148 ARG ARG A . n A 1 133 ALA 133 149 149 ALA ALA A . n A 1 134 PHE 134 150 150 PHE PHE A . n A 1 135 ASN 135 151 151 ASN ASN A . n A 1 136 ALA 136 152 152 ALA ALA A . n A 1 137 LYS 137 153 153 LYS LYS A . n A 1 138 PRO 138 154 154 PRO PRO A . n A 1 139 ALA 139 155 155 ALA ALA A . n A 1 140 ALA 140 156 156 ALA ALA A . n A 1 141 THR 141 157 157 THR THR A . n A 1 142 ILE 142 158 158 ILE ILE A . n A 1 143 ILE 143 159 159 ILE ILE A . n A 1 144 TRP 144 160 160 TRP TRP A . n A 1 145 PHE 145 161 161 PHE PHE A . n A 1 146 ARG 146 162 162 ARG ARG A . n A 1 147 ASP 147 163 163 ASP ASP A . n A 1 148 GLY 148 164 164 GLY GLY A . n A 1 149 THR 149 165 165 THR THR A . n A 1 150 GLN 150 166 166 GLN GLN A . n A 1 151 GLN 151 167 167 GLN GLN A . n A 1 152 GLU 152 168 168 GLU GLU A . n A 1 153 GLY 153 169 169 GLY GLY A . n A 1 154 ALA 154 170 170 ALA ALA A . n A 1 155 VAL 155 171 171 VAL VAL A . n A 1 156 THR 156 172 172 THR THR A . n A 1 157 SER 157 173 173 SER SER A . n A 1 158 THR 158 174 174 THR THR A . n A 1 159 GLU 159 175 175 GLU GLU A . n A 1 160 LEU 160 176 176 LEU LEU A . n A 1 161 LEU 161 177 177 LEU LEU A . n A 1 162 LYS 162 178 178 LYS LYS A . n A 1 163 ASP 163 179 179 ASP ASP A . n A 1 164 GLY 164 180 180 GLY GLY A . n A 1 165 LYS 165 181 181 LYS LYS A . n A 1 166 ARG 166 182 182 ARG ARG A . n A 1 167 GLU 167 183 183 GLU GLU A . n A 1 168 THR 168 184 184 THR THR A . n A 1 169 THR 169 185 185 THR THR A . n A 1 170 ILE 170 186 186 ILE ILE A . n A 1 171 SER 171 187 187 SER SER A . n A 1 172 GLN 172 188 188 GLN GLN A . n A 1 173 LEU 173 189 189 LEU LEU A . n A 1 174 LEU 174 190 190 LEU LEU A . n A 1 175 ILE 175 191 191 ILE ILE A . n A 1 176 GLU 176 192 192 GLU GLU A . n A 1 177 PRO 177 193 193 PRO PRO A . n A 1 178 THR 178 194 194 THR THR A . n A 1 179 ASP 179 195 195 ASP ASP A . n A 1 180 LEU 180 196 196 LEU LEU A . n A 1 181 ASP 181 197 197 ASP ASP A . n A 1 182 ILE 182 198 198 ILE ILE A . n A 1 183 GLY 183 199 199 GLY GLY A . n A 1 184 ARG 184 200 200 ARG ARG A . n A 1 185 VAL 185 201 201 VAL VAL A . n A 1 186 PHE 186 202 202 PHE PHE A . n A 1 187 THR 187 203 203 THR THR A . n A 1 188 CYS 188 204 204 CYS CYS A . n A 1 189 ARG 189 205 205 ARG ARG A . n A 1 190 SER 190 206 206 SER SER A . n A 1 191 MET 191 207 207 MET MET A . n A 1 192 ASN 192 208 208 ASN ASN A . n A 1 193 GLU 193 209 209 GLU GLU A . n A 1 194 ALA 194 210 210 ALA ALA A . n A 1 195 ILE 195 211 211 ILE ILE A . n A 1 196 PRO 196 212 212 PRO PRO A . n A 1 197 ASN 197 213 213 ASN ASN A . n A 1 198 GLY 198 214 214 GLY GLY A . n A 1 199 LYS 199 215 215 LYS LYS A . n A 1 200 GLU 200 216 216 GLU GLU A . n A 1 201 THR 201 217 217 THR THR A . n A 1 202 SER 202 218 218 SER SER A . n A 1 203 ILE 203 219 219 ILE ILE A . n A 1 204 GLU 204 220 220 GLU GLU A . n A 1 205 LEU 205 221 221 LEU LEU A . n A 1 206 ASP 206 222 222 ASP ASP A . n A 1 207 VAL 207 223 ? ? ? A . n A 1 208 HIS 208 224 ? ? ? A . n A 1 209 HIS 209 225 ? ? ? A . n A 1 210 HIS 210 226 ? ? ? A . n A 1 211 HIS 211 227 ? ? ? A . n A 1 212 HIS 212 228 ? ? ? A . n A 1 213 HIS 213 229 ? ? ? A . n A 1 214 HIS 214 230 ? ? ? A . n B 1 1 ALA 1 17 ? ? ? B . n B 1 2 ASP 2 18 ? ? ? B . n B 1 3 PRO 3 19 ? ? ? B . n B 1 4 LEU 4 20 ? ? ? B . n B 1 5 PRO 5 21 ? ? ? B . n B 1 6 GLY 6 22 ? ? ? B . n B 1 7 THR 7 23 23 THR THR B . n B 1 8 GLN 8 24 24 GLN GLN B . n B 1 9 THR 9 25 25 THR THR B . n B 1 10 ARG 10 26 26 ARG ARG B . n B 1 11 PHE 11 27 27 PHE PHE B . n B 1 12 SER 12 28 28 SER SER B . n B 1 13 GLN 13 29 29 GLN GLN B . n B 1 14 GLU 14 30 30 GLU GLU B . n B 1 15 PRO 15 31 31 PRO PRO B . n B 1 16 ALA 16 32 32 ALA ALA B . n B 1 17 ASP 17 33 33 ASP ASP B . n B 1 18 GLN 18 34 34 GLN GLN B . n B 1 19 THR 19 35 35 THR THR B . n B 1 20 VAL 20 36 36 VAL VAL B . n B 1 21 VAL 21 37 37 VAL VAL B . n B 1 22 ALA 22 38 38 ALA ALA B . n B 1 23 GLY 23 39 39 GLY GLY B . n B 1 24 GLN 24 40 40 GLN GLN B . n B 1 25 ARG 25 41 41 ARG ARG B . n B 1 26 ALA 26 42 42 ALA ALA B . n B 1 27 VAL 27 43 43 VAL VAL B . n B 1 28 LEU 28 44 44 LEU LEU B . n B 1 29 PRO 29 45 45 PRO PRO B . n B 1 30 CYS 30 46 46 CYS CYS B . n B 1 31 VAL 31 47 47 VAL VAL B . n B 1 32 LEU 32 48 48 LEU LEU B . n B 1 33 LEU 33 49 49 LEU LEU B . n B 1 34 ASN 34 50 50 ASN ASN B . n B 1 35 TYR 35 51 51 TYR TYR B . n B 1 36 SER 36 52 52 SER SER B . n B 1 37 GLY 37 53 53 GLY GLY B . n B 1 38 ILE 38 54 54 ILE ILE B . n B 1 39 VAL 39 55 55 VAL VAL B . n B 1 40 GLN 40 56 56 GLN GLN B . n B 1 41 TRP 41 57 57 TRP TRP B . n B 1 42 THR 42 58 58 THR THR B . n B 1 43 LYS 43 59 59 LYS LYS B . n B 1 44 ASP 44 60 60 ASP ASP B . n B 1 45 GLY 45 61 61 GLY GLY B . n B 1 46 LEU 46 62 62 LEU LEU B . n B 1 47 ALA 47 63 63 ALA ALA B . n B 1 48 LEU 48 64 64 LEU LEU B . n B 1 49 GLY 49 65 65 GLY GLY B . n B 1 50 MET 50 66 66 MET MET B . n B 1 51 GLY 51 67 67 GLY GLY B . n B 1 52 GLN 52 68 68 GLN GLN B . n B 1 53 GLY 53 69 69 GLY GLY B . n B 1 54 LEU 54 70 70 LEU LEU B . n B 1 55 LYS 55 71 71 LYS LYS B . n B 1 56 ALA 56 72 72 ALA ALA B . n B 1 57 TRP 57 73 73 TRP TRP B . n B 1 58 PRO 58 74 74 PRO PRO B . n B 1 59 ARG 59 75 75 ARG ARG B . n B 1 60 TYR 60 76 76 TYR TYR B . n B 1 61 ARG 61 77 77 ARG ARG B . n B 1 62 VAL 62 78 78 VAL VAL B . n B 1 63 VAL 63 79 79 VAL VAL B . n B 1 64 GLY 64 80 80 GLY GLY B . n B 1 65 SER 65 81 81 SER SER B . n B 1 66 ALA 66 82 82 ALA ALA B . n B 1 67 ASP 67 83 83 ASP ASP B . n B 1 68 ALA 68 84 84 ALA ALA B . n B 1 69 GLY 69 85 85 GLY GLY B . n B 1 70 GLN 70 86 86 GLN GLN B . n B 1 71 TYR 71 87 87 TYR TYR B . n B 1 72 ASN 72 88 88 ASN ASN B . n B 1 73 LEU 73 89 89 LEU LEU B . n B 1 74 GLU 74 90 90 GLU GLU B . n B 1 75 ILE 75 91 91 ILE ILE B . n B 1 76 THR 76 92 92 THR THR B . n B 1 77 ASP 77 93 93 ASP ASP B . n B 1 78 ALA 78 94 94 ALA ALA B . n B 1 79 GLU 79 95 95 GLU GLU B . n B 1 80 LEU 80 96 96 LEU LEU B . n B 1 81 SER 81 97 97 SER SER B . n B 1 82 ASP 82 98 98 ASP ASP B . n B 1 83 ASP 83 99 99 ASP ASP B . n B 1 84 ALA 84 100 100 ALA ALA B . n B 1 85 SER 85 101 101 SER SER B . n B 1 86 TYR 86 102 102 TYR TYR B . n B 1 87 GLU 87 103 103 GLU GLU B . n B 1 88 CYS 88 104 104 CYS CYS B . n B 1 89 GLN 89 105 105 GLN GLN B . n B 1 90 ALA 90 106 106 ALA ALA B . n B 1 91 THR 91 107 107 THR THR B . n B 1 92 GLU 92 108 108 GLU GLU B . n B 1 93 ALA 93 109 109 ALA ALA B . n B 1 94 ALA 94 110 110 ALA ALA B . n B 1 95 LEU 95 111 111 LEU LEU B . n B 1 96 ARG 96 112 112 ARG ARG B . n B 1 97 SER 97 113 113 SER SER B . n B 1 98 ARG 98 114 114 ARG ARG B . n B 1 99 ARG 99 115 115 ARG ARG B . n B 1 100 ALA 100 116 116 ALA ALA B . n B 1 101 LYS 101 117 117 LYS LYS B . n B 1 102 LEU 102 118 118 LEU LEU B . n B 1 103 THR 103 119 119 THR THR B . n B 1 104 VAL 104 120 120 VAL VAL B . n B 1 105 LEU 105 121 121 LEU LEU B . n B 1 106 ILE 106 122 122 ILE ILE B . n B 1 107 PRO 107 123 123 PRO PRO B . n B 1 108 PRO 108 124 124 PRO PRO B . n B 1 109 GLU 109 125 125 GLU GLU B . n B 1 110 GLU 110 126 126 GLU GLU B . n B 1 111 THR 111 127 127 THR THR B . n B 1 112 ARG 112 128 128 ARG ARG B . n B 1 113 ILE 113 129 129 ILE ILE B . n B 1 114 ASP 114 130 130 ASP ASP B . n B 1 115 GLY 115 131 131 GLY GLY B . n B 1 116 GLY 116 132 132 GLY GLY B . n B 1 117 PRO 117 133 133 PRO PRO B . n B 1 118 VAL 118 134 134 VAL VAL B . n B 1 119 ILE 119 135 135 ILE ILE B . n B 1 120 LEU 120 136 136 LEU LEU B . n B 1 121 LEU 121 137 137 LEU LEU B . n B 1 122 GLN 122 138 ? ? ? B . n B 1 123 ALA 123 139 ? ? ? B . n B 1 124 GLY 124 140 ? ? ? B . n B 1 125 THR 125 141 ? ? ? B . n B 1 126 PRO 126 142 142 PRO PRO B . n B 1 127 TYR 127 143 143 TYR TYR B . n B 1 128 ASN 128 144 144 ASN ASN B . n B 1 129 LEU 129 145 145 LEU LEU B . n B 1 130 THR 130 146 146 THR THR B . n B 1 131 CYS 131 147 147 CYS CYS B . n B 1 132 ARG 132 148 148 ARG ARG B . n B 1 133 ALA 133 149 149 ALA ALA B . n B 1 134 PHE 134 150 150 PHE PHE B . n B 1 135 ASN 135 151 151 ASN ASN B . n B 1 136 ALA 136 152 152 ALA ALA B . n B 1 137 LYS 137 153 153 LYS LYS B . n B 1 138 PRO 138 154 154 PRO PRO B . n B 1 139 ALA 139 155 155 ALA ALA B . n B 1 140 ALA 140 156 156 ALA ALA B . n B 1 141 THR 141 157 157 THR THR B . n B 1 142 ILE 142 158 158 ILE ILE B . n B 1 143 ILE 143 159 159 ILE ILE B . n B 1 144 TRP 144 160 160 TRP TRP B . n B 1 145 PHE 145 161 161 PHE PHE B . n B 1 146 ARG 146 162 162 ARG ARG B . n B 1 147 ASP 147 163 163 ASP ASP B . n B 1 148 GLY 148 164 164 GLY GLY B . n B 1 149 THR 149 165 165 THR THR B . n B 1 150 GLN 150 166 166 GLN GLN B . n B 1 151 GLN 151 167 167 GLN GLN B . n B 1 152 GLU 152 168 168 GLU GLU B . n B 1 153 GLY 153 169 169 GLY GLY B . n B 1 154 ALA 154 170 170 ALA ALA B . n B 1 155 VAL 155 171 171 VAL VAL B . n B 1 156 THR 156 172 172 THR THR B . n B 1 157 SER 157 173 173 SER SER B . n B 1 158 THR 158 174 174 THR THR B . n B 1 159 GLU 159 175 175 GLU GLU B . n B 1 160 LEU 160 176 176 LEU LEU B . n B 1 161 LEU 161 177 177 LEU LEU B . n B 1 162 LYS 162 178 178 LYS LYS B . n B 1 163 ASP 163 179 179 ASP ASP B . n B 1 164 GLY 164 180 180 GLY GLY B . n B 1 165 LYS 165 181 181 LYS LYS B . n B 1 166 ARG 166 182 182 ARG ARG B . n B 1 167 GLU 167 183 183 GLU GLU B . n B 1 168 THR 168 184 184 THR THR B . n B 1 169 THR 169 185 185 THR THR B . n B 1 170 ILE 170 186 186 ILE ILE B . n B 1 171 SER 171 187 187 SER SER B . n B 1 172 GLN 172 188 188 GLN GLN B . n B 1 173 LEU 173 189 189 LEU LEU B . n B 1 174 LEU 174 190 190 LEU LEU B . n B 1 175 ILE 175 191 191 ILE ILE B . n B 1 176 GLU 176 192 192 GLU GLU B . n B 1 177 PRO 177 193 193 PRO PRO B . n B 1 178 THR 178 194 194 THR THR B . n B 1 179 ASP 179 195 195 ASP ASP B . n B 1 180 LEU 180 196 196 LEU LEU B . n B 1 181 ASP 181 197 197 ASP ASP B . n B 1 182 ILE 182 198 198 ILE ILE B . n B 1 183 GLY 183 199 199 GLY GLY B . n B 1 184 ARG 184 200 200 ARG ARG B . n B 1 185 VAL 185 201 201 VAL VAL B . n B 1 186 PHE 186 202 202 PHE PHE B . n B 1 187 THR 187 203 203 THR THR B . n B 1 188 CYS 188 204 204 CYS CYS B . n B 1 189 ARG 189 205 205 ARG ARG B . n B 1 190 SER 190 206 206 SER SER B . n B 1 191 MET 191 207 207 MET MET B . n B 1 192 ASN 192 208 208 ASN ASN B . n B 1 193 GLU 193 209 209 GLU GLU B . n B 1 194 ALA 194 210 210 ALA ALA B . n B 1 195 ILE 195 211 211 ILE ILE B . n B 1 196 PRO 196 212 212 PRO PRO B . n B 1 197 ASN 197 213 213 ASN ASN B . n B 1 198 GLY 198 214 214 GLY GLY B . n B 1 199 LYS 199 215 215 LYS LYS B . n B 1 200 GLU 200 216 216 GLU GLU B . n B 1 201 THR 201 217 217 THR THR B . n B 1 202 SER 202 218 218 SER SER B . n B 1 203 ILE 203 219 219 ILE ILE B . n B 1 204 GLU 204 220 220 GLU GLU B . n B 1 205 LEU 205 221 221 LEU LEU B . n B 1 206 ASP 206 222 222 ASP ASP B . n B 1 207 VAL 207 223 223 VAL VAL B . n B 1 208 HIS 208 224 ? ? ? B . n B 1 209 HIS 209 225 ? ? ? B . n B 1 210 HIS 210 226 ? ? ? B . n B 1 211 HIS 211 227 ? ? ? B . n B 1 212 HIS 212 228 ? ? ? B . n B 1 213 HIS 213 229 ? ? ? B . n B 1 214 HIS 214 230 ? ? ? B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 128 A ASN 144 ? ASN 'GLYCOSYLATION SITE' 2 B ASN 128 B ASN 144 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-02-19 2 'Structure model' 2 0 2020-07-29 3 'Structure model' 2 1 2023-09-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Database references' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' 'Structure summary' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Refinement description' 9 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' struct_asym 14 2 'Structure model' struct_conn 15 2 'Structure model' struct_ref_seq_dif 16 2 'Structure model' struct_site 17 2 'Structure model' struct_site_gen 18 3 'Structure model' chem_comp 19 3 'Structure model' chem_comp_atom 20 3 'Structure model' chem_comp_bond 21 3 'Structure model' database_2 22 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.auth_asym_id' 2 2 'Structure model' '_atom_site.auth_seq_id' 3 2 'Structure model' '_atom_site.label_asym_id' 4 2 'Structure model' '_atom_site.label_entity_id' 5 2 'Structure model' '_chem_comp.name' 6 2 'Structure model' '_chem_comp.type' 7 2 'Structure model' '_entity.formula_weight' 8 2 'Structure model' '_entity.pdbx_description' 9 2 'Structure model' '_entity.pdbx_number_of_molecules' 10 2 'Structure model' '_entity.type' 11 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 12 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 13 2 'Structure model' '_struct_conn.pdbx_role' 14 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 16 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 17 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 22 2 'Structure model' '_struct_ref_seq_dif.details' 23 3 'Structure model' '_chem_comp.pdbx_synonyms' 24 3 'Structure model' '_database_2.pdbx_DOI' 25 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: dev_1456)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 51 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 107 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 99 ? ? -63.22 97.71 2 1 ARG A 114 ? ? 53.51 -167.37 3 1 ASP A 163 ? ? -145.95 -18.76 4 1 GLN A 166 ? ? -117.61 58.90 5 1 PRO A 193 ? ? -47.73 151.49 6 1 LEU B 64 ? ? -101.13 -68.63 7 1 ASP B 93 ? ? 57.24 70.22 8 1 ASP B 99 ? ? -64.03 95.35 9 1 CYS B 104 ? ? -100.08 71.47 10 1 ARG B 114 ? ? 52.91 -166.82 11 1 ASP B 163 ? ? -146.71 -17.02 12 1 GLN B 166 ? ? -116.07 59.33 13 1 PRO B 193 ? ? -48.89 151.61 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 137 ? CA ? A LEU 121 CA 2 1 Y 1 A LEU 137 ? C ? A LEU 121 C 3 1 Y 1 A LEU 137 ? O ? A LEU 121 O 4 1 Y 1 A LEU 137 ? CB ? A LEU 121 CB 5 1 Y 1 A LEU 137 ? CG ? A LEU 121 CG 6 1 Y 1 A LEU 137 ? CD1 ? A LEU 121 CD1 7 1 Y 1 A LEU 137 ? CD2 ? A LEU 121 CD2 8 1 Y 1 A TYR 143 ? CG ? A TYR 127 CG 9 1 Y 1 A TYR 143 ? CD1 ? A TYR 127 CD1 10 1 Y 1 A TYR 143 ? CD2 ? A TYR 127 CD2 11 1 Y 1 A TYR 143 ? CE1 ? A TYR 127 CE1 12 1 Y 1 A TYR 143 ? CE2 ? A TYR 127 CE2 13 1 Y 1 A TYR 143 ? CZ ? A TYR 127 CZ 14 1 Y 1 A TYR 143 ? OH ? A TYR 127 OH 15 1 Y 1 A GLU 209 ? CG ? A GLU 193 CG 16 1 Y 1 A GLU 209 ? CD ? A GLU 193 CD 17 1 Y 1 A GLU 209 ? OE1 ? A GLU 193 OE1 18 1 Y 1 A GLU 209 ? OE2 ? A GLU 193 OE2 19 1 Y 1 A LYS 215 ? CG ? A LYS 199 CG 20 1 Y 1 A LYS 215 ? CD ? A LYS 199 CD 21 1 Y 1 A LYS 215 ? CE ? A LYS 199 CE 22 1 Y 1 A LYS 215 ? NZ ? A LYS 199 NZ 23 1 Y 1 B THR 23 ? OG1 ? B THR 7 OG1 24 1 Y 1 B THR 23 ? CG2 ? B THR 7 CG2 25 1 Y 1 B GLN 24 ? CG ? B GLN 8 CG 26 1 Y 1 B GLN 24 ? CD ? B GLN 8 CD 27 1 Y 1 B GLN 24 ? OE1 ? B GLN 8 OE1 28 1 Y 1 B GLN 24 ? NE2 ? B GLN 8 NE2 29 1 Y 1 B ARG 26 ? CG ? B ARG 10 CG 30 1 Y 1 B ARG 26 ? CD ? B ARG 10 CD 31 1 Y 1 B ARG 26 ? NE ? B ARG 10 NE 32 1 Y 1 B ARG 26 ? CZ ? B ARG 10 CZ 33 1 Y 1 B ARG 26 ? NH1 ? B ARG 10 NH1 34 1 Y 1 B ARG 26 ? NH2 ? B ARG 10 NH2 35 1 Y 1 B TYR 143 ? CG ? B TYR 127 CG 36 1 Y 1 B TYR 143 ? CD1 ? B TYR 127 CD1 37 1 Y 1 B TYR 143 ? CD2 ? B TYR 127 CD2 38 1 Y 1 B TYR 143 ? CE1 ? B TYR 127 CE1 39 1 Y 1 B TYR 143 ? CE2 ? B TYR 127 CE2 40 1 Y 1 B TYR 143 ? CZ ? B TYR 127 CZ 41 1 Y 1 B TYR 143 ? OH ? B TYR 127 OH 42 1 Y 1 B LYS 215 ? CG ? B LYS 199 CG 43 1 Y 1 B LYS 215 ? CD ? B LYS 199 CD 44 1 Y 1 B LYS 215 ? CE ? B LYS 199 CE 45 1 Y 1 B LYS 215 ? NZ ? B LYS 199 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 17 ? A ALA 1 2 1 Y 1 A ASP 18 ? A ASP 2 3 1 Y 1 A PRO 19 ? A PRO 3 4 1 Y 1 A LEU 20 ? A LEU 4 5 1 Y 1 A PRO 21 ? A PRO 5 6 1 Y 1 A GLY 22 ? A GLY 6 7 1 Y 1 A THR 23 ? A THR 7 8 1 Y 1 A GLY 65 ? A GLY 49 9 1 Y 1 A MET 66 ? A MET 50 10 1 Y 1 A GLY 67 ? A GLY 51 11 1 Y 1 A GLN 68 ? A GLN 52 12 1 Y 1 A GLN 138 ? A GLN 122 13 1 Y 1 A ALA 139 ? A ALA 123 14 1 Y 1 A GLY 140 ? A GLY 124 15 1 Y 1 A THR 141 ? A THR 125 16 1 Y 1 A VAL 223 ? A VAL 207 17 1 Y 1 A HIS 224 ? A HIS 208 18 1 Y 1 A HIS 225 ? A HIS 209 19 1 Y 1 A HIS 226 ? A HIS 210 20 1 Y 1 A HIS 227 ? A HIS 211 21 1 Y 1 A HIS 228 ? A HIS 212 22 1 Y 1 A HIS 229 ? A HIS 213 23 1 Y 1 A HIS 230 ? A HIS 214 24 1 Y 1 B ALA 17 ? B ALA 1 25 1 Y 1 B ASP 18 ? B ASP 2 26 1 Y 1 B PRO 19 ? B PRO 3 27 1 Y 1 B LEU 20 ? B LEU 4 28 1 Y 1 B PRO 21 ? B PRO 5 29 1 Y 1 B GLY 22 ? B GLY 6 30 1 Y 1 B GLN 138 ? B GLN 122 31 1 Y 1 B ALA 139 ? B ALA 123 32 1 Y 1 B GLY 140 ? B GLY 124 33 1 Y 1 B THR 141 ? B THR 125 34 1 Y 1 B HIS 224 ? B HIS 208 35 1 Y 1 B HIS 225 ? B HIS 209 36 1 Y 1 B HIS 226 ? B HIS 210 37 1 Y 1 B HIS 227 ? B HIS 211 38 1 Y 1 B HIS 228 ? B HIS 212 39 1 Y 1 B HIS 229 ? B HIS 213 40 1 Y 1 B HIS 230 ? B HIS 214 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MET N N N N 251 MET CA C N S 252 MET C C N N 253 MET O O N N 254 MET CB C N N 255 MET CG C N N 256 MET SD S N N 257 MET CE C N N 258 MET OXT O N N 259 MET H H N N 260 MET H2 H N N 261 MET HA H N N 262 MET HB2 H N N 263 MET HB3 H N N 264 MET HG2 H N N 265 MET HG3 H N N 266 MET HE1 H N N 267 MET HE2 H N N 268 MET HE3 H N N 269 MET HXT H N N 270 NAG C1 C N R 271 NAG C2 C N R 272 NAG C3 C N R 273 NAG C4 C N S 274 NAG C5 C N R 275 NAG C6 C N N 276 NAG C7 C N N 277 NAG C8 C N N 278 NAG N2 N N N 279 NAG O1 O N N 280 NAG O3 O N N 281 NAG O4 O N N 282 NAG O5 O N N 283 NAG O6 O N N 284 NAG O7 O N N 285 NAG H1 H N N 286 NAG H2 H N N 287 NAG H3 H N N 288 NAG H4 H N N 289 NAG H5 H N N 290 NAG H61 H N N 291 NAG H62 H N N 292 NAG H81 H N N 293 NAG H82 H N N 294 NAG H83 H N N 295 NAG HN2 H N N 296 NAG HO1 H N N 297 NAG HO3 H N N 298 NAG HO4 H N N 299 NAG HO6 H N N 300 PHE N N N N 301 PHE CA C N S 302 PHE C C N N 303 PHE O O N N 304 PHE CB C N N 305 PHE CG C Y N 306 PHE CD1 C Y N 307 PHE CD2 C Y N 308 PHE CE1 C Y N 309 PHE CE2 C Y N 310 PHE CZ C Y N 311 PHE OXT O N N 312 PHE H H N N 313 PHE H2 H N N 314 PHE HA H N N 315 PHE HB2 H N N 316 PHE HB3 H N N 317 PHE HD1 H N N 318 PHE HD2 H N N 319 PHE HE1 H N N 320 PHE HE2 H N N 321 PHE HZ H N N 322 PHE HXT H N N 323 PRO N N N N 324 PRO CA C N S 325 PRO C C N N 326 PRO O O N N 327 PRO CB C N N 328 PRO CG C N N 329 PRO CD C N N 330 PRO OXT O N N 331 PRO H H N N 332 PRO HA H N N 333 PRO HB2 H N N 334 PRO HB3 H N N 335 PRO HG2 H N N 336 PRO HG3 H N N 337 PRO HD2 H N N 338 PRO HD3 H N N 339 PRO HXT H N N 340 SER N N N N 341 SER CA C N S 342 SER C C N N 343 SER O O N N 344 SER CB C N N 345 SER OG O N N 346 SER OXT O N N 347 SER H H N N 348 SER H2 H N N 349 SER HA H N N 350 SER HB2 H N N 351 SER HB3 H N N 352 SER HG H N N 353 SER HXT H N N 354 THR N N N N 355 THR CA C N S 356 THR C C N N 357 THR O O N N 358 THR CB C N R 359 THR OG1 O N N 360 THR CG2 C N N 361 THR OXT O N N 362 THR H H N N 363 THR H2 H N N 364 THR HA H N N 365 THR HB H N N 366 THR HG1 H N N 367 THR HG21 H N N 368 THR HG22 H N N 369 THR HG23 H N N 370 THR HXT H N N 371 TRP N N N N 372 TRP CA C N S 373 TRP C C N N 374 TRP O O N N 375 TRP CB C N N 376 TRP CG C Y N 377 TRP CD1 C Y N 378 TRP CD2 C Y N 379 TRP NE1 N Y N 380 TRP CE2 C Y N 381 TRP CE3 C Y N 382 TRP CZ2 C Y N 383 TRP CZ3 C Y N 384 TRP CH2 C Y N 385 TRP OXT O N N 386 TRP H H N N 387 TRP H2 H N N 388 TRP HA H N N 389 TRP HB2 H N N 390 TRP HB3 H N N 391 TRP HD1 H N N 392 TRP HE1 H N N 393 TRP HE3 H N N 394 TRP HZ2 H N N 395 TRP HZ3 H N N 396 TRP HH2 H N N 397 TRP HXT H N N 398 TYR N N N N 399 TYR CA C N S 400 TYR C C N N 401 TYR O O N N 402 TYR CB C N N 403 TYR CG C Y N 404 TYR CD1 C Y N 405 TYR CD2 C Y N 406 TYR CE1 C Y N 407 TYR CE2 C Y N 408 TYR CZ C Y N 409 TYR OH O N N 410 TYR OXT O N N 411 TYR H H N N 412 TYR H2 H N N 413 TYR HA H N N 414 TYR HB2 H N N 415 TYR HB3 H N N 416 TYR HD1 H N N 417 TYR HD2 H N N 418 TYR HE1 H N N 419 TYR HE2 H N N 420 TYR HH H N N 421 TYR HXT H N N 422 VAL N N N N 423 VAL CA C N S 424 VAL C C N N 425 VAL O O N N 426 VAL CB C N N 427 VAL CG1 C N N 428 VAL CG2 C N N 429 VAL OXT O N N 430 VAL H H N N 431 VAL H2 H N N 432 VAL HA H N N 433 VAL HB H N N 434 VAL HG11 H N N 435 VAL HG12 H N N 436 VAL HG13 H N N 437 VAL HG21 H N N 438 VAL HG22 H N N 439 VAL HG23 H N N 440 VAL HXT H N N 441 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 MET N CA sing N N 240 MET N H sing N N 241 MET N H2 sing N N 242 MET CA C sing N N 243 MET CA CB sing N N 244 MET CA HA sing N N 245 MET C O doub N N 246 MET C OXT sing N N 247 MET CB CG sing N N 248 MET CB HB2 sing N N 249 MET CB HB3 sing N N 250 MET CG SD sing N N 251 MET CG HG2 sing N N 252 MET CG HG3 sing N N 253 MET SD CE sing N N 254 MET CE HE1 sing N N 255 MET CE HE2 sing N N 256 MET CE HE3 sing N N 257 MET OXT HXT sing N N 258 NAG C1 C2 sing N N 259 NAG C1 O1 sing N N 260 NAG C1 O5 sing N N 261 NAG C1 H1 sing N N 262 NAG C2 C3 sing N N 263 NAG C2 N2 sing N N 264 NAG C2 H2 sing N N 265 NAG C3 C4 sing N N 266 NAG C3 O3 sing N N 267 NAG C3 H3 sing N N 268 NAG C4 C5 sing N N 269 NAG C4 O4 sing N N 270 NAG C4 H4 sing N N 271 NAG C5 C6 sing N N 272 NAG C5 O5 sing N N 273 NAG C5 H5 sing N N 274 NAG C6 O6 sing N N 275 NAG C6 H61 sing N N 276 NAG C6 H62 sing N N 277 NAG C7 C8 sing N N 278 NAG C7 N2 sing N N 279 NAG C7 O7 doub N N 280 NAG C8 H81 sing N N 281 NAG C8 H82 sing N N 282 NAG C8 H83 sing N N 283 NAG N2 HN2 sing N N 284 NAG O1 HO1 sing N N 285 NAG O3 HO3 sing N N 286 NAG O4 HO4 sing N N 287 NAG O6 HO6 sing N N 288 PHE N CA sing N N 289 PHE N H sing N N 290 PHE N H2 sing N N 291 PHE CA C sing N N 292 PHE CA CB sing N N 293 PHE CA HA sing N N 294 PHE C O doub N N 295 PHE C OXT sing N N 296 PHE CB CG sing N N 297 PHE CB HB2 sing N N 298 PHE CB HB3 sing N N 299 PHE CG CD1 doub Y N 300 PHE CG CD2 sing Y N 301 PHE CD1 CE1 sing Y N 302 PHE CD1 HD1 sing N N 303 PHE CD2 CE2 doub Y N 304 PHE CD2 HD2 sing N N 305 PHE CE1 CZ doub Y N 306 PHE CE1 HE1 sing N N 307 PHE CE2 CZ sing Y N 308 PHE CE2 HE2 sing N N 309 PHE CZ HZ sing N N 310 PHE OXT HXT sing N N 311 PRO N CA sing N N 312 PRO N CD sing N N 313 PRO N H sing N N 314 PRO CA C sing N N 315 PRO CA CB sing N N 316 PRO CA HA sing N N 317 PRO C O doub N N 318 PRO C OXT sing N N 319 PRO CB CG sing N N 320 PRO CB HB2 sing N N 321 PRO CB HB3 sing N N 322 PRO CG CD sing N N 323 PRO CG HG2 sing N N 324 PRO CG HG3 sing N N 325 PRO CD HD2 sing N N 326 PRO CD HD3 sing N N 327 PRO OXT HXT sing N N 328 SER N CA sing N N 329 SER N H sing N N 330 SER N H2 sing N N 331 SER CA C sing N N 332 SER CA CB sing N N 333 SER CA HA sing N N 334 SER C O doub N N 335 SER C OXT sing N N 336 SER CB OG sing N N 337 SER CB HB2 sing N N 338 SER CB HB3 sing N N 339 SER OG HG sing N N 340 SER OXT HXT sing N N 341 THR N CA sing N N 342 THR N H sing N N 343 THR N H2 sing N N 344 THR CA C sing N N 345 THR CA CB sing N N 346 THR CA HA sing N N 347 THR C O doub N N 348 THR C OXT sing N N 349 THR CB OG1 sing N N 350 THR CB CG2 sing N N 351 THR CB HB sing N N 352 THR OG1 HG1 sing N N 353 THR CG2 HG21 sing N N 354 THR CG2 HG22 sing N N 355 THR CG2 HG23 sing N N 356 THR OXT HXT sing N N 357 TRP N CA sing N N 358 TRP N H sing N N 359 TRP N H2 sing N N 360 TRP CA C sing N N 361 TRP CA CB sing N N 362 TRP CA HA sing N N 363 TRP C O doub N N 364 TRP C OXT sing N N 365 TRP CB CG sing N N 366 TRP CB HB2 sing N N 367 TRP CB HB3 sing N N 368 TRP CG CD1 doub Y N 369 TRP CG CD2 sing Y N 370 TRP CD1 NE1 sing Y N 371 TRP CD1 HD1 sing N N 372 TRP CD2 CE2 doub Y N 373 TRP CD2 CE3 sing Y N 374 TRP NE1 CE2 sing Y N 375 TRP NE1 HE1 sing N N 376 TRP CE2 CZ2 sing Y N 377 TRP CE3 CZ3 doub Y N 378 TRP CE3 HE3 sing N N 379 TRP CZ2 CH2 doub Y N 380 TRP CZ2 HZ2 sing N N 381 TRP CZ3 CH2 sing Y N 382 TRP CZ3 HZ3 sing N N 383 TRP CH2 HH2 sing N N 384 TRP OXT HXT sing N N 385 TYR N CA sing N N 386 TYR N H sing N N 387 TYR N H2 sing N N 388 TYR CA C sing N N 389 TYR CA CB sing N N 390 TYR CA HA sing N N 391 TYR C O doub N N 392 TYR C OXT sing N N 393 TYR CB CG sing N N 394 TYR CB HB2 sing N N 395 TYR CB HB3 sing N N 396 TYR CG CD1 doub Y N 397 TYR CG CD2 sing Y N 398 TYR CD1 CE1 sing Y N 399 TYR CD1 HD1 sing N N 400 TYR CD2 CE2 doub Y N 401 TYR CD2 HD2 sing N N 402 TYR CE1 CZ doub Y N 403 TYR CE1 HE1 sing N N 404 TYR CE2 CZ sing Y N 405 TYR CE2 HE2 sing N N 406 TYR CZ OH sing N N 407 TYR OH HH sing N N 408 TYR OXT HXT sing N N 409 VAL N CA sing N N 410 VAL N H sing N N 411 VAL N H2 sing N N 412 VAL CA C sing N N 413 VAL CA CB sing N N 414 VAL CA HA sing N N 415 VAL C O doub N N 416 VAL C OXT sing N N 417 VAL CB CG1 sing N N 418 VAL CB CG2 sing N N 419 VAL CB HB sing N N 420 VAL CG1 HG11 sing N N 421 VAL CG1 HG12 sing N N 422 VAL CG1 HG13 sing N N 423 VAL CG2 HG21 sing N N 424 VAL CG2 HG22 sing N N 425 VAL CG2 HG23 sing N N 426 VAL OXT HXT sing N N 427 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 NAG 1 C NAG 1 A NAG 901 n C 2 NAG 2 C NAG 2 A NAG 902 n C 2 BMA 3 C BMA 3 A BMA 903 n D 3 NAG 1 D NAG 1 B NAG 901 n D 3 NAG 2 D NAG 2 B NAG 902 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 3 NAG 1 n 3 NAG 2 n # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 4OF0 'PDB Entries 4OF0, 4OF8' 2 ? 'experimental model' PDB 4OF8 'PDB Entries 4OF0, 4OF8' #